Susd1 (sushi domain containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Susd1 (sushi domain containing 1) Rattus norvegicus
Analyze
Symbol: Susd1
Name: sushi domain containing 1
RGD ID: 1306966
Description: Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Orthologous to human SUSD1 (sushi domain containing 1); INTERACTS WITH 17beta-estradiol; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298031; sushi domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,952,781 - 79,076,121 (-)NCBIGRCr8
mRatBN7.2574,157,653 - 74,281,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,157,773 - 74,276,291 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0576,514,780 - 76,636,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,416,739 - 76,632,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,652,549 - 80,774,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,390,911 - 77,482,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,395,737 - 77,504,530 (-)NCBI
Celera572,977,842 - 73,098,844 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822  


Genomics

Comparative Map Data
Susd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,952,781 - 79,076,121 (-)NCBIGRCr8
mRatBN7.2574,157,653 - 74,281,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,157,773 - 74,276,291 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0576,514,780 - 76,636,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,416,739 - 76,632,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,652,549 - 80,774,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,390,911 - 77,482,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,395,737 - 77,504,530 (-)NCBI
Celera572,977,842 - 73,098,844 (-)NCBICelera
Cytogenetic Map5q24NCBI
SUSD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389112,040,783 - 112,175,297 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9112,040,783 - 112,175,297 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,803,063 - 114,937,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,842,882 - 113,977,377 (-)NCBINCBI36Build 36hg18NCBI36
Build 349111,882,616 - 112,017,111NCBI
Celera985,302,059 - 85,436,554 (-)NCBICelera
Cytogenetic Map9q31.3-q32NCBI
HuRef984,401,174 - 84,536,088 (-)NCBIHuRef
CHM1_19114,949,460 - 115,083,983 (-)NCBICHM1_1
T2T-CHM13v2.09124,212,182 - 124,346,454 (-)NCBIT2T-CHM13v2.0
Susd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,314,190 - 59,438,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,314,683 - 59,438,633 (-)EnsemblGRCm39 Ensembl
GRCm38459,314,202 - 59,439,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,314,683 - 59,438,633 (-)EnsemblGRCm38mm10GRCm38
MGSCv37459,327,555 - 59,451,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,423,264 - 59,532,681 (-)NCBIMGSCv36mm8
Celera459,231,835 - 59,355,798 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.5NCBI
Susd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,144,573 - 15,282,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,153,722 - 15,287,373 (+)NCBIChiLan1.0ChiLan1.0
SUSD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,256,423 - 27,406,734 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,259,224 - 27,394,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0983,170,775 - 83,305,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19111,327,684 - 111,445,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9111,327,686 - 111,445,044 (-)Ensemblpanpan1.1panPan2
SUSD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,566,392 - 66,699,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,491,791 - 66,699,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,980,687 - 65,107,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,705,654 - 67,832,827 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,656,739 - 67,832,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,220,502 - 66,347,159 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,243,789 - 66,371,033 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,984,906 - 67,115,079 (-)NCBIUU_Cfam_GSD_1.0
Susd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,919,818 - 182,056,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,241,656 - 1,344,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,210,323 - 1,344,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUSD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,781,491 - 252,956,179 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,819,956 - 252,956,513 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,608,946 - 283,742,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUSD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,355,791 - 27,470,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603515,310,181 - 15,446,670 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Susd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,812,917 - 22,929,109 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476022,799,124 - 22,933,831 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Susd1
618 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat

Markers in Region
D5Mgh11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,251,320 - 74,251,464 (+)MAPPERmRatBN7.2
Rnor_6.0576,608,035 - 76,608,178NCBIRnor6.0
Rnor_5.0580,745,804 - 80,745,947UniSTSRnor5.0
RGSC_v3.4577,484,155 - 77,484,299RGDRGSC3.4
RGSC_v3.4577,484,156 - 77,484,299UniSTSRGSC3.4
RGSC_v3.1577,489,268 - 77,489,412RGD
Celera573,070,369 - 73,070,512UniSTS
RH 3.4 Map5524.8UniSTS
RH 3.4 Map5524.8RGD
RH 2.0 Map5399.0RGD
SHRSP x BN Map544.5699RGD
Cytogenetic Map5q24UniSTS
BF408469  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,157,923 - 74,158,047 (+)MAPPERmRatBN7.2
Rnor_6.0576,515,114 - 76,515,237NCBIRnor6.0
Rnor_5.0580,652,883 - 80,653,006UniSTSRnor5.0
RGSC_v3.4577,390,762 - 77,390,885UniSTSRGSC3.4
Celera572,978,176 - 72,978,299UniSTS
RH 3.4 Map5520.0UniSTS
Cytogenetic Map5q24UniSTS
AI230851  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,163,749 - 74,163,951 (+)MAPPERmRatBN7.2
Rnor_6.0576,520,940 - 76,521,141NCBIRnor6.0
Rnor_5.0580,658,709 - 80,658,910UniSTSRnor5.0
RGSC_v3.4577,396,588 - 77,396,789UniSTSRGSC3.4
Celera572,984,006 - 72,984,207UniSTS
RH 3.4 Map5519.9UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07048397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01037091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085109   ⟹   ENSRNOP00000068702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,157,773 - 74,276,291 (-)Ensembl
Rnor_6.0 Ensembl576,416,739 - 76,632,462 (-)Ensembl
RefSeq Acc Id: NM_001427255   ⟹   NP_001414184
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,781 - 79,070,781 (-)NCBI
RefSeq Acc Id: XM_006238211   ⟹   XP_006238273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,073,457 (-)NCBI
mRatBN7.2574,157,653 - 74,277,397 (-)NCBI
Rnor_6.0576,514,780 - 76,634,046 (-)NCBI
Rnor_5.0580,652,549 - 80,774,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238212   ⟹   XP_006238274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,076,121 (-)NCBI
mRatBN7.2574,157,653 - 74,281,171 (-)NCBI
Rnor_6.0576,514,780 - 76,636,486 (-)NCBI
Rnor_5.0580,652,549 - 80,774,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238213   ⟹   XP_006238275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,073,456 (-)NCBI
mRatBN7.2574,157,653 - 74,277,395 (-)NCBI
Rnor_6.0576,514,780 - 76,634,046 (-)NCBI
Rnor_5.0580,652,549 - 80,774,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111046   ⟹   XP_038966974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,073,457 (-)NCBI
mRatBN7.2574,157,653 - 74,277,397 (-)NCBI
RefSeq Acc Id: XM_039111047   ⟹   XP_038966975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,074,043 (-)NCBI
mRatBN7.2574,157,653 - 74,277,406 (-)NCBI
RefSeq Acc Id: XM_039111048   ⟹   XP_038966976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,073,457 (-)NCBI
mRatBN7.2574,157,653 - 74,277,397 (-)NCBI
RefSeq Acc Id: XM_039111049   ⟹   XP_038966977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,952,792 - 79,059,147 (-)NCBI
mRatBN7.2574,157,653 - 74,264,877 (-)NCBI
RefSeq Acc Id: XM_039111050   ⟹   XP_038966978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,953,587 - 79,073,458 (-)NCBI
mRatBN7.2574,158,568 - 74,277,398 (-)NCBI
RefSeq Acc Id: XM_039111051   ⟹   XP_038966979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,978,639 - 79,073,458 (-)NCBI
mRatBN7.2574,193,541 - 74,277,398 (-)NCBI
RefSeq Acc Id: XM_039111052   ⟹   XP_038966980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,000,522 - 79,073,459 (-)NCBI
mRatBN7.2574,205,517 - 74,277,397 (-)NCBI
RefSeq Acc Id: XP_006238274   ⟸   XM_006238212
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JTG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238273   ⟸   XM_006238211
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238275   ⟸   XM_006238213
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000068702   ⟸   ENSRNOT00000085109
RefSeq Acc Id: XP_038966975   ⟸   XM_039111047
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JTG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966976   ⟸   XM_039111048
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038966974   ⟸   XM_039111046
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JTG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966977   ⟸   XM_039111049
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038966978   ⟸   XM_039111050
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038966979   ⟸   XM_039111051
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038966980   ⟸   XM_039111052
- Peptide Label: isoform X10
RefSeq Acc Id: NP_001414184   ⟸   NM_001427255
- Peptide Label: precursor
Protein Domains
EGF-like   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTG3-F1-model_v2 AlphaFold A0A0G2JTG3 1-634 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306966 AgrOrtholog
BioCyc Gene G2FUF-41151 BioCyc
Ensembl Genes ENSRNOG00000056819 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085109.2 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
  R-tyr_protein_phosphatases UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene 298031 ENTREZGENE
PANTHER SUSHI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SUSHI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PhenoGen Susd1 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056819 RatGTEx
SMART CCP UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A0G2JTG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Susd1  sushi domain containing 1   Susd1_predicted  sushi domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Susd1_predicted  sushi domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED