| 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 5 | 27955440 | 72955440 | Rat |
| 1298067 | Scl15 | Serum cholesterol level QTL 15 | 4.8 | 0.001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 33215665 | 78215665 | Rat |
| 1300115 | Hrtrt7 | Heart rate QTL 7 | 2.76 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 5 | 47869062 | 90099692 | Rat |
| 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat |
| 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 1 | 131345958 | Rat |
| 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | 0.003 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 18873947 | 74251464 | Rat |
| 1598814 | Mcs13 | Mammary carcinoma susceptibility QTL 13 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 63190890 | 69927503 | Rat |
| 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 12789751 | 113558310 | Rat |
| 61386 | Bp49 | Blood pressure QTL 49 | 16.6 | | cerebrum integrity trait (VT:0010549) | brain infarction volume (CMO:0001013) | 5 | 60293434 | 98603051 | Rat |
| 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 43726656 | 129132602 | Rat |
| 1598807 | Glom12 | Glomerulus QTL 12 | 2.7 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 33215665 | 78215665 | Rat |
| 1302786 | Kidm8 | Kidney mass QTL 8 | 28.15 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 5 | 33215665 | 78215665 | Rat |
| 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat |
| 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | 0.0073 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 5 | 28515489 | 73515489 | Rat |
| 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat |
| 1578767 | Stresp17 | Stress response QTL 17 | 4.3 | 0.01 | blood aldosterone amount (VT:0005346) | plasma aldosterone level (CMO:0000551) | 5 | 27955440 | 72955440 | Rat |
| 7411561 | Bw134 | Body weight QTL 134 | 24 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 49463600 | 94463600 | Rat |
| 1641922 | Alcrsp8 | Alcohol response QTL 8 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 5 | 35189153 | 68564008 | Rat |
| 2303615 | Vencon7 | Ventilatory control QTL 7 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 5 | 50983895 | 95983895 | Rat |
| 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 50328551 | 141643988 | Rat |
| 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 35189153 | 141643988 | Rat |
| 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat |
| 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | 0.0073 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 28515489 | 73515489 | Rat |
| 1576317 | Eutr2 | Estrogen induced uterine response QTL 2 | | 0.01 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 34730116 | 104251008 | Rat |
| 7394712 | Emca13 | Estrogen-induced mammary cancer QTL 13 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 9823266 | 99753708 | Rat |
| 1331773 | Scl26 | Serum cholesterol level QTL 26 | 3.065 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 43726656 | 86724018 | Rat |
| 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 55805606 | 132207589 | Rat |
| 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 729470 | 86724018 | Rat |
| 61359 | Eaex | Experimental allergic encephalomyelitis QTL x | 3 | | nervous system integrity trait (VT:0010566) | post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422) | 5 | 55715622 | 100715622 | Rat |
| 8662454 | Vetf3 | Vascular elastic tissue fragility QTL 3 | 27.4 | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 5 | 2282226 | 69540447 | Rat |
| 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 31663789 | 131345958 | Rat |
| 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat |
| 9589025 | Epfw7 | Epididymal fat weight QTL 7 | 20.66 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 5 | 49463600 | 94463600 | Rat |
| 2303574 | Gluco42 | Glucose level QTL 42 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 53496719 | 98496719 | Rat |
| 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 1 | 90450412 | Rat |
| 8552954 | Pigfal14 | Plasma insulin-like growth factor 1 level QTL 14 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 21226744 | 66226744 | Rat |
| 2316954 | Rf57 | Renal function QTL 57 | 0 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 59793528 | 90450144 | Rat |
| 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | 0.0003 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 58829236 | 128034027 | Rat |
| 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 34944474 | 113558310 | Rat |
| 2316957 | Pur21 | Proteinuria QTL 21 | 6.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 5 | 59793528 | 113558156 | Rat |
