Rnf183 (ring finger protein 183) - Rat Genome Database

Name: Rnf183
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rnf183 (ring finger protein 183) Rattus norvegicus

Analyze

Symbol:

Rnf183

Name:

ring finger protein 183

RGD ID:

1564412

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; protein ubiquitination; and response to endoplasmic reticulum stress. Predicted to be located in cis-Golgi network membrane; endoplasmic reticulum membrane; and lysosomal membrane. Orthologous to human RNF183 (ring finger protein 183); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; amitrole.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase RNF183; LOC500474; RGD1564412; similar to novel protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF183 (ring finger protein 183)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rnf183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf183 (ring finger protein 183)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RNF183 (ring finger protein 183)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rnf183 (ring finger protein 183)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rnf-1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	Y45F10B.9	Alliance	DIOPT (PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	75,877,111 - 75,886,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	75,876,003 - 75,886,191 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	78,283,722 - 78,292,729 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	78,284,879 - 78,285,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	82,404,157 - 82,411,971 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	79,421,051 - 79,422,082 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	74,818,014 - 74,828,317 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

amitrole (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

Butylbenzyl phthalate (EXP)

cadmium atom (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

genistein (ISO)

hypochlorous acid (ISO)

malathion (ISO)

methimazole (EXP)

paracetamol (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propanal (ISO)

resveratrol (ISO)

succimer (ISO)

testosterone (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (IBA,ISO)

protein autoubiquitination (IEA,ISO)

protein polyubiquitination (IEA,ISO)

protein ubiquitination (IBA)

response to endoplasmic reticulum stress (IBA,ISO)

Cellular Component

cis-Golgi network membrane (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IBA,ISO)

lysosomal membrane (ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

ubiquitin protein ligase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:26567849	PMID:29300766	PMID:29507230

Genomics

Comparative Map Data

Rnf183
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	75,877,111 - 75,886,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	75,876,003 - 75,886,191 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	78,283,722 - 78,292,729 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	78,284,879 - 78,285,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	82,404,157 - 82,411,971 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	79,421,051 - 79,422,082 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	74,818,014 - 74,828,317 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

RNF183
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	113,297,093 - 113,303,376 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	113,297,093 - 113,303,376 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	116,059,373 - 116,065,656 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	115,099,194 - 115,101,141 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	86,706,988 - 86,708,935 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	85,666,759 - 85,668,706 (-)	NCBI		HuRef
CHM1_1	9	116,206,059 - 116,208,006 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	125,495,894 - 125,502,177 (-)	NCBI		T2T-CHM13v2.0

Rnf183
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	62,345,777 - 62,353,487 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	62,345,777 - 62,353,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	62,427,540 - 62,435,250 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	62,427,540 - 62,435,252 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	62,088,576 - 62,095,760 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	61,913,903 - 61,921,087 (-)	NCBI		MGSCv36	mm8
Celera	4	61,097,549 - 61,104,733 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	33.13	NCBI

Rnf183
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	14,181,073 - 14,189,230 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	14,181,073 - 14,189,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF183
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	26,068,749 - 26,080,843 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	84,396,738 - 84,404,057 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	112,769,343 - 112,775,493 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

RNF183
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	67,660,593 - 67,669,633 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	66,065,391 - 66,073,889 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	68,785,464 - 68,793,963 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	68,786,988 - 68,787,560 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	67,303,061 - 67,311,559 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	67,324,983 - 67,333,484 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	68,071,034 - 68,079,532 (-)	NCBI		UU_Cfam_GSD_1.0

Rnf183
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	182,963,085 - 182,967,424 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	302,045 - 302,623 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	302,015 - 302,757 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF183
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	253,925,677 - 253,933,791 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	253,924,122 - 253,966,702 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	284,680,570 - 284,687,132 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF183
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	26,267,718 - 26,274,299 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	26,273,182 - 26,273,760 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	16,527,204 - 16,528,595 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf183
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	21,795,464 - 21,802,952 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	21,795,690 - 21,802,691 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rnf183
30 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	177
Count of miRNA genes:	138
Interacting mature miRNAs:	148
Transcripts:	ENSRNOT00000019924
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat

Markers in Region

AI233737

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	75,879,501 - 75,879,646 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	78,286,816 - 78,286,960	NCBI	Rnor6.0
Rnor_5.0	5	82,406,548 - 82,406,692	UniSTS	Rnor5.0
RGSC_v3.4	5	79,423,447 - 79,423,591	UniSTS	RGSC3.4
Celera	5	74,821,108 - 74,821,252	UniSTS
RH 3.4 Map	5	560.4	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH133265

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	75,877,224 - 75,877,405 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	78,284,539 - 78,284,719	NCBI	Rnor6.0
Rnor_5.0	5	82,404,271 - 82,404,451	UniSTS	Rnor5.0
RGSC_v3.4	5	79,421,170 - 79,421,350	UniSTS	RGSC3.4
Celera	5	74,818,831 - 74,819,011	UniSTS
RH 3.4 Map	5	558.1	UniSTS
Cytogenetic Map	5	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										23
Low	1								5	8	25	11
Below cutoff		8	21	16	11	16	1	1	50	2	13		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006225342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001837970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001843674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000019924 ⟹ ENSRNOP00000019924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	75,876,565 - 75,879,081 (-)	Ensembl
Rnor_6.0 Ensembl	5	78,284,879 - 78,285,451 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097723 ⟹ ENSRNOP00000085443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	75,876,003 - 75,886,191 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099539 ⟹ ENSRNOP00000097854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	75,876,365 - 75,886,191 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099812 ⟹ ENSRNOP00000087874

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	75,876,003 - 75,885,888 (-)	Ensembl

RefSeq Acc Id:

XM_017593746 ⟹ XP_017449235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	75,877,111 - 75,885,802 (-)	NCBI
Rnor_6.0	5	78,283,722 - 78,291,979 (-)	NCBI

Sequence:

show sequence

AGTGGGTGAGGGTGCAGCAGGTGCTGCTTTTTGGTGTGAACTCTGACATAGGAGGGCAGGCTCT
TGGGTCAGTTTTCAAGCTTGGCCACTCTGGCTCAGCAGCTAGTGGTCAAGCTACCTTACATCCT
GAGCCCTGGTTTCCCCCCACCTACCATATGGGCATTTACAGAATCATGCTAACTTCTGTACTGA
CCGCCCTGGGTAGCACACTCAGAGCAATTCTTTCCCCACAGAAACAGTAGGAAGGGGTCCTGGG
CTTCCTCAACAGAAGAAAGTGGAGTTCAGAGAAGCCATTGATTCAGATCAGCAAGAGTCTTGTT
TCAAATTGCCTATGGACGTCATGAGAGAAAAGAGAAGGTGTATGCAGCGAGTGGAAGATATGGC
AGGCAACTCCTGTGTGCAAGGAGAAGATGCCAGCCTTTTAGAAAAAAAACGAGGGCCCAAGAGA
GAGGAAACCCAGAAGACCTGCCCTCATGGTGATCTAGGAAGAGGAAACTGTCACCCTTCCCTTC
CCAGGCTGATGATTTCAGGTATGAAAGGGGCCACCTTTGGACCTGTGTCTGCTCTACATTCAAC
TGCTAGTCACACCCTTTGTGTGTGTGTGTGTTCACGAATGCTTCTCTGTGTGTCATTTGGGTCT
CCCAGGCACCACTCTGGCCTTGATTCCAGGCAAGCGTGCTAAGGCTGCAGCCAAGGCTACCTGG
CAGCTCCAGGTGCTGTGAGCATGCTGTCATGGAAACGGCCCTGGGGTTGGTGGCAAGGCGGCAG
TTTCCCAAAGCAGAACAGGAGAGGGAGAGCCGGGGAAACTCGGACCCTTCAGAGTGGTCGCTCC
GATTCCCCTCCTACGATTCACAAAACCCAGGGCATCCCCGTGAGGTTCTGGCTCCCTAAATGTG
ATCAGAGGATGAGTGAACCACAGGTCCAGGAGCTCAAAGCCGAGTGCCCTGTCTGCTGGAACCC
TTTCAACAACACGTTCCACACCCCCAAAGTGCTAGACTGCTGTCACTCCTTCTGCGTGGAGTGC
TTGGCCCACCTCAGCCTGGTGAGCCCGGCCAGGCGCCGCTTGCTCTGCCCACTCTGTCGTCAGA
CCACCGTGCTGGCTTCAGGGCAACCAGTCACTGACTTACCTACAGACACTGCCATGCTGACCCT
GCTCCGCCTAGAGCCCCACCATGTCATCCTCGAGGGCCACCAGCTCTGTCTCAAGGACCAGCCC
AAGAGCCGCTACTTCCTGCGTCAGCCTCGGGTCTACACCCTGGACCTCGGCCCTGAGCCAGGGA
GCCAGACTGGGCTTCCTCAGGACACAGCCCCTGACACCAGGCCGGTGCCCATCCCCAGTCACTA
CTCTCTCAGAGAGTGTGTCCGAAACCCTCACTTCCGGATCTTTGCCTATCTGATGGCTGTCATC
CTCAGCGTCACCCTGCTTCTCATCTTCTCCATCTTTTGGACTAAGCAGCTCTTTTGGGGCATGG
GATGAGCACATTGTGTTCCAGGACAAGGAGCAGAGCCGTTCACAGTGGCTGCTGGACCGAGGAC
TACTGAACTGCCTTTGGTGTTACCTTTCTTGTAGTATTGCTCATTTCACAGCTCGGGGATCAGC
TAGGTCTGCGTTGGAGAACAGATGCCCGACAGGAAGAGAAGAGCTGAAGGGTCAGAGACCTGAT
CTTAAACTAGGGGGGTCATGGAGAGTACAGAAACAGTTCTATGGCTACATAGCCACATAGTGAG
TTGTGCCAAAGGGCTGGACAGTACCACCCAGTCATCCAACTGGCTGAGATAGCTTGTAGCATCT
TTCACTGGACCGGAGTTGAACTGTGTTGCTGAAATTCTGGAAAGTGTTTCGATTCTGTGAGCCC
CTGTGCCTCCCCTCCTCCCCCATTTCAGCTTTTTCTGATCCTTGCCACTGTTCCCAGTAAAGGT
CGTCTGCATTCTCTAAGTCATTGATTCCCCCCCCCCCCCTTCCACAACCTTTACTGGGCAGACA
GAGAGGGAAGAAAAGACAGGATGATCCAGAGGTAGTAGCTGACCCTCAGGGGAAGGGAGGGTGT
GCAGGGGGACATCTTCAGATGGAGTGAAGAAATGAATCTAAGGTGAAGGATGCAAGGCTGACTG
GGAAGGACTTGAGGTTCCTCCTAGTCAGTGCTTGCGGGACAGACGGAGCCTAGCTCAGCACTGT
AACTTGGGCCTCCAAGAGGTAAGGCTGACACCTGGACAGAGGTAGTGCTTCAGGTGCATCTCAG
GTTGGAGTAGTGTGGGGCCCAGGAAGTGACCTTGGTTTTCTCTTCAGAGGATAGAATCTAAAAT
TTAGCCCAGCCAGCCGCTGCCTGATACTGTGCCACATAAATGCTACTTCTTTGGTTTGAACATG
TCCTTCTGGCTCCCAACTTTGAAGCAATCTCAAAGTGTCTAATACACAATCAGGAAAAGACATC
TTACTTTTTTTTTGTTGTTTTGGTTTTTTTGGATTTATAGAATAAGCTGTCAGAGGTAACTTGA
GTCAGTTTTATTTGCACTAAATAATATTTACACAGAAGTATAGTTTATTTGCAACTTCCTTAGG
ATTACAAAGGTATAAGATACTAAAAAATCAAGATGTAAACTGTATTTTGATTTAGTAAAACCAG
ACAGTTTTAA

hide sequence

RefSeq Acc Id:

XM_039111064 ⟹ XP_038966992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	75,877,111 - 75,886,253 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_017449235	(Get FASTA)	NCBI Sequence Viewer
	XP_038966992	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019924
	ENSRNOP00000019924.4
	ENSRNOP00000085443.1
	ENSRNOP00000087874.1
	ENSRNOP00000097854.1

RefSeq Acc Id:

XP_017449235 ⟸ XM_017593746

- UniProtKB:

D4A718 (UniProtKB/TrEMBL), A6J7U6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSWKRPWGWWQGGSFPKQNRRGRAGETRTLQSGRSDSPPTIHKTQGIPVRFWLPKCDQRMSEP
QVQELKAECPVCWNPFNNTFHTPKVLDCCHSFCVECLAHLSLVSPARRRLLCPLCRQTTVLASG
QPVTDLPTDTAMLTLLRLEPHHVILEGHQLCLKDQPKSRYFLRQPRVYTLDLGPEPGSQTGLPQ
DTAPDTRPVPIPSHYSLRECVRNPHFRIFAYLMAVILSVTLLLIFSIFWTKQLFWGMG

hide sequence

RefSeq Acc Id:

ENSRNOP00000019924 ⟸ ENSRNOT00000019924

RefSeq Acc Id:	XP_038966992 ⟸ XM_039111064
- UniProtKB:	D4A718 (UniProtKB/TrEMBL), A6J7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000097854 ⟸ ENSRNOT00000099539

RefSeq Acc Id:

ENSRNOP00000085443 ⟸ ENSRNOT00000097723

RefSeq Acc Id:

ENSRNOP00000087874 ⟸ ENSRNOT00000099812

Protein Domains

RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A718-F1-model_v2	AlphaFold	D4A718	1-190	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564412	AgrOrtholog
BioCyc Gene	G2FUF-41097	BioCyc
Ensembl Genes	ENSRNOG00000014861	Ensembl
	ENSRNOG00000064866	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019924	ENTREZGENE
	ENSRNOT00000019924.5	UniProtKB/TrEMBL
	ENSRNOT00000097723.1	UniProtKB/TrEMBL
	ENSRNOT00000099539.1	UniProtKB/TrEMBL
	ENSRNOT00000099812.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:500474	UniProtKB/TrEMBL
NCBI Gene	500474	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF183	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	zf-RING_2	UniProtKB/TrEMBL
PhenoGen	Rnf183	PhenoGen
PROSITE	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014861	RatGTEx
	ENSRNOG00000064866	RatGTEx
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A8I6B6E7_RAT	UniProtKB/TrEMBL
	A6J7U6	ENTREZGENE, UniProtKB/TrEMBL
	D4A718	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Rnf183	ring finger protein 183	Rnf183	ring finger protein 183	Data merged from RGD:149736475	737654	PROVISIONAL
2021-08-09	Rnf183	ring finger protein 183			Symbol and Name status set to provisional	45752	PROVISIONAL
2008-03-06	Rnf183	ring finger protein 183	RGD1564412_predicted	similar to novel protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564412_predicted	similar to novel protein (predicted)	LOC500474	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500474	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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