Erp44 (endoplasmic reticulum protein 44) - Rat Genome Database

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Gene: Erp44 (endoplasmic reticulum protein 44) Rattus norvegicus
Analyze
Symbol: Erp44
Name: endoplasmic reticulum protein 44
RGD ID: 1309176
Description: Predicted to enable protein disulfide isomerase activity. Predicted to be involved in several processes, including protein folding; response to endoplasmic reticulum stress; and response to unfolded protein. Predicted to be located in cell surface and endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human ERP44 (endoplasmic reticulum protein 44); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BWK4; endoplasmic reticulum resident protein 44; LOC298066; thioredoxin domain containing 4 (endoplasmic reticulum); Txndc4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8567,313,245 - 67,406,207 (-)NCBIGRCr8
mRatBN7.2562,516,550 - 62,610,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl562,516,551 - 62,610,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx564,492,222 - 64,585,236 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0566,311,515 - 66,404,538 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0566,280,980 - 66,374,000 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0563,937,866 - 64,030,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,937,784 - 64,030,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0568,455,221 - 68,548,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,869,536 - 64,962,569 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1564,874,574 - 64,967,608 (-)NCBI
Celera564,984,853 - 65,077,468 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11847130   PMID:15308636   PMID:19199708   PMID:19995400   PMID:22215678  


Genomics

Comparative Map Data
Erp44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8567,313,245 - 67,406,207 (-)NCBIGRCr8
mRatBN7.2562,516,550 - 62,610,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl562,516,551 - 62,610,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx564,492,222 - 64,585,236 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0566,311,515 - 66,404,538 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0566,280,980 - 66,374,000 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0563,937,866 - 64,030,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,937,784 - 64,030,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0568,455,221 - 68,548,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,869,536 - 64,962,569 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1564,874,574 - 64,967,608 (-)NCBI
Celera564,984,853 - 65,077,468 (+)NCBICelera
Cytogenetic Map5q22NCBI
ERP44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38999,979,185 - 100,099,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl999,979,185 - 100,099,052 (-)EnsemblGRCh38hg38GRCh38
GRCh379102,741,467 - 102,861,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369101,781,282 - 101,901,151 (-)NCBINCBI36Build 36hg18NCBI36
Celera973,254,858 - 73,374,731 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef972,340,490 - 72,460,508 (-)NCBIHuRef
CHM1_19102,887,925 - 103,007,771 (-)NCBICHM1_1
T2T-CHM13v2.09112,150,810 - 112,270,620 (-)NCBIT2T-CHM13v2.0
Erp44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39448,190,711 - 48,279,635 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl448,193,323 - 48,279,558 (-)EnsemblGRCm39 Ensembl
GRCm38448,190,711 - 48,279,635 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl448,193,323 - 48,279,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv37448,206,203 - 48,292,461 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36448,215,467 - 48,300,658 (-)NCBIMGSCv36mm8
Celera448,215,114 - 48,301,229 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.09NCBI
Erp44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541925,584,404 - 25,665,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541925,584,404 - 25,665,590 (+)NCBIChiLan1.0ChiLan1.0
ERP44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21139,362,223 - 39,481,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1939,364,594 - 39,484,267 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0971,062,078 - 71,185,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1999,182,352 - 99,301,938 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl999,182,352 - 99,301,938 (-)Ensemblpanpan1.1panPan2
ERP44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11156,957,064 - 57,039,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1156,958,817 - 57,039,741 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1155,389,180 - 55,483,471 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01158,066,652 - 58,161,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1158,065,994 - 58,160,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11156,570,877 - 56,665,156 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01156,595,729 - 56,690,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01157,295,165 - 57,389,544 (-)NCBIUU_Cfam_GSD_1.0
Erp44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947171,839,892 - 171,923,197 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365248,383,891 - 8,470,855 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365248,387,234 - 8,470,776 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERP44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1241,785,146 - 241,897,539 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11241,788,801 - 241,897,432 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21270,077,943 - 270,216,303 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERP44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11239,333,924 - 39,448,994 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1239,333,944 - 39,448,535 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660353,103,895 - 3,218,823 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erp44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624825866,077 - 959,146 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624825865,901 - 962,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erp44
556 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:592
Count of miRNA genes:292
Interacting mature miRNAs:368
Transcripts:ENSRNOT00000007711
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat

Markers in Region
D5Rat195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,605,452 - 62,605,589 (+)MAPPERmRatBN7.2
Rnor_6.0564,025,844 - 64,025,980NCBIRnor6.0
Rnor_5.0568,543,199 - 68,543,335UniSTSRnor5.0
RGSC_v3.4564,957,358 - 64,957,495RGDRGSC3.4
RGSC_v3.4564,957,359 - 64,957,495UniSTSRGSC3.4
RGSC_v3.1564,962,398 - 64,962,534RGD
Celera564,989,911 - 64,990,043UniSTS
RH 3.4 Map5413.0RGD
RH 3.4 Map5413.0UniSTS
SHRSP x BN Map537.0299UniSTS
SHRSP x BN Map537.0299RGD
Cytogenetic Map5q22UniSTS
RH143564  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,549,044 - 62,550,358 (+)MAPPERmRatBN7.2
Rnor_6.0563,969,212 - 63,970,525NCBIRnor6.0
Rnor_5.0568,486,567 - 68,487,880UniSTSRnor5.0
RGSC_v3.4564,901,067 - 64,902,380UniSTSRGSC3.4
Celera565,045,135 - 65,046,448UniSTS
RH 3.4 Map5413.0UniSTS
Cytogenetic Map5q22UniSTS
RH127879  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,517,357 - 62,517,563 (+)MAPPERmRatBN7.2
Rnor_6.0563,937,526 - 63,937,731NCBIRnor6.0
Rnor_5.0568,454,881 - 68,455,086UniSTSRnor5.0
RGSC_v3.4564,869,196 - 64,869,401UniSTSRGSC3.4
Celera565,077,603 - 65,077,808UniSTS
RH 3.4 Map5402.1UniSTS
Cytogenetic Map5q22UniSTS
RH129120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,517,756 - 62,517,914 (+)MAPPERmRatBN7.2
Rnor_6.0563,937,925 - 63,938,082NCBIRnor6.0
Rnor_5.0568,455,280 - 68,455,437UniSTSRnor5.0
RGSC_v3.4564,869,595 - 64,869,752UniSTSRGSC3.4
Celera565,077,252 - 65,077,409UniSTS
RH 3.4 Map5413.6UniSTS
Cytogenetic Map5q22UniSTS
RH132223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,516,688 - 62,516,908 (+)MAPPERmRatBN7.2
Rnor_6.0563,936,857 - 63,937,076NCBIRnor6.0
Rnor_5.0568,454,212 - 68,454,431UniSTSRnor5.0
RGSC_v3.4564,868,527 - 64,868,746UniSTSRGSC3.4
Celera565,078,258 - 65,078,477UniSTS
RH 3.4 Map5413.8UniSTS
Cytogenetic Map5q22UniSTS
BE098131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,516,805 - 62,516,961 (+)MAPPERmRatBN7.2
Rnor_6.0563,936,974 - 63,937,129NCBIRnor6.0
Rnor_5.0568,454,329 - 68,454,484UniSTSRnor5.0
RGSC_v3.4564,868,644 - 64,868,799UniSTSRGSC3.4
Celera565,078,205 - 65,078,360UniSTS
RH 3.4 Map5414.2UniSTS
Cytogenetic Map5q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000007711   ⟹   ENSRNOP00000007711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl562,516,551 - 62,610,761 (-)Ensembl
Rnor_6.0 Ensembl563,937,784 - 64,030,901 (-)Ensembl
RefSeq Acc Id: NM_001008317   ⟹   NP_001008318
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8567,313,245 - 67,406,207 (-)NCBI
mRatBN7.2562,517,698 - 62,610,664 (-)NCBI
Rnor_6.0563,937,866 - 64,030,827 (-)NCBI
Rnor_5.0568,455,221 - 68,548,182 (-)NCBI
RGSC_v3.4564,869,536 - 64,962,569 (-)RGD
Celera564,984,853 - 65,077,468 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001008318 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO17785 (Get FASTA)   NCBI Sequence Viewer  
  EDL78194 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007711
  ENSRNOP00000007711.3
RefSeq Acc Id: NP_001008318   ⟸   NM_001008317
- Peptide Label: precursor
- UniProtKB: Q5VLR5 (UniProtKB/TrEMBL),   A6KJF6 (UniProtKB/TrEMBL),   F7FLN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007711   ⟸   ENSRNOT00000007711
Protein Domains
Thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VLR5-F1-model_v2 AlphaFold Q5VLR5 1-406 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693724
Promoter ID:EPDNEW_R4248
Type:initiation region
Name:Erp44_1
Description:endoplasmic reticulum protein 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0564,030,885 - 64,030,945EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309176 AgrOrtholog
BioCyc Gene G2FUF-41359 BioCyc
Ensembl Genes ENSRNOG00000005841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007711 ENTREZGENE
  ENSRNOT00000007711.6 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro ERp44_PDI_b UniProtKB/TrEMBL
  ERp44_PDI_b' UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
KEGG Report rno:298066 UniProtKB/TrEMBL
NCBI Gene 298066 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 UniProtKB/TrEMBL
  ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PhenoGen Erp44 PhenoGen
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005841 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A6KJF6 ENTREZGENE, UniProtKB/TrEMBL
  F7FLN3 ENTREZGENE, UniProtKB/TrEMBL
  Q5VLR5 ENTREZGENE
UniProt Secondary Q5VLR5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Erp44  endoplasmic reticulum protein 44  Txndc4  thioredoxin domain containing 4 (endoplasmic reticulum)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Txndc4  thioredoxin domain containing 4 (endoplasmic reticulum)  Txndc4_predicted  thioredoxin domain containing 4 (endoplasmic reticulum) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Txndc4_predicted  thioredoxin domain containing 4 (endoplasmic reticulum) (predicted)      Symbol and Name status set to approved 70820 APPROVED