Tex48 (testis expressed 48) - Rat Genome Database

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Gene: Tex48 (testis expressed 48) Rattus norvegicus
Analyze
Symbol: Tex48
Name: testis expressed 48
RGD ID: 1584073
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC100363985; hypothetical protein LOC688893; LOC688893; testis-expressed protein 48; uncharacterized protein LOC688893
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2577,017,167 - 77,033,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl577,017,167 - 77,033,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx579,415,143 - 79,430,317 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0581,232,336 - 81,247,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0581,207,827 - 81,223,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0579,421,710 - 79,423,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0583,535,709 - 83,537,133 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4580,571,257 - 80,581,828 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera575,950,885 - 75,967,043 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Tex48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2577,017,167 - 77,033,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl577,017,167 - 77,033,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx579,415,143 - 79,430,317 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0581,232,336 - 81,247,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0581,207,827 - 81,223,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0579,421,710 - 79,423,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0583,535,709 - 83,537,133 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4580,571,257 - 80,581,828 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera575,950,885 - 75,967,043 (-)NCBICelera
Cytogenetic Map5q24NCBI
TEX48
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389114,666,434 - 114,682,192 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9114,666,434 - 114,682,192 (-)EnsemblGRCh38hg38GRCh38
GRCh379117,428,714 - 117,444,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera988,076,361 - 88,091,976 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef987,033,336 - 87,049,010 (-)NCBIHuRef
CHM1_19117,575,303 - 117,590,958 (-)NCBICHM1_1
T2T-CHM13v2.09126,858,843 - 126,874,605 (-)NCBIT2T-CHM13v2.0
Tex48
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39463,525,326 - 63,540,670 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl463,525,326 - 63,540,665 (-)EnsemblGRCm39 Ensembl
GRCm38463,607,089 - 63,622,433 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl463,607,089 - 63,622,428 (-)EnsemblGRCm38mm10GRCm38
MGSCv37463,268,125 - 63,283,463 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36463,093,452 - 63,108,790 (-)NCBIMGSCv36mm8
Celera462,267,130 - 62,282,458 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map434.03NCBI
Tex48
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541912,972,024 - 12,985,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541912,969,338 - 12,982,474 (+)NCBIChiLan1.0ChiLan1.0
TEX48
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1924,697,766 - 24,713,928 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0985,763,720 - 85,779,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19114,126,193 - 114,141,871 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9114,126,193 - 114,141,871 (-)Ensemblpanpan1.1panPan2
TEX48
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11168,805,493 - 68,814,760 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1168,805,491 - 68,809,132 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1167,207,085 - 67,216,284 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01169,928,973 - 69,938,201 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1169,928,971 - 69,932,644 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11168,444,011 - 68,453,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01168,484,224 - 68,493,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01169,215,455 - 69,224,685 (-)NCBIUU_Cfam_GSD_1.0
Tex48
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947184,089,166 - 184,103,070 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364873,857,913 - 3,868,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX48
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,207,375 - 255,214,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,207,373 - 255,211,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21286,274,749 - 286,283,329 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX48
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11224,909,119 - 24,924,396 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603517,907,091 - 17,913,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tex48
64 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1598845Mcs14Mammary carcinoma susceptibility QTL 140.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57636977680813390Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000103630   ⟹   ENSRNOP00000091944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl577,017,167 - 77,033,673 (-)Ensembl
RefSeq Acc Id: NM_001399330   ⟹   NP_001386259
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2577,017,167 - 77,033,673 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386259 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10516 (Get FASTA)   NCBI Sequence Viewer  
  QHI05892 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000091944   ⟸   ENSRNOT00000103630
RefSeq Acc Id: NP_001386259   ⟸   NM_001399330
- UniProtKB: A0A6B9RUI8 (UniProtKB/TrEMBL),   A0A8I6AD27 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-41058 BioCyc
Ensembl Genes ENSRNOG00000066054 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000091944 ENTREZGENE
  ENSRNOP00000091944.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103630 ENTREZGENE
  ENSRNOT00000103630.1 UniProtKB/TrEMBL
NCBI Gene 688893 ENTREZGENE
PhenoGen Tex48 PhenoGen
UniProt A0A6B9RUI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AD27 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Tex48  testis expressed 48  Tex48  testis expressed 48  Data Merged 737654 PROVISIONAL
2021-08-09 Tex48  testis expressed 48      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-28 Tex48  testis expressed 48  LOC688893  hypothetical protein LOC688893  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 LOC688893  hypothetical protein LOC688893  LOC100363985  hypothetical protein LOC100363985  Data Merged 1643240 APPROVED
2010-05-06 LOC100363985  hypothetical protein LOC100363985      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC688893  hypothetical protein LOC688893  LOC682568  hypothetical protein LOC682568  Data Merged 1643240 APPROVED
2006-11-20 LOC682568  hypothetical protein LOC682568      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688893  hypothetical protein LOC688893      Symbol and Name status set to provisional 70820 PROVISIONAL