Myorg (myogenesis regulating glycosidase)

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Gene: Myorg (myogenesis regulating glycosidase) Rattus norvegicus

Analyze

Symbol:

Myorg

Name:

myogenesis regulating glycosidase

RGD ID:

1309821

Description:

Predicted to have hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to be involved in positive regulation of insulin-like growth factor receptor signaling pathway; positive regulation of protein kinase B signaling; and skeletal muscle fiber development. Predicted to localize to endoplasmic reticulum membrane and nuclear membrane. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human MYORG (myogenesis regulating glycosidase (putative)); INTERACTS WITH acetamide; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

hypothetical protein LOC366360; LOC366360; myogenesis-regulating glycosidase; RGD1309821; similar to KIAA1161 protein; uncharacterized family 31 glucosidase KIAA1161 homolog; uncharacterized protein LOC366360

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	56,654,257 - 56,664,467 (-)	NCBI
Rnor_6.0 Ensembl	5	57,876,498 - 57,881,944 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	57,873,404 - 57,882,008 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	62,402,424 - 62,409,832 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	58,917,805 - 58,923,251 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	58,917,973 - 58,920,155 (-)	NCBI
Celera	5	55,254,804 - 55,260,248 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Idiopathic Basal Ganglia Calcification 7 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

clothianidin (ISO)

cobalt dichloride (EXP)

dicrotophos (ISO)

diuron (EXP)

ethanol (ISO)

flutamide (EXP)

furan (EXP)

glycidol (EXP)

Methylazoxymethanol acetate (EXP)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (EXP)

perfluorononanoic acid (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

positive regulation of insulin-like growth factor receptor signaling pathway (ISO)

positive regulation of protein kinase B signaling (ISO)

skeletal muscle fiber development (IBA,ISO)

Cellular Component

endoplasmic reticulum membrane (ISO)

integral component of membrane (IEA)

nuclear membrane (ISO)

Molecular Function

hydrolase activity, hydrolyzing O-glycosyl compounds (IEA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19706595

Genomics

Comparative Map Data

Myorg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	56,654,257 - 56,664,467 (-)	NCBI
Rnor_6.0 Ensembl	5	57,876,498 - 57,881,944 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	57,873,404 - 57,882,008 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	62,402,424 - 62,409,832 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	58,917,805 - 58,923,251 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	58,917,973 - 58,920,155 (-)	NCBI
Celera	5	55,254,804 - 55,260,248 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

MYORG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	34,366,666 - 34,376,898 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	34,366,149 - 34,376,952 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	34,366,664 - 34,376,896 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	9	34,368,907 - 34,376,894 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	34,358,907 - 34,366,894 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	9	34,300,413 - 34,308,399 (-)	NCBI
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	34,323,996 - 34,331,984 (-)	NCBI		HuRef
CHM1_1	9	34,366,426 - 34,376,658 (-)	NCBI		CHM1_1

Myorg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,495,601 - 41,503,132 (-)	NCBI	GRCm39		mm39
GRCm38	4	41,491,847 - 41,503,135 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,495,604 - 41,503,076 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	41,442,637 - 41,450,109 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	41,684,274 - 41,691,728 (-)	NCBI			mm8
Celera	4	41,156,888 - 41,164,370 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI

Myorg
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	1,735,292 - 1,740,304 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	1,735,292 - 1,740,304 (+)	NCBI	ChiLan1.0	ChiLan1.0

MYORG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	35,013,976 - 35,022,065 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,015,847 - 35,017,991 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	34,205,177 - 34,213,351 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MYORG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	51,071,707 - 51,073,851 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	51,070,088 - 51,077,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Myorg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936524	2,463,645 - 2,471,233 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYORG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	32,348,701 - 32,443,968 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	32,436,349 - 32,443,971 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MYORG
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	46,235,327 - 46,243,153 (+)	NCBI
ChlSab1.1 Ensembl	12	46,240,208 - 46,242,352 (+)	Ensembl

Myorg
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	38,775,648 - 38,786,112 (-)	NCBI

Position Markers

RH143919

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	57,877,560 - 57,877,753	NCBI	Rnor6.0
Rnor_5.0	5	62,405,388 - 62,405,581	UniSTS	Rnor5.0
RGSC_v3.4	5	58,918,867 - 58,919,060	UniSTS	RGSC3.4
Celera	5	55,255,866 - 55,256,059	UniSTS
Cytogenetic Map	5	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	89432042	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	93273395	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	1525098	78720537	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	1666587	71552720	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9514842	103580403	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12651967	117554267	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	13288888	58288888	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18847913	63847913	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18847913	76608178	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21904363	66904363	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	29078899	74078899	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	29078899	74078899	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	29641661	74641661	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	29641661	74641661	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31926122	136640934	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	34402409	79402409	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	34402409	79402409	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	34402409	79402409	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	35225432	108092802	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	35661945	117554267	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35788756	70742105	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44404276	89432042	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	44404276	134502294	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	48722038	93587756	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	51804426	96804426	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	51804426	96804426	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	53309568	98309568	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	55903593	100903593	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	56902367	101902367	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	56991667	137729065	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	642
Count of miRNA genes:	276
Interacting mature miRNAs:	348
Transcripts:	ENSRNOT00000033235
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	1	30	28	3	28	8	11	26	8	7	11	8
Low	1	42	27	13	16	13			48	27	34
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000033235 ⟹ ENSRNOP00000033466

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	57,876,498 - 57,881,944 (-)	Ensembl

RefSeq Acc Id:

NM_001108971 ⟹ NP_001102441

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	56,658,945 - 56,664,391 (-)	NCBI
Rnor_6.0	5	57,876,498 - 57,881,944 (-)	NCBI
Rnor_5.0	5	62,402,424 - 62,409,832 (-)	NCBI
RGSC_v3.4	5	58,917,805 - 58,923,251 (-)	RGD
Celera	5	55,254,804 - 55,260,248 (-)	RGD

Sequence:

show sequence

TGATCAACTCCTGCTAGCGTGGAGAGAGGATCAGCTGGAGGACCCTTCTTCCCTTCTTTGTGGC
GGTCACTGAGAGTTCTCACCGATTTGGCAAGCCGTGGGGCCTGAGAGAAACAAGGACATCAGCA
CGACAGTTTCAGATGGGCCCTGGTGTGGTGGTTCCTTTCTTAGCTAGGAACTGATGCCCCAGAA
CCTTCAGGAGAAGAGCCAGGTCTACCCCAGACATCGACTTGGTAGCCACGCAGGCCCTAAAAGT
CTCGAAGTTATCCCAGGAGCAACCATGTACACTTTCCTGCCTGACAATTTTTCACCTGCCAAAC
CCAAGCCCACTAAAGAGCTGAGGCCTCTGCTATGCTCCGTGGTACTGGGACTGCTGCTGGTGCT
GGCCGCAGTTGTGGCCTGGTGCTACTATAGCGCCTCCTTACGCAAAGCTGAACGCCTGCGCGCA
GAGCTGCTGGACCTGAACCGTGGCGGCTTCTCCATCCGTAACCAGAAGGGTGAGCAAGTCTTCC
GCTTGGCCTTCCGTTCGGGTGCGCTGGATCTTGACTCCTGTAGCCGGGACGGTGCCCTGCTTGG
CTGCTCCCGAACGGCCGATGGGCGCCCGTTGCACTTCTTTATCCAGACTGTACGACCCAAGGAC
ACTGTAATGTGCTACCGCGTGCGCTGGGAGGAAGCTGCACCAGGGCGTGCTGTAGAGCACGCGA
TGTTTCTGGGAGATGCTGCAGCGCACTGGTATGGTGGCGCAGAGATGAGGACGCAACACTGGCC
CATCCGCCTAGATGGCCAGCAAGAGCCGCAGCCATTTGTCACGAGCGACGTCTACTCTTCTGAC
GCCGCATTCGGGGGCATCCTTGAGCGCTACTGGCTATCTTCCCGCGCGGCCGCCATCAAAGTCA
ATGATTCAGTGCCCTTCCACCTGGGCTGGAACAGCACCGAGCGTTCGATGAGATTGCAGGCACG
CTACCACCACACATCTTACAAGCCACCAGCCGGCCGGACTGCAGCGCCAGAGCTCAGCTACCGC
GTGTGCGTGGGCTCAGATGTCACCTCCATCCACAAGTACATGGTTCGACGTTACTTCAACAAAC
CGTCCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGTCCACGTGGGCTCTATATGG
GCGCTCTGTGGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGCCAGCACCGCTTCAAC
AGCAGCCATCTGGAAATCGATGACATGTACACGCCGGCCTATGGTGACTTTGATTTCGACGAGA
GCAAGTTCCCCAACGCCACTGACCTGTTCCACCGCCTGCGAGATGCTGGCTTCCGCGTCACACT
TTGGGTGCATCCGTTTGTCAACTATAACTCGTCGCGTTTCGGCGAAGGTGTGGAGCGCGAGCTG
TTCGTGCGGGAGCCCACGGGCCGCCTGCCCGCGCTCGTGCGCTGGTGGAACGGCATTGGCGCGG
TGCTGGACTTCACGCGCCCAGAGGCCCGAGAGTGGTTCCAGGGACACCTACGGCGCCTGCGCTC
GCGCTACAACGTGGCCTCCTTTAAGTTCGACGCGGGTGAAGTCAGCTACCTGCCCCCGGACTTC
AGCACCTACAAGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGGTACACCGAGATGGCGCTGC
CCTTCTTCTCGCTAGCCGAAGTCCGCGTGGGGTACCAGTCACAGAACATCTCCTGCTTCTTCCG
TCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTCATCCCTGCGGTG
CTCACCGTCAGTATGCTGGGCTATCCGTTCATCTTACCTGATATGATAGGTGGCAACGCGGTGC
CGGAGCGCACAGCGGGCCGCCCAGATGGGCCGGGGCCAGAGCGCGAACTCTACGTGCGCTGGCT
GGAGGTGGCCGCCTTCATGCCTGCCATGCAGTTTTCAATCCCTCCTTGGCAGTATGACGCAGAA
GTGGTAGCCATCGCACATAAATTCGCTGCTCTGCGCGCCTCCCTCGTGGCGCCACTGCTGCTGG
AGCTTGCTGGTGAGGTCACCGACACGGGCGACCCCATCGTGCGCCCCCTGTGGTGGATCGCACC
CGGGGATGAAACGGCTCACCGCATTGACTCACAGTTCCTCATCGGGGACACGCTGTTGGTGGCA
CCGGTACTGGAACCTGGTAAGCAAGAGCGCGATGTCTACCTGCCTGCCGGCAAATGGCGAAGTT
ACAAGGGTGAGCTTTTTGACAAGACGCCTGTGCTGCTCACGGATTACCCTGTCGACCTGGATGA
GGTCGCCTATTTCACCTGGGCTTCCTGA

hide sequence

RefSeq Acc Id:

XM_006238094 ⟹ XP_006238156

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	56,657,046 - 56,664,460 (-)	NCBI
Rnor_6.0	5	57,873,404 - 57,882,008 (-)	NCBI
Rnor_5.0	5	62,402,424 - 62,409,832 (-)	NCBI

Sequence:

show sequence

GGAGGGCGGGGCGCAGGAGGGGCTCCACGGTGCCCAGCCAGGCAGCACCCCGCAGGGCTGTGGC
TGATCAACTCCTGCTAGCGTGGAGAGAGGATCAGCTGGAGGACCCTTCTTCCCTTCTTTGTGGC
GGTCACTGAGACATCAGCACGACAGTTTCAGATGGGCCCTGGTGTGGTGGTTCCTTTCTTAGCT
AGGAACTGATGCCCCAGAACCTTCAGGAGAAGAGCCAGGTCTACCCCAGACATCGACTTGGTAG
CCACGCAGGCCCTAAAAGTCTCGAAGTTATCCCAGGAGCAACCATGTACACTTTCCTGCCTGAC
AATTTTTCACCTGCCAAACCCAAGCCCACTAAAGAGCTGAGGCCTCTGCTATGCTCCGTGGTAC
TGGGACTGCTGCTGGTGCTGGCCGCAGTTGTGGCCTGGTGCTACTATAGCGCCTCCTTACGCAA
AGCTGAACGCCTGCGCGCAGAGCTGCTGGACCTGAACCGTGGCGGCTTCTCCATCCGTAACCAG
AAGGGTGAGCAAGTCTTCCGCTTGGCCTTCCGTTCGGGTGCGCTGGATCTTGACTCCTGTAGCC
GGGACGGTGCCCTGCTTGGCTGCTCCCGAACGGCCGATGGGCGCCCGTTGCACTTCTTTATCCA
GACTGTACGACCCAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGGAAGCTGCACCAGGG
CGTGCTGTAGAGCACGCGATGTTTCTGGGAGATGCTGCAGCGCACTGGTATGGTGGCGCAGAGA
TGAGGACGCAACACTGGCCCATCCGCCTAGATGGCCAGCAAGAGCCGCAGCCATTTGTCACGAG
CGACGTCTACTCTTCTGACGCCGCATTCGGGGGCATCCTTGAGCGCTACTGGCTATCTTCCCGC
GCGGCCGCCATCAAAGTCAATGATTCAGTGCCCTTCCACCTGGGCTGGAACAGCACCGAGCGTT
CGATGAGATTGCAGGCACGCTACCACCACACATCTTACAAGCCACCAGCCGGCCGGACTGCAGC
GCCAGAGCTCAGCTACCGCGTGTGCGTGGGCTCAGATGTCACCTCCATCCACAAGTACATGGTT
CGACGTTACTTCAACAAACCGTCCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGT
CCACGTGGGCTCTATATGGGCGCTCTGTGGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGAT
CCGCCAGCACCGCTTCAACAGCAGCCATCTGGAAATCGATGACATGTACACGCCGGCCTATGGT
GACTTTGATTTCGACGAGAGCAAGTTCCCCAACGCCACTGACCTGTTCCACCGCCTGCGAGATG
CTGGCTTCCGCGTCACACTTTGGGTGCATCCGTTTGTCAACTATAACTCGTCGCGTTTCGGCGA
AGGTGTGGAGCGCGAGCTGTTCGTGCGGGAGCCCACGGGCCGCCTGCCCGCGCTCGTGCGCTGG
TGGAACGGCATTGGCGCGGTGCTGGACTTCACGCGCCCAGAGGCCCGAGAGTGGTTCCAGGGAC
ACCTACGGCGCCTGCGCTCGCGCTACAACGTGGCCTCCTTTAAGTTCGACGCGGGTGAAGTCAG
CTACCTGCCCCCGGACTTCAGCACCTACAAGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGG
TACACCGAGATGGCGCTGCCCTTCTTCTCGCTAGCCGAAGTCCGCGTGGGGTACCAGTCACAGA
ACATCTCCTGCTTCTTCCGTCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCG
CTCTCTCATCCCTGCGGTGCTCACCGTCAGTATGCTGGGCTATCCGTTCATCTTACCTGATATG
ATAGGTGGCAACGCGGTGCCGGAGCGCACAGCGGGCCGCCCAGATGGGCCGGGGCCAGAGCGCG
AACTCTACGTGCGCTGGCTGGAGGTGGCCGCCTTCATGCCTGCCATGCAGTTTTCAATCCCTCC
TTGGCAGTATGACGCAGAAGTGGTAGCCATCGCACATAAATTCGCTGCTCTGCGCGCCTCCCTC
GTGGCGCCACTGCTGCTGGAGCTTGCTGGTGAGGTCACCGACACGGGCGACCCCATCGTGCGCC
CCCTGTGGTGGATCGCACCCGGGGATGAAACGGCTCACCGCATTGACTCACAGTTCCTCATCGG
GGACACGCTGTTGGTGGCACCGGTACTGGAACCTGGTAAGCAAGAGCGCGATGTCTACCTGCCT
GCCGGCAAATGGCGAAGTTACAAGGGTGAGCTTTTTGACAAGACGCCTGTGCTGCTCACGGATT
ACCCTGTCGACCTGGATGAGGTCGCCTATTTCACCTGGGCTTCCTGACCCAGCTCAGAACCTAG
GAATCCCACAGCCCTAACCCCAGCCTTCATACAAACTTTTAATCCTCTACCACGCGCGAACGGT
GAACCCTCAGGAAGACCCCACCTCTATACCATCTAGGAAGTGGGCACCGACTTTAAAGTGCTCC
AGCCAACAGCTGTAGATGAGACCTGGGAGGGGAGGTATTGAAACAACCCCTGCACCAGCGCACA
ATCCTAAGAGTCCCGGTTCCTTGACCATTCGCTCCAGTCTGCAGAAAGCCTCTCCCTTGGGTTG
GAGGGCAGAGAACTGAGAGGACAAAGATCTGTTCTTTGTGTTACACAGGGTCTGGTTTTAAAAG
CACAGAAAGAAACCTCTCCTCCCACCCTGGTCTTTGTAGCCATCCTTGTCCTCTGAAATGAGGA
ACCAATCCTCTTTAAAAGTTCCCAAATAGTTTTCTGCCATATTTAGAAAGTGTACCTTTAACCT
GGTGTTGGTGGGATATGCCTTTAATACCAGCACTCAGGAAGCAGAGAGACAGGTGGATCTCCGA
GATCAAGGCCAGCATGGTCTACAGATCGAGTTCCAGGAAGCCAGCGCTACGCAGAGAAACTCTA
TCTCCAAAAAACTGAAGGAAGGAAGGAAAGAAGAAAGGAAGGAAGGAAGAAAGGAAGGAAGAAG
AGAAAGTCTACCTTCTTGATGACAGCAGCTAAGCCATGAGCTCCCAGCACACACCTGAACAGTG
ACTGACCTGCTCTCACTCGATCTGGGGAAGAAAGATACACAGATGTTTGGTTTGGCCAGCTGAC
CAGGAAGCAAAAGGCCTCTTCCCAGTCCATAGGAGAATTGAACTGAACTAATGTTCTCTGTCTG
TGAGAAAGACTCCTAACATGCGTTAACATATTTGTATGTATTCATACCCAGACCTGGGCCAGAT
GTGCCTAGTAGATAGACTTGCAGGGTCATGCAGGCCGGACTCGTTGCCTTAATTCAAGAACCTG
TGTCTATGTGTATGTACACATACTTCTGTCAGGGCAGTGGGGAGGGAGAGAGGGAGAGAGGCGC
CCACCATGGGTCTCTGAAATATTCCTGAGGCTAGATAAGCCTAGAGGGAGGATACGGAGGCAGC
CTCAGGGCTTTGATTATGATCTAAGCCCCATTTTAGGTAGACTCCCTAGGATACTGCCAAACCC
AGTTTAAGAGTTTAAAACTGGAGAACTGGGCTGAGGAACTGACTCAGAAGACAAGCCTGACTAC
CTGAGTTCAGCCTAACTCCTGCTGTAAAAGGAGAGAACGGACAATAGGGTAAGCCCTTTAAGAT
TACCCAGCTGCCTCCCTGCACACACGCTCTGAGTGTAGCCCGAACGGGAAAACCATGTTCTATG
CTGGCAGAGATGTGCTTGGCACACGAATGACATTACACGCTGATAACCTGCCAGCACACGTATG
GGGAAGGGCTTTCATCTCAGTAATTCTCTTGTTCTAAGAAGATCAACTCCAGCTACCGTGAGGT
GAGTTTTTCCTGATTTGCCAGAGAAGGTGGGGAATGAAGTGGGGCTCAGCTTCCCTCTCAGAGC
CTGTGCCCGAATCATTCGTTTTCTCTGGGTGAAAGGTCCTGGTGAGAGCTTCAGGGCTCCCCAG
ACGCCCATCTCCATGCCAATTCTTTTGTTTCTTTTCCTTGGCAATGCTGAAGCTAGAACCCAGG
GCCCCAAGCATACTAAGTAAGCATTCTTCCTCAGCTCTATCCTCGGTCTTCAGCCAGCCGGGTG
ACCTTGAATAAGCTGCTGCCTACCCCACTGAGCCTCAGTGTTTTCTGTGTAAGGGTGATGTAAT
GCCTACCTCTAAGGTCACTTTAATAATAAGCACAGACATATGGAAAGTGCCTGACACCAAGTAG
GTGCTCAATAAAAGATAGCTATTGTAGTAGTGTTTGCTGTTCTCTTGCTTAAATTCAAGAATTC
TTAGGGGTTTAAAAAGACTTATTGATGCATGAATGTTTGCCCGCCTGTATGTATGTATGTATGT
ACGTATGTATGTATGCATGCATGCAACCACATGCATGCCTGGTATTTATGGAGGTTGGAAAAGG
GCATCAGATCCCCTGGAACTAATGTTTTAGATGGTTGTGAGCCACCATGTGGACGCTGGGAAAT
GGATCCAGGTTCTCTATAAAAGCAAAAAAAAAAAAAAAAAAAAAAAGCTCTTAACTGCTGAACC
ATCTTTCCAGCCCCTTCTGGCCTTATCCTGTCCTCCGACTCTTGTGCAATCCAGACTTGTCTCT
CTCCCTGTACGTTGGATCTGGGAAGCCTAGCATTGCCCCAGTAGGCCTCAAGCAGCCTTGTAAC
CACAGCTCACTGGTCTCCCTGCACTTAGGCTCTTGTGGGTGTGTTGGTGACATACAGCAATCAG
GAGGGGAGATCTGAATGGCCACTGAAGGGGGCTCGGGATGGGGTTTGAATGGATTGAACTTTAG
CCAAATGGGTTTTCTCGGAGAATTTTGGCCACCATCCCCCAACTTGTGAGCAAAGTATCTCTGA
TTATTGCTCTGGATCTGGTGCAAGGATTCTTCTGGTTCTTCTCACCAAGCACCCAGGAGTCCTC
TCCTTCCCCAAACCCAGGGTGGGCACTGACCTCTCCAATCCTCAGGCCACCATTAAACAAAGAC
ACACAGGGTGCTTTTGCTAAAAGCATTGACTGTTCACTTGGCCCTCCAGGTGCCTAATGGGTTA
ATTAAAAACCAGAACAAAAGCTTGGTATGGTGCCTCCAGTTTGCTCCAATTTGCACCTGTTTCC
TTTGCACGGAGTCATTACTGTCTGGTGGATTCCAGGAACAACAGAGCCCCTGGATAAACATCTG
TGACAAGGGTCAAAACTACCCCTACTCCCGGCCACTGAACAAAGCTTGCAAAACCAATCCCAAG
ATAATGATCAACCAGACCATAGTTTGACCAAGGCTGATTAGTACGTGTTTCTTGTGTTTCTCGC
TCCAGCTTCTGTCCCTAGTCCTTGTGTCAGTTGGGAGCTCCTGTGAGGGCCTCTAATGCCAAGG
CTGACTGCATCATCCCCCTTCTCTTCCTGTGTATAGTTCTGCTGATTAAAGTTCCTTTCCTGTT
TTTCA

hide sequence

RefSeq Acc Id:

XM_008763637 ⟹ XP_008761859

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	57,873,404 - 57,882,008 (-)	NCBI

Sequence:

show sequence

GGAGGGCGGGGCGCAGGAGGGGCTCCACGGTGCCCAGCCAGGCAGCACCCCGCAGGGCTGTGGC
TGATCAACTCCTGCTAGCGTGGAGAGAGGATCAGCTGGAGGACCCTTCTTCCCTTCTTTGTGGC
GGTCACTGAGAGTTCTCACCGATTTGGCAAGCCGTGGGGCCTGAGAGAAACAAGGGTAAGACAC
CAGCTGTCCTGGACAAGAGTCCTGCCTTTGACATTTGTCAAGCTCTCAGCTCCTCTACTAGGCT
GCAGAAATGGAAATACTGTGAAACAACAACAACAACAAAATCAGTTTCTTCTCTCACCCCTTTG
CAGACATCAGCACGACAGTTTCAGATGGGCCCTGGTGTGGTGGTTCCTTTCTTAGCTAGGAACT
GATGCCCCAGAACCTTCAGGAGAAGAGCCAGGTCTACCCCAGACATCGACTTGGTAGCCACGCA
GGCCCTAAAAGTCTCGAAGTTATCCCAGGAGCAACCATGTACACTTTCCTGCCTGACAATTTTT
CACCTGCCAAACCCAAGCCCACTAAAGAGCTGAGGCCTCTGCTATGCTCCGTGGTACTGGGACT
GCTGCTGGTGCTGGCCGCAGTTGTGGCCTGGTGCTACTATAGCGCCTCCTTACGCAAAGCTGAA
CGCCTGCGCGCAGAGCTGCTGGACCTGAACCGTGGCGGCTTCTCCATCCGTAACCAGAAGGGTG
AGCAAGTCTTCCGCTTGGCCTTCCGTTCGGGTGCGCTGGATCTTGACTCCTGTAGCCGGGACGG
TGCCCTGCTTGGCTGCTCCCGAACGGCCGATGGGCGCCCGTTGCACTTCTTTATCCAGACTGTA
CGACCCAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGGAAGCTGCACCAGGGCGTGCTG
TAGAGCACGCGATGTTTCTGGGAGATGCTGCAGCGCACTGGTATGGTGGCGCAGAGATGAGGAC
GCAACACTGGCCCATCCGCCTAGATGGCCAGCAAGAGCCGCAGCCATTTGTCACGAGCGACGTC
TACTCTTCTGACGCCGCATTCGGGGGCATCCTTGAGCGCTACTGGCTATCTTCCCGCGCGGCCG
CCATCAAAGTCAATGATTCAGTGCCCTTCCACCTGGGCTGGAACAGCACCGAGCGTTCGATGAG
ATTGCAGGCACGCTACCACCACACATCTTACAAGCCACCAGCCGGCCGGACTGCAGCGCCAGAG
CTCAGCTACCGCGTGTGCGTGGGCTCAGATGTCACCTCCATCCACAAGTACATGGTTCGACGTT
ACTTCAACAAACCGTCCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGTCCACGTG
GGCTCTATATGGGCGCTCTGTGGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGCCAG
CACCGCTTCAACAGCAGCCATCTGGAAATCGATGACATGTACACGCCGGCCTATGGTGACTTTG
ATTTCGACGAGAGCAAGTTCCCCAACGCCACTGACCTGTTCCACCGCCTGCGAGATGCTGGCTT
CCGCGTCACACTTTGGGTGCATCCGTTTGTCAACTATAACTCGTCGCGTTTCGGCGAAGGTGTG
GAGCGCGAGCTGTTCGTGCGGGAGCCCACGGGCCGCCTGCCCGCGCTCGTGCGCTGGTGGAACG
GCATTGGCGCGGTGCTGGACTTCACGCGCCCAGAGGCCCGAGAGTGGTTCCAGGGACACCTACG
GCGCCTGCGCTCGCGCTACAACGTGGCCTCCTTTAAGTTCGACGCGGGTGAAGTCAGCTACCTG
CCCCCGGACTTCAGCACCTACAAGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGGTACACCG
AGATGGCGCTGCCCTTCTTCTCGCTAGCCGAAGTCCGCGTGGGGTACCAGTCACAGAACATCTC
CTGCTTCTTCCGTCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTC
ATCCCTGCGGTGCTCACCGTCAGTATGCTGGGCTATCCGTTCATCTTACCTGATATGATAGGTG
GCAACGCGGTGCCGGAGCGCACAGCGGGCCGCCCAGATGGGCCGGGGCCAGAGCGCGAACTCTA
CGTGCGCTGGCTGGAGGTGGCCGCCTTCATGCCTGCCATGCAGTTTTCAATCCCTCCTTGGCAG
TATGACGCAGAAGTGGTAGCCATCGCACATAAATTCGCTGCTCTGCGCGCCTCCCTCGTGGCGC
CACTGCTGCTGGAGCTTGCTGGTGAGGTCACCGACACGGGCGACCCCATCGTGCGCCCCCTGTG
GTGGATCGCACCCGGGGATGAAACGGCTCACCGCATTGACTCACAGTTCCTCATCGGGGACACG
CTGTTGGTGGCACCGGTACTGGAACCTGGTAAGCAAGAGCGCGATGTCTACCTGCCTGCCGGCA
AATGGCGAAGTTACAAGGGTGAGCTTTTTGACAAGACGCCTGTGCTGCTCACGGATTACCCTGT
CGACCTGGATGAGGTCGCCTATTTCACCTGGGCTTCCTGACCCAGCTCAGAACCTAGGAATCCC
ACAGCCCTAACCCCAGCCTTCATACAAACTTTTAATCCTCTACCACGCGCGAACGGTGAACCCT
CAGGAAGACCCCACCTCTATACCATCTAGGAAGTGGGCACCGACTTTAAAGTGCTCCAGCCAAC
AGCTGTAGATGAGACCTGGGAGGGGAGGTATTGAAACAACCCCTGCACCAGCGCACAATCCTAA
GAGTCCCGGTTCCTTGACCATTCGCTCCAGTCTGCAGAAAGCCTCTCCCTTGGGTTGGAGGGCA
GAGAACTGAGAGGACAAAGATCTGTTCTTTGTGTTACACAGGGTCTGGTTTTAAAAGCACAGAA
AGAAACCTCTCCTCCCACCCTGGTCTTTGTAGCCATCCTTGTCCTCTGAAATGAGGAACCAATC
CTCTTTAAAAGTTCCCAAATAGTTTTCTGCCATATTTAGAAAGTGTACCTTTAACCTGGTGTTG
GTGGGATATGCCTTTAATACCAGCACTCAGGAAGCAGAGAGACAGGTGGATCTCCGAGATCAAG
GCCAGCATGGTCTACAGATCGAGTTCCAGGAAGCCAGCGCTACGCAGAGAAACTCTATCTCCAA
AAAACTGAAGGAAGGAAGGAAAGAAGAAAGGAAGGAAGGAAGAAAGGAAGGAAGAAGAGAAAGT
CTACCTTCTTGATGACAGCAGCTAAGCCATGAGCTCCCAGCACACACCTGAACAGTGACTGACC
TGCTCTCACTCGATCTGGGGAAGAAAGATACACAGATGTTTGGTTTGGCCAGCTGACCAGGAAG
CAAAAGGCCTCTTCCCAGTCCATAGGAGAATTGAACTGAACTAATGTTCTCTGTCTGTGAGAAA
GACTCCTAACATGCGTTAACATATTTGTATGTATTCATACCCAGACCTGGGCCAGATGTGCCTA
GTAGATAGACTTGCAGGGTCATGCAGGCCGGACTCGTTGCCTTAATTCAAGAACCTGTGTCTAT
GTGTATGTACACATACTTCTGTCAGGGCAGTGGGGAGGGAGAGAGGGAGAGAGGCGCCCACCAT
GGGTCTCTGAAATATTCCTGAGGCTAGATAAGCCTAGAGGGAGGATACGGAGGCAGCCTCAGGG
CTTTGATTATGATCTAAGCCCCATTTTAGGTAGACTCCCTAGGATACTGCCAAACCCAGTTTAA
GAGTTTAAAACTGGAGAACTGGGCTGAGGAACTGACTCAGAAGACAAGCCTGACTACCTGAGTT
CAGCCTAACTCCTGCTGTAAAAGGAGAGAACGGACAATAGGGTAAGCCCTTTAAGATTACCCAG
CTGCCTCCCTGCACACACGCTCTGAGTGTAGCCCGAACGGGAAAACCATGTTCTATGCTGGCAG
AGATGTGCTTGGCACACGAATGACATTACACGCTGATAACCTGCCAGCACACGTATGGGGAAGG
GCTTTCATCTCAGTAATTCTCTTGTTCTAAGAAGATCAACTCCAGCTACCGTGAGGTGAGTTTT
TCCTGATTTGCCAGAGAAGGTGGGGAATGAAGTGGGGCTCAGCTTCCCTCTCAGAGCCTGTGCC
CGAATCATTCGTTTTCTCTGGGTGAAAGGTCCTGGTGAGAGCTTCAGGGCTCCCCAGACGCCCA
TCTCCATGCCAATTCTTTTGTTTCTTTTCCTTGGCAATGCTGAAGCTAGAACCCAGGGCCCCAA
GCATACTAAGTAAGCATTCTTCCTCAGCTCTATCCTCGGTCTTCAGCCAGCCGGGTGACCTTGA
ATAAGCTGCTGCCTACCCCACTGAGCCTCAGTGTTTTCTGTGTAAGGGTGATGTAATGCCTACC
TCTAAGGTCACTTTAATAATAAGCACAGACATATGGAAAGTGCCTGACACCAAGTAGGTGCTCA
ATAAAAGATAGCTATTGTAGTAGTGTTTGCTGTTCTCTTGCTTAAATTCAAGAATTCTTAGGGG
TTTAAAAAGACTTATTGATGCATGAATGTTTGCCCGCCTGTATGTATGTATGTATGTACGTATG
TATGTATGCATGCATGCAACCACATGCATGCCTGGTATTTATGGAGGTTGGAAAAGGGCATCAG
ATCCCCTGGAACTAATGTTTTAGATGGTTGTGAGCCACCATGTGGACGCTGGGAAATGGATCCA
GGTTCTCTATAAAAGCAAAAAAAAAAAAAAAAAAAAAAAGCTCTTAACTGCTGAACCATCTTTC
CAGCCCCTTCTGGCCTTATCCTGTCCTCCGACTCTTGTGCAATCCAGACTTGTCTCTCTCCCTG
TACGTTGGATCTGGGAAGCCTAGCATTGCCCCAGTAGGCCTCAAGCAGCCTTGTAACCACAGCT
CACTGGTCTCCCTGCACTTAGGCTCTTGTGGGTGTGTTGGTGACATACAGCAATCAGGAGGGGA
GATCTGAATGGCCACTGAAGGGGGCTCGGGATGGGGTTTGAATGGATTGAACTTTAGCCAAATG
GGTTTTCTCGGAGAATTTTGGCCACCATCCCCCAACTTGTGAGCAAAGTATCTCTGATTATTGC
TCTGGATCTGGTGCAAGGATTCTTCTGGTTCTTCTCACCAAGCACCCAGGAGTCCTCTCCTTCC
CCAAACCCAGGGTGGGCACTGACCTCTCCAATCCTCAGGCCACCATTAAACAAAGACACACAGG
GTGCTTTTGCTAAAAGCATTGACTGTTCACTTGGCCCTCCAGGTGCCTAATGGGTTAATTAAAA
ACCAGAACAAAAGCTTGGTATGGTGCCTCCAGTTTGCTCCAATTTGCACCTGTTTCCTTTGCAC
GGAGTCATTACTGTCTGGTGGATTCCAGGAACAACAGAGCCCCTGGATAAACATCTGTGACAAG
GGTCAAAACTACCCCTACTCCCGGCCACTGAACAAAGCTTGCAAAACCAATCCCAAGATAATGA
TCAACCAGACCATAGTTTGACCAAGGCTGATTAGTACGTGTTTCTTGTGTTTCTCGCTCCAGCT
TCTGTCCCTAGTCCTTGTGTCAGTTGGGAGCTCCTGTGAGGGCCTCTAATGCCAAGGCTGACTG
CATCATCCCCCTTCTCTTCCTGTGTATAGTTCTGCTGATTAAAGTTCCTTTCCTGTTTTTCA

hide sequence

RefSeq Acc Id:

XR_005504505

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	56,654,257 - 56,664,467 (-)	NCBI

RefSeq Acc Id:

XR_005504506

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	56,654,257 - 56,664,467 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102441	(Get FASTA)	NCBI Sequence Viewer
	XP_006238156	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98671	(Get FASTA)	NCBI Sequence Viewer
	EDL98672	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102441 ⟸ NM_001108971

- UniProtKB:

D4AE63 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPQNLQEKSQVYPRHRLGSHAGPKSLEVIPGATMYTFLPDNFSPAKPKPTKELRPLLCSVVLGL
LLVLAAVVAWCYYSASLRKAERLRAELLDLNRGGFSIRNQKGEQVFRLAFRSGALDLDSCSRDG
ALLGCSRTADGRPLHFFIQTVRPKDTVMCYRVRWEEAAPGRAVEHAMFLGDAAAHWYGGAEMRT
QHWPIRLDGQQEPQPFVTSDVYSSDAAFGGILERYWLSSRAAAIKVNDSVPFHLGWNSTERSMR
LQARYHHTSYKPPAGRTAAPELSYRVCVGSDVTSIHKYMVRRYFNKPSRVPASEAFRDPIWSTW
ALYGRSVDQNKVLQFAQQIRQHRFNSSHLEIDDMYTPAYGDFDFDESKFPNATDLFHRLRDAGF
RVTLWVHPFVNYNSSRFGEGVERELFVREPTGRLPALVRWWNGIGAVLDFTRPEAREWFQGHLR
RLRSRYNVASFKFDAGEVSYLPPDFSTYKPLSDPSVWSRRYTEMALPFFSLAEVRVGYQSQNIS
CFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMIGGNAVPERTAGRPDGPGPERELY
VRWLEVAAFMPAMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEVTDTGDPIVRPLW
WIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVLLTDYPV
DLDEVAYFTWAS

hide sequence

RefSeq Acc Id:	XP_006238156 ⟸ XM_006238094
- Peptide Label:	isoform X1
- UniProtKB:	D4AE63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPQNLQEKSQVYPRHRLGSHAGPKSLEVIPGATMYTFLPDNFSPAKPKPTKELRPLLCSVVLGL LLVLAAVVAWCYYSASLRKAERLRAELLDLNRGGFSIRNQKGEQVFRLAFRSGALDLDSCSRDG ALLGCSRTADGRPLHFFIQTVRPKDTVMCYRVRWEEAAPGRAVEHAMFLGDAAAHWYGGAEMRT QHWPIRLDGQQEPQPFVTSDVYSSDAAFGGILERYWLSSRAAAIKVNDSVPFHLGWNSTERSMR LQARYHHTSYKPPAGRTAAPELSYRVCVGSDVTSIHKYMVRRYFNKPSRVPASEAFRDPIWSTW ALYGRSVDQNKVLQFAQQIRQHRFNSSHLEIDDMYTPAYGDFDFDESKFPNATDLFHRLRDAGF RVTLWVHPFVNYNSSRFGEGVERELFVREPTGRLPALVRWWNGIGAVLDFTRPEAREWFQGHLR RLRSRYNVASFKFDAGEVSYLPPDFSTYKPLSDPSVWSRRYTEMALPFFSLAEVRVGYQSQNIS CFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMIGGNAVPERTAGRPDGPGPERELY VRWLEVAAFMPAMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEVTDTGDPIVRPLW WIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVLLTDYPV DLDEVAYFTWAS hide sequence

RefSeq Acc Id:

XP_008761859 ⟸ XM_008763637

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPQNLQEKSQVYPRHRLGSHAGPKSLEVIPGATMYTFLPDNFSPAKPKPTKELRPLLCSVVLGL
LLVLAAVVAWCYYSASLRKAERLRAELLDLNRGGFSIRNQKGEQVFRLAFRSGALDLDSCSRDG
ALLGCSRTADGRPLHFFIQTVRPKDTVMCYRVRWEEAAPGRAVEHAMFLGDAAAHWYGGAEMRT
QHWPIRLDGQQEPQPFVTSDVYSSDAAFGGILERYWLSSRAAAIKVNDSVPFHLGWNSTERSMR
LQARYHHTSYKPPAGRTAAPELSYRVCVGSDVTSIHKYMVRRYFNKPSRVPASEAFRDPIWSTW
ALYGRSVDQNKVLQFAQQIRQHRFNSSHLEIDDMYTPAYGDFDFDESKFPNATDLFHRLRDAGF
RVTLWVHPFVNYNSSRFGEGVERELFVREPTGRLPALVRWWNGIGAVLDFTRPEAREWFQGHLR
RLRSRYNVASFKFDAGEVSYLPPDFSTYKPLSDPSVWSRRYTEMALPFFSLAEVRVGYQSQNIS
CFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMIGGNAVPERTAGRPDGPGPERELY
VRWLEVAAFMPAMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEVTDTGDPIVRPLW
WIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVLLTDYPV
DLDEVAYFTWAS

hide sequence

RefSeq Acc Id:

ENSRNOP00000033466 ⟸ ENSRNOT00000033235

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693651

Promoter ID:

EPDNEW_R4176

Type:

multiple initiation site

Name:

Myorg_1

Description:

myogenesis regulating glycosidase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	57,881,947 - 57,882,007	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	62405963	62405964	C	G	snv	IS-Tlk/Kyo (KyushuU)
5	62405966	62405967	C	G	snv	IS-Tlk/Kyo (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309821	AgrOrtholog
Ensembl Genes	ENSRNOG00000023208	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000033466	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033235	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Glyco_hydro_31	UniProtKB/TrEMBL
	Glyco_hydro_catalytic_core	UniProtKB/TrEMBL
KEGG Report	rno:366360	UniProtKB/TrEMBL
NCBI Gene	366360	ENTREZGENE
Pfam	Glyco_hydro_31	UniProtKB/TrEMBL
PhenoGen	Myorg	PhenoGen
Superfamily-SCOP	Glyco_hydro_cat	UniProtKB/TrEMBL
UniProt	D4AE63	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-09	Myorg	myogenesis regulating glycosidase	RGD1309821	similar to KIAA1161 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1309821	similar to KIAA1161 protein	RGD1309821_predicted	similar to KIAA1161 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1309821_predicted	similar to KIAA1161 protein (predicted)	LOC366360_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC366360_predicted	similar to KIAA1161 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM