Coro2a (coronin 2A) - Rat Genome Database

Name: Coro2a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Coro2a (coronin 2A) Rattus norvegicus

Analyze

Symbol:

Coro2a

Name:

coronin 2A

RGD ID:

1309719

Description:

Predicted to enable actin filament binding activity. Predicted to be located in brush border. Predicted to be part of transcription repressor complex. Orthologous to human CORO2A (coronin 2A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',5,5'-tetrabromobisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coronin, actin binding protein 2A; coronin-2A; LOC313235

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CORO2A (coronin 2A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Coro2a (coronin, actin binding protein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Coro2a (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CORO2A (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CORO2A (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Coro2a (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CORO2A (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CORO2A (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Coro2a (coronin 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CORO2B (coronin 2B)	HGNC	OrthoDB
Homo sapiens (human):	EPN1 (epsin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CORO2A (coronin 2A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Coro2a (coronin, actin binding protein 2A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	coro2a (coronin, actin binding protein, 2A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CRN1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	coro2a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,825,630 - 60,881,917 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,828,247 - 60,859,035 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,799,206 - 62,829,895 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,618,572 - 64,649,265 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,587,986 - 64,618,675 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,154,526 - 62,210,797 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,156,839 - 62,187,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,682,213 - 66,737,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	63,121,905 - 63,152,843 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	63,122,086 - 63,153,022 (-)	NCBI
Celera	5	59,389,825 - 59,420,508 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation Ii (ISO)

congenital disorder of glycosylation type II (ISO)

congenital myasthenic syndrome 14 (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

myoepithelioma (ISO)

nephronophthisis (ISO)

thoracic aortic aneurysm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chlordecone (ISO)

chloroprene (ISO)

chrysene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

methapyrilene (ISO)

ozone (ISO)

panobinostat (ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

temozolomide (ISO)

tetraphene (ISO)

thioacetamide (EXP)

tributylstannane (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

brush border (ISO)

transcription repressor complex (ISO)

Molecular Function

actin filament binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12628926	PMID:19654210	PMID:22114352	PMID:24625528

Genomics

Comparative Map Data

Coro2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,825,630 - 60,881,917 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,828,247 - 60,859,035 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,799,206 - 62,829,895 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,618,572 - 64,649,265 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,587,986 - 64,618,675 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,154,526 - 62,210,797 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,156,839 - 62,187,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,682,213 - 66,737,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	63,121,905 - 63,152,843 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	63,122,086 - 63,153,022 (-)	NCBI
Celera	5	59,389,825 - 59,420,508 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

CORO2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	98,120,975 - 98,192,637 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	98,120,975 - 98,192,637 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	100,883,257 - 100,954,919 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	99,926,294 - 99,994,743 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	97,966,032 - 98,034,477	NCBI
Celera	9	71,397,550 - 71,469,269 (-)	NCBI		Celera
Cytogenetic Map	9	q22.33	NCBI
HuRef	9	70,483,409 - 70,555,156 (-)	NCBI		HuRef
CHM1_1	9	101,029,674 - 101,101,387 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	110,292,922 - 110,364,586 (-)	NCBI		T2T-CHM13v2.0

Coro2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	46,536,937 - 46,601,929 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	46,536,937 - 46,602,202 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	46,536,937 - 46,601,929 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	46,536,937 - 46,602,202 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	46,549,809 - 46,579,312 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	46,558,659 - 46,587,540 (-)	NCBI		MGSCv36	mm8
Celera	4	46,555,568 - 46,613,230 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	24.87	NCBI

Coro2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	27,348,452 - 27,388,965 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	27,323,164 - 27,386,488 (+)	NCBI	ChiLan1.0	ChiLan1.0

CORO2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	41,267,525 - 41,339,409 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	69,210,625 - 69,282,434 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	97,335,021 - 97,403,255 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	97,335,026 - 97,368,204 (-)	Ensembl	panpan1.1		panPan2

CORO2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	55,345,577 - 55,400,092 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	55,345,934 - 55,372,374 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	53,778,976 - 53,833,540 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	56,457,510 - 56,512,403 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	56,459,945 - 56,512,809 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	54,953,123 - 55,007,725 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	54,983,784 - 55,038,657 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	55,680,250 - 55,729,539 (-)	NCBI		UU_Cfam_GSD_1.0

Coro2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	170,272,327 - 170,316,358 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	6,820,063 - 6,848,371 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936524	6,819,641 - 6,845,854 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CORO2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	239,947,301 - 240,000,918 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	239,947,299 - 240,000,964 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	268,117,471 - 268,171,600 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CORO2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	41,226,972 - 41,294,742 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	41,227,349 - 41,295,468 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	38,266,023 - 38,333,941 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Coro2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	2,712,489 - 2,749,806 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624825	2,682,632 - 2,749,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Coro2a
290 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	78
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000011787
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		2	2		2			43		7
Low		10	42	26	19	26			31	25	34	11
Below cutoff		32	13	13		13	7	10		10			7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000011787 ⟹ ENSRNOP00000011787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,828,247 - 60,859,035 (-)	Ensembl
Rnor_6.0 Ensembl	5	62,157,149 - 62,187,930 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089789 ⟹ ENSRNOP00000072816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	62,156,839 - 62,186,372 (-)	Ensembl

RefSeq Acc Id:

NM_001012101 ⟹ NP_001012101

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,828,244 - 60,859,035 (-)	NCBI
Rnor_6.0	5	62,157,148 - 62,187,930 (-)	NCBI
Rnor_5.0	5	66,682,213 - 66,737,392 (-)	NCBI
RGSC_v3.4	5	63,121,905 - 63,152,843 (-)	RGD
Celera	5	59,389,825 - 59,420,508 (-)	NCBI

Sequence:

show sequence

CAAAATCAGAACTCTCAGGGCCTTACCCATAGCCTGTGGTAGAGCGACGAACTTGTCCCTGTGT
GTCTGGAATGTCCTCAGGTTTGGGGTTTTAGGTTTGCTTTCATTTTTCTTGCAGTCCTAGACAT
TACACCTAGGGACTTGCGCATGATAGGCTATGTTAGAAGGTGGTGCTTCAGACCCTCCCACAAA
GCACTTACAGGGAGCGGCCTCTGTGCCCACAAGGTCAGATTTTAAGAGGAAGAAACAAAAGAAA
AACTTGAGCTAGCAGATGTGGAATGGCAACAGCAAACTCCGGCCCAGCCCACCTCTGCTCAAAC
CAAATCAGATGTCATGGCACCCCCAGTACCGCAGCTCCAAGTTCCGACACGTCTACGGCAAGCC
TGCCAGCAAGGAGAATTGCTACGACTCTGTGCCCATCACACGCAGCGTCCACGACAACCACTTC
TGTGCTGTGAACCCCCACTTCATCGCTGTGGTCACTGAATGTGCCGGTGGGGGCGCCTTCCTTG
TCATCCCCTTGCACCAGACGGGAAAGTTGGACCCTCACTACCCCAAGGTCTGTGGGCACAGAGG
GAACGTCTTGGACATCAAGTGGAATCCTTTCGATGACTTTGAGATTGCCTCCTGTTCAGAAGAT
GCCACGATTAAGATCTGGAACATCCCCAAGCAGCTGCTGACCAGGAACCTCACAACCTACAGGA
AGGAGTTGATGGGTCACGCACGCAGGGTGGGGCTGGTGGAGTGGCACCCCACAACTGCCAACAT
TCTCTTCAGTGCTGGCTATGATTACAAGGTGATGGTGTGGAACCTGGACACAAAGGACTCTGTA
ATTTCTGGGCCGGTGAGGACAATCAACTGTCACCAAGATGTGATCCTCTCCATGTCCTTCAACA
CCAACGGCAGCCTGCTGGCCACCACCTGTAAGGACCGCAAGATTCGGATTGTTGACCCCCGACT
AGGGATTGTCCTCCAGGAAGCCAGCTACAAGGGGCATCGGGCCAACAAAGTACTGTTCCTGGGG
AACCTCAAGAAGCTGCTATCCACGGGTACGTCCCGCTGGAACAACCGGCAGATGGCCCTGTGGG
ACCAGGACAACCTTTCTGTGCCCCTCACAGAGGAGGATTTGGATGGCTCCTCTGGTGTGCTATT
TCCCTTCTTCGACTCGGACACCAGCATGCTGTACATTGTGGGGAAGGGAGACGGGAACATCCGC
TACTATGAGGTGAGCACTGAGAAGCCTCACCTGACCTACCTGACTGAGTACCGCTCCTACAACC
CACAGAAGGGGATCGGTATCATGCCAAAGAGAGGTCTCGATGTGTCTTCCTGCGAGATCTTCCG
CTTCTACAAACTGATCACAACCAAAAGCCTCATCGAGCCGGTGTCCATGATTGTACCCCGGAGG
TCAGAATCCTACCAAGAGGACATCTACCCACCCACCGCAGCTGCCCAGCCCTCCCTGACGGCCC
ACGAGTGGCTCAGCGGAATGAACAGAGGGCCTATCATGATGTCCCTTAGACCCGGCTCCGAGCT
GCTGGATCCTCAGGCACTGCCTCCGGAGAGACTCCTCTCCAATTCTGTGGTCCAAGTTTCACCT
CAGCCCTTAGAACCCGTGAAACAGCCGGCCGAAGATGGTGACCAGGCACCCTTCTCTCTATTGG
AAGAGAAGGTAACGAAGTGGACCACGGAGCATCAGCTGGAGGAGAAGTCCTGGCTCACCAACGG
CTTTGACATTTTCGAATGCCCGCCACCAAAGACAGAAAATGAGCTGCTGCAGATGTTTTACCGG
CAACAGGAGGAGATCCGGAGGCTCCGGGAGCTGTTAATCCAGAGAGAGGTCCAGACCAAGCAGC
TGGAACTGGAGATCAAAAACCTGCGGATGGTCTTAGGACAGTTCTGAGCAGAGGTCTCCTCCAT
CCTTGCCCTCAGGGACACCGCTAGGCTCTGTGGAGAGGTCCAGAACCAAACCGCAGGTCCCCGA
GAACAACCACTATTTCTATATTTTATACCAGGAAAACAAAACTCTGTTTCTGAAAGAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238058 ⟹ XP_006238120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,825,630 - 60,881,917 (-)	NCBI
Rnor_6.0	5	62,154,526 - 62,210,797 (-)	NCBI
Rnor_5.0	5	66,682,213 - 66,737,392 (-)	NCBI

Sequence:

show sequence

CCCGGTCCCGCCCGCCGGGCTGCGCGGGGAGGCGGCGGCGCTGGGCGCGGGGACTCGGCGGGCG
GCGTGAAGCGCGGAGCGGGAGCCGGAGCCGCCGCCGCCGCCACCTGCGCGGCAGCCAACAAGAT
GTCATGGCACCCCCAGTACCGCAGCTCCAAGTTCCGACACGTCTACGGCAAGCCTGCCAGCAAG
GAGAATTGCTACGACTCTGTGCCCATCACACGCAGCGTCCACGACAACCACTTCTGTGCTGTGA
ACCCCCACTTCATCGCTGTGGTCACTGAATGTGCCGGTGGGGGCGCCTTCCTTGTCATCCCCTT
GCACCAGACGGGAAAGTTGGACCCTCACTACCCCAAGGTCTGTGGGCACAGAGGGAACGTCTTG
GACATCAAGTGGAATCCTTTCGATGACTTTGAGATTGCCTCCTGTTCAGAAGATGCCACGATTA
AGATCTGGAACATCCCCAAGCAGCTGCTGACCAGGAACCTCACAACCTACAGGAAGGAGTTGAT
GGGTCACGCACGCAGGGTGGGGCTGGTGGAGTGGCACCCCACAACTGCCAACATTCTCTTCAGT
GCTGGCTATGATTACAAGGTGATGGTGTGGAACCTGGACACAAAGGACTCTGTAATTTCTGGGC
CGGTGAGGACAATCAACTGTCACCAAGATGTGATCCTCTCCATGTCCTTCAACACCAACGGCAG
CCTGCTGGCCACCACCTGTAAGGACCGCAAGATTCGGATTGTTGACCCCCGACTAGGGATTGTC
CTCCAGGAAGCCAGCTACAAGGGGCATCGGGCCAACAAAGTACTGTTCCTGGGGAACCTCAAGA
AGCTGCTATCCACGGGTACGTCCCGCTGGAACAACCGGCAGATGGCCCTGTGGGACCAGGACAA
CCTTTCTGTGCCCCTCACAGAGGAGGATTTGGATGGCTCCTCTGGTGTGCTATTTCCCTTCTTC
GACTCGGACACCAGCATGCTGTACATTGTGGGGAAGGGAGACGGGAACATCCGCTACTATGAGG
TGAGCACTGAGAAGCCTCACCTGACCTACCTGACTGAGTACCGCTCCTACAACCCACAGAAGGG
GATCGGTATCATGCCAAAGAGAGGTCTCGATGTGTCTTCCTGCGAGATCTTCCGCTTCTACAAA
CTGATCACAACCAAAAGCCTCATCGAGCCGGTGTCCATGATTGTACCCCGGAGGTCAGAATCCT
ACCAAGAGGACATCTACCCACCCACCGCAGCTGCCCAGCCCTCCCTGACGGCCCACGAGTGGCT
CAGCGGAATGAACAGAGGGCCTATCATGATGTCCCTTAGACCCGGCTCCGAGCTGCTGGATCCT
CAGGCACTGCCTCCGGAGAGACTCCTCTCCAATTCTGTGGTCCAAGTTTCACCTCAGCCCTTAG
AACCCGTGAAACAGCCGGCCGAAGATGGTGACCAGGCACCCTTCTCTCTATTGGAAGAGAAGGT
AACGAAGTGGACCACGGAGCATCAGCTGGAGGAGAAGTCCTGGCTCACCAACGGCTTTGACATT
TTCGAATGCCCGCCACCAAAGACAGAAAATGAGCTGCTGCAGATGTTTTACCGGCAACAGGAGG
AGATCCGGAGGCTCCGGGAGCTGTTAATCCAGAGAGAGGTCCAGACCAAGCAGCTGGAACTGGA
GATCAAAAACCTGCGGATGGTCTTAGGACAGTTCTGAGCAGAGGTCTCCTCCATCCTTGCCCTC
AGGGACACCGCTAGGCTCTGTGGAGAGGTCCAGAACCAAACCGCAGGTCCCCGAGAACAACCAC
TATTTCTATATTTTATACCAGGAAAACAAAACTCTGTTTCTGAAAGAGACCCCACTGGGACATG
GTGCCGCTTTCCTGTCGCCTTCTCGAAGCTGCAGTTCCTGCCCTGGCTGGTTTAGATTACACCC
TACCTTCTGCTGAATTCTGATTTTAAGGGCTGGTGAGGAGCTATGACCTCCCAGAGGGGAAAAA
CTTGAAAGAGCTGGAAGGATTTGGGTAGGTCAACCTGCCTGTGGTTTGCAACTCTGGCCATAGA
CTAGGAGGCAGTTTTGCTCAGTGGGCTCATTCCAGAAGATACCCCCGGCTCCATCAGCCGGCTT
TGGAATAGCTACTTTGACAGCTAAATTATTTTTTAGAAGTTCGAAAAACGGGCTGGGGATTTAG
CTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAA
AAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGTTCGAAAAACACTGCACTGGTCATTTTATA
GTAAGGAAACTGAGGTCCAGAGAGAGAGAAGTAAGATCTGTTTCCTGGCAGGGCTGAACTGAGG
TCCTGTCCGTCTGGGTCTGTCTGACAATGCTGTTGCCAGTCCCCACAGTAAGATCCTTTGGTTC
TGCCTGCAGCTGTGTCCAGACTTATCTGATAACCTCTTACTGAATGCTTTTCTCTCTGGTCTCG
GTTTTTCCATTTGAGCAAGGGGAAGGTTCGAATGAGCTGCCCACTCTGTGACTTTCCACCAGAG
ACTAGATTTTGACCGTACCCTTTGACGTGATGACCTCAATTGAGTGCAGAAATTCAGTCTGGCA
GAGGGGCTCAATCTGAGAGGAATGAGTGAAGATTTAGCCCGATCCTAAACCACAGACAGGCGGC
CAAACCCATCCTTCCAACCAGAATCAGTCACATGTGGGTAGAATGTTCCATAGGTAGGGACACA
GACCCTCAGAGCCGTGTCCATGTCTGTTGTCTCCAGGAGGGCAGAAACATACTTCCACCCAGGG
TATCTAAAATCCTCTGGGAGGTGGGGGGGGGTGTCCAGTACTGGATGTGACAAAGCCACCAGTA
AGGACTCTGGTTGACTGCACTGGGTGAGAAAATGGGTCCAGATGGCACCTGGTCTGAAAGCCTG
CAGCCCTCCCTTGTGTGTCTTGTGCCCAATTCTGAGGCTCTTTTCTTTCTTGTTGTACAGCAAG
CCCAGCTGGTGCCTGAGAAGAACTTGAGACAAGGTTTACAGGAGATACCCCCACCCCCATCGCC
CCCTGAACAGATAGTGTTTCTCCATCACTCAGGGTCAGGCTGGAGCTCAAGGAAGAATTGCAAG
GGCCATCCAGGCTAACAGGTTTCAACCCACGTTGTCCATTCACACCCCCCTGGATGCACATACT
GATGACCAGGCCTGCCCACTGAAGCTGACCCTGCAGTGGGAGGTGTAGCCCTCTGGACAAGCTG
CCTCGGTGGCTTCCTTAAAATGGGGATGGAGGCACTTTTGCCTCATATCCTGCTCCTGTATTGG
CCATGAGTACAGAAGTACAAAGCCGGCTTGCACATGGCCACGTCACTCACCGTCGCTGGTATCT
GCACACACCAGAGTCCTGTGCTCCTTGGTTTGTTCTCTGTCACTACACTACACTACACTAGGAC
TCCATACTGTGCTATGCTCGCCTTATCTGAGTAAGAGTCTCCAGGCATCGACAGGGACCTGAAG
CCCCTGGGAAGGGGCTCTCTCATTTGTGACCAGTATGTCAGTTTGTAAAACTCCAACCCCATGT
TCAGAGGGTAGGATGGCCTCCTAGTGAAGAAACCAGCCCAAAAAAACACTGGCTGCCACATCTA
TGTGGCTAGATGTGGGGTCCAGGGAGCTTCTCATCCCATTTCTGCACAACACCATCCCCTTAAA
AAGGCTATCTCCACTGTAAGGGAACCAGACCTCACATTCAGGAACAGGTCACAGGCGGCTATGA
ACAAATTTATTTTTTGTTTTGTTTTTTTACATCTAGAATAAATTATTTAAATTATTTCATAGCA
AGGGAGAGGGATAGGTAATTTTTATCAGATATTTTTTTAAGTCATCTTTTTTTTTTTTTTTTAA
GATTTGTGTTTTTAGTTCTTGAGCTAATGGAGCAACACTGCCCACTAAGGCAGTGTCCACCCAA
GCAGCAAAGAGGCCCTCATCCCCTTCCTTCATGCCTTGGGAGCTCCCTTTCTGTTGACTCAGGA
ACTTCGTGTGGATGAGGAGAGTGCTTGGAGATGAGCTTGTACCCCCTTAACCCTAGAATAGTCC
TGCTTCCTGGAACAAAACTTGAGGTCGTGTCCCAGAGGGAAACAGGAAGCGAGAAACGGACCTG
CCTACGCTTTTCATCTGAAACCGTGCCTGAAGCTGTTTGAGTGATTGTTTTAATGTTTCTTAAA
TTCCTTGTACCTTTGTAAAAAAAAAAATAATTAAGAAATAAAAGTTAAAATAGATACAGAATCG
TGCAATGTGCAATGGGAGAATATGACAATCATCCGTGGGTGGTAATTCCCACCTTTAATCCCAG
CGCTTGGAAGGCTGAGGCAGGGGGATTGAGAATTTCAGACCAGCCTGGGCAAAGAGTCTGAGAC
CCTGCCTCAACCAAAATAATAATAAAACACCAGACTCGATATTGCAA

hide sequence

RefSeq Acc Id:

XM_017593364 ⟹ XP_017448853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,825,630 - 60,859,539 (-)	NCBI
Rnor_6.0	5	62,154,526 - 62,189,227 (-)	NCBI

Sequence:

show sequence

CCACCAAGCCAGGTGGACTCTGTCCTCTTTGTCATTGGGTTTGAGGGATTCTGTTTGTTCTGTC
AATCCCTTTCCAAGTCCTCGTCCTAGATCTCTCTCCATCGTCCCTGTTGCCCTTACCCGACCGA
TAGTGTCCTGATACATGAGTGTTTTACATGTCCTTTAAGCCCCCTGAGTCCAGTTTGACTTTTC
TCTTGTTGACTGCTTTTGGTCACCACCAAATCTAGTACCTTGAGTTTGGTCTTTTGTTTTTCAA
AGCATTTTATAGTTTCGGTCCTTCAGTGTAGCTCTTTGAGTCATTTTGAGTTGCTTGAAATTTC
AACCCACAGGATTTCCTGTGTTCTGGAGATTGCCAACTGCCTCCTGGTGAACACTTTCACCCGG
CTTGGTGTGACAGTGTACAGAGAAGCCCTGTCTTGCTTGGCACTGGGTTCGGGTTTTGTCAAGG
TCTCTTTGTAAGGAACGGGACACAAAATGGTTGCTTTTTTAGCTCTTGTGCTGCTAAGATTGAC
CCGTGTTTTCAGGGCTCCATTATATCTTTAAGCCTCAGACTTGATTACAGAGCATGAGCCCGTG
GGGAAGACTAATTAAGATACAACAGGTTCTGCCCTGCATTCTGGGGTGCCAGATTCTGTCTGGG
TAGGGTGGGGCAGGGCCCAAGAACATAGGGTTTTGGCAAGCTCTCTGGTGATGTCACTCTTTGG
AGACTACCATGAGCTGCTGTGTCCCCAGTCCCTGTAAGTCTCTCTTATCTTTATACTAAATACA
CACAGGAATCTCCTGGGGACCTGAGGGTGCGCTGGATTTGTTTCCTTGTTTTGTTTTGTTTACT
TTTTCGGAGGGAAGGCAATTCTGTGGCTCAGGCAGGTCTTGAACTTGTGTACCTGTCACCTCAG
CCTTTCAAGTGCTAGAATTAGAGAGGCTTGAACCGTTATGTCCAGCCAGTGGTAGAATTCAGTC
GATCCCAGTGTTCTGAGTCTCCAGCCATGCCGACCCTATTATCAGCCCTCGGGTTCACCATTCC
ACGTCTCCTCTCAGACTTGGCACTTCCAGAAAATGGACGACCTCAGAGAACAGTAACATGAGAG
TAGTGACCCAGACATTCATTCCTTGCCCTCCAGCCCTGGGTACTAAGTAAGCCCTGAGCCAGCC
CTTGGGTAGGGACTGGTGATTGAATGAAATCATAGTCACCTCTTTACAGACCTTCTGGAACTTT
GTGCTTTAGAATGTTCTAGTCTCTGGTTTAGGATGCTGGACTCGCTCGTTTCCATAGCTTTCTC
TTTCACAGACGAGTCGTCAAAATCAGAACTCTCAGGGCCTTACCCATAGCCTGTGGTAGAGCGA
CGAACTTGTCCCTGTGTGTCTGGAATGTCCTCAGGTTTGGGGTTTTAGGTTTGCTTTCATTTTT
CTTGCAGTCCTAGACATTACACCTAGGGACTTGCGCATGATAGGTCAGATTTTAAGAGGAAGAA
ACAAAAGAAAAACTTGAGCTAGCAGATGTGGAATGGCAACAGCAAACTCCGGCCCAGCCCACCT
CTGCTCAAACCAAATCAGATGTCATGGCACCCCCAGTACCGCAGCTCCAAGTTCCGACACGTCT
ACGGCAAGCCTGCCAGCAAGGAGAATTGCTACGACTCTGTGCCCATCACACGCAGCGTCCACGA
CAACCACTTCTGTGCTGTGAACCCCCACTTCATCGCTGTGGTCACTGAATGTGCCGGTGGGGGC
GCCTTCCTTGTCATCCCCTTGCACCAGACGGGAAAGTTGGACCCTCACTACCCCAAGGTCTGTG
GGCACAGAGGGAACGTCTTGGACATCAAGTGGAATCCTTTCGATGACTTTGAGATTGCCTCCTG
TTCAGAAGATGCCACGATTAAGATCTGGAACATCCCCAAGCAGCTGCTGACCAGGAACCTCACA
ACCTACAGGAAGGAGTTGATGGGTCACGCACGCAGGGTGGGGCTGGTGGAGTGGCACCCCACAA
CTGCCAACATTCTCTTCAGTGCTGGCTATGATTACAAGGTGATGGTGTGGAACCTGGACACAAA
GGACTCTGTAATTTCTGGGCCGGTGAGGACAATCAACTGTCACCAAGATGTGATCCTCTCCATG
TCCTTCAACACCAACGGCAGCCTGCTGGCCACCACCTGTAAGGACCGCAAGATTCGGATTGTTG
ACCCCCGACTAGGGATTGTCCTCCAGGAAGCCAGCTACAAGGGGCATCGGGCCAACAAAGTACT
GTTCCTGGGGAACCTCAAGAAGCTGCTATCCACGGGTACGTCCCGCTGGAACAACCGGCAGATG
GCCCTGTGGGACCAGGACAACCTTTCTGTGCCCCTCACAGAGGAGGATTTGGATGGCTCCTCTG
GTGTGCTATTTCCCTTCTTCGACTCGGACACCAGCATGCTGTACATTGTGGGGAAGGGAGACGG
GAACATCCGCTACTATGAGGTGAGCACTGAGAAGCCTCACCTGACCTACCTGACTGAGTACCGC
TCCTACAACCCACAGAAGGGGATCGGTATCATGCCAAAGAGAGGTCTCGATGTGTCTTCCTGCG
AGATCTTCCGCTTCTACAAACTGATCACAACCAAAAGCCTCATCGAGCCGGTGTCCATGATTGT
ACCCCGGAGGTCAGAATCCTACCAAGAGGACATCTACCCACCCACCGCAGCTGCCCAGCCCTCC
CTGACGGCCCACGAGTGGCTCAGCGGAATGAACAGAGGGCCTATCATGATGTCCCTTAGACCCG
GCTCCGAGCTGCTGGATCCTCAGGCACTGCCTCCGGAGAGACTCCTCTCCAATTCTGTGGTCCA
AGTTTCACCTCAGCCCTTAGAACCCGTGAAACAGCCGGCCGAAGATGGTGACCAGGCACCCTTC
TCTCTATTGGAAGAGAAGGTAACGAAGTGGACCACGGAGCATCAGCTGGAGGAGAAGTCCTGGC
TCACCAACGGCTTTGACATTTTCGAATGCCCGCCACCAAAGACAGAAAATGAGCTGCTGCAGAT
GTTTTACCGGCAACAGGAGGAGATCCGGAGGCTCCGGGAGCTGTTAATCCAGAGAGAGGTCCAG
ACCAAGCAGCTGGAACTGGAGATCAAAAACCTGCGGATGGTCTTAGGACAGTTCTGAGCAGAGG
TCTCCTCCATCCTTGCCCTCAGGGACACCGCTAGGCTCTGTGGAGAGGTCCAGAACCAAACCGC
AGGTCCCCGAGAACAACCACTATTTCTATATTTTATACCAGGAAAACAAAACTCTGTTTCTGAA
AGAGACCCCACTGGGACATGGTGCCGCTTTCCTGTCGCCTTCTCGAAGCTGCAGTTCCTGCCCT
GGCTGGTTTAGATTACACCCTACCTTCTGCTGAATTCTGATTTTAAGGGCTGGTGAGGAGCTAT
GACCTCCCAGAGGGGAAAAACTTGAAAGAGCTGGAAGGATTTGGGTAGGTCAACCTGCCTGTGG
TTTGCAACTCTGGCCATAGACTAGGAGGCAGTTTTGCTCAGTGGGCTCATTCCAGAAGATACCC
CCGGCTCCATCAGCCGGCTTTGGAATAGCTACTTTGACAGCTAAATTATTTTTTAGAAGTTCGA
AAAACGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTT
CGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGTTCGAAAAAC
ACTGCACTGGTCATTTTATAGTAAGGAAACTGAGGTCCAGAGAGAGAGAAGTAAGATCTGTTTC
CTGGCAGGGCTGAACTGAGGTCCTGTCCGTCTGGGTCTGTCTGACAATGCTGTTGCCAGTCCCC
ACAGTAAGATCCTTTGGTTCTGCCTGCAGCTGTGTCCAGACTTATCTGATAACCTCTTACTGAA
TGCTTTTCTCTCTGGTCTCGGTTTTTCCATTTGAGCAAGGGGAAGGTTCGAATGAGCTGCCCAC
TCTGTGACTTTCCACCAGAGACTAGATTTTGACCGTACCCTTTGACGTGATGACCTCAATTGAG
TGCAGAAATTCAGTCTGGCAGAGGGGCTCAATCTGAGAGGAATGAGTGAAGATTTAGCCCGATC
CTAAACCACAGACAGGCGGCCAAACCCATCCTTCCAACCAGAATCAGTCACATGTGGGTAGAAT
GTTCCATAGGTAGGGACACAGACCCTCAGAGCCGTGTCCATGTCTGTTGTCTCCAGGAGGGCAG
AAACATACTTCCACCCAGGGTATCTAAAATCCTCTGGGAGGTGGGGGGGGGTGTCCAGTACTGG
ATGTGACAAAGCCACCAGTAAGGACTCTGGTTGACTGCACTGGGTGAGAAAATGGGTCCAGATG
GCACCTGGTCTGAAAGCCTGCAGCCCTCCCTTGTGTGTCTTGTGCCCAATTCTGAGGCTCTTTT
CTTTCTTGTTGTACAGCAAGCCCAGCTGGTGCCTGAGAAGAACTTGAGACAAGGTTTACAGGAG
ATACCCCCACCCCCATCGCCCCCTGAACAGATAGTGTTTCTCCATCACTCAGGGTCAGGCTGGA
GCTCAAGGAAGAATTGCAAGGGCCATCCAGGCTAACAGGTTTCAACCCACGTTGTCCATTCACA
CCCCCCTGGATGCACATACTGATGACCAGGCCTGCCCACTGAAGCTGACCCTGCAGTGGGAGGT
GTAGCCCTCTGGACAAGCTGCCTCGGTGGCTTCCTTAAAATGGGGATGGAGGCACTTTTGCCTC
ATATCCTGCTCCTGTATTGGCCATGAGTACAGAAGTACAAAGCCGGCTTGCACATGGCCACGTC
ACTCACCGTCGCTGGTATCTGCACACACCAGAGTCCTGTGCTCCTTGGTTTGTTCTCTGTCACT
ACACTACACTACACTAGGACTCCATACTGTGCTATGCTCGCCTTATCTGAGTAAGAGTCTCCAG
GCATCGACAGGGACCTGAAGCCCCTGGGAAGGGGCTCTCTCATTTGTGACCAGTATGTCAGTTT
GTAAAACTCCAACCCCATGTTCAGAGGGTAGGATGGCCTCCTAGTGAAGAAACCAGCCCAAAAA
AACACTGGCTGCCACATCTATGTGGCTAGATGTGGGGTCCAGGGAGCTTCTCATCCCATTTCTG
CACAACACCATCCCCTTAAAAAGGCTATCTCCACTGTAAGGGAACCAGACCTCACATTCAGGAA
CAGGTCACAGGCGGCTATGAACAAATTTATTTTTTGTTTTGTTTTTTTACATCTAGAATAAATT
ATTTAAATTATTTCATAGCAAGGGAGAGGGATAGGTAATTTTTATCAGATATTTTTTTAAGTCA
TCTTTTTTTTTTTTTTTTAAGATTTGTGTTTTTAGTTCTTGAGCTAATGGAGCAACACTGCCCA
CTAAGGCAGTGTCCACCCAAGCAGCAAAGAGGCCCTCATCCCCTTCCTTCATGCCTTGGGAGCT
CCCTTTCTGTTGACTCAGGAACTTCGTGTGGATGAGGAGAGTGCTTGGAGATGAGCTTGTACCC
CCTTAACCCTAGAATAGTCCTGCTTCCTGGAACAAAACTTGAGGTCGTGTCCCAGAGGGAAACA
GGAAGCGAGAAACGGACCTGCCTACGCTTTTCATCTGAAACCGTGCCTGAAGCTGTTTGAGTGA
TTGTTTTAATGTTTCTTAAATTCCTTGTACCTTTGTAAAAAAAAAAATAATTAAGAAATAAAAG
TTAAAATAGATACAGAATCGTGCAATGTGCAATGGGAGAATATGACAATCATCCGTGGGTGGTA
ATTCCCACCTTTAATCCCAGCGCTTGGAAGGCTGAGGCAGGGGGATTGAGAATTTCAGACCAGC
CTGGGCAAAGAGTCTGAGACCCTGCCTCAACCAAAATAATAATAAAACACCAGACTCGATATTG
CAA

hide sequence

RefSeq Acc Id:

XM_039109864 ⟹ XP_038965792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,825,630 - 60,859,539 (-)	NCBI

RefSeq Acc Id:

XR_005504437

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,825,630 - 60,855,734 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012101	(Get FASTA)	NCBI Sequence Viewer
	XP_006238120	(Get FASTA)	NCBI Sequence Viewer
	XP_017448853	(Get FASTA)	NCBI Sequence Viewer
	XP_038965792	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79209	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012101 ⟸ NM_001012101

- UniProtKB:

A0A0G2QC56 (UniProtKB/TrEMBL), Q6AY36 (UniProtKB/TrEMBL), A6IJC5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWNGNSKLRPSPPLLKPNQMSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNP
HFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDIKWNPFDDFEIASCSEDATIKI
WNIPKQLLTRNLTTYRKELMGHARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVISGPV
RTINCHQDVILSMSFNTNGSLLATTCKDRKIRIVDPRLGIVLQEASYKGHRANKVLFLGNLKKL
LSTGTSRWNNRQMALWDQDNLSVPLTEEDLDGSSGVLFPFFDSDTSMLYIVGKGDGNIRYYEVS
TEKPHLTYLTEYRSYNPQKGIGIMPKRGLDVSSCEIFRFYKLITTKSLIEPVSMIVPRRSESYQ
EDIYPPTAAAQPSLTAHEWLSGMNRGPIMMSLRPGSELLDPQALPPERLLSNSVVQVSPQPLEP
VKQPAEDGDQAPFSLLEEKVTKWTTEHQLEEKSWLTNGFDIFECPPPKTENELLQMFYRQQEEI
RRLRELLIQREVQTKQLELEIKNLRMVLGQF

hide sequence

RefSeq Acc Id:	XP_006238120 ⟸ XM_006238058
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY36 (UniProtKB/TrEMBL), F1LSP7 (UniProtKB/TrEMBL), A6IJC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIP LHQTGKLDPHYPKVCGHRGNVLDIKWNPFDDFEIASCSEDATIKIWNIPKQLLTRNLTTYRKEL MGHARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVISGPVRTINCHQDVILSMSFNTNG SLLATTCKDRKIRIVDPRLGIVLQEASYKGHRANKVLFLGNLKKLLSTGTSRWNNRQMALWDQD NLSVPLTEEDLDGSSGVLFPFFDSDTSMLYIVGKGDGNIRYYEVSTEKPHLTYLTEYRSYNPQK GIGIMPKRGLDVSSCEIFRFYKLITTKSLIEPVSMIVPRRSESYQEDIYPPTAAAQPSLTAHEW LSGMNRGPIMMSLRPGSELLDPQALPPERLLSNSVVQVSPQPLEPVKQPAEDGDQAPFSLLEEK VTKWTTEHQLEEKSWLTNGFDIFECPPPKTENELLQMFYRQQEEIRRLRELLIQREVQTKQLEL EIKNLRMVLGQF hide sequence

RefSeq Acc Id:	XP_017448853 ⟸ XM_017593364
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2QC56 (UniProtKB/TrEMBL), A6IJC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWNGNSKLRPSPPLLKPNQMSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNP HFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDIKWNPFDDFEIASCSEDATIKI WNIPKQLLTRNLTTYRKELMGHARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVISGPV RTINCHQDVILSMSFNTNGSLLATTCKDRKIRIVDPRLGIVLQEASYKGHRANKVLFLGNLKKL LSTGTSRWNNRQMALWDQDNLSVPLTEEDLDGSSGVLFPFFDSDTSMLYIVGKGDGNIRYYEVS TEKPHLTYLTEYRSYNPQKGIGIMPKRGLDVSSCEIFRFYKLITTKSLIEPVSMIVPRRSESYQ EDIYPPTAAAQPSLTAHEWLSGMNRGPIMMSLRPGSELLDPQALPPERLLSNSVVQVSPQPLEP VKQPAEDGDQAPFSLLEEKVTKWTTEHQLEEKSWLTNGFDIFECPPPKTENELLQMFYRQQEEI RRLRELLIQREVQTKQLELEIKNLRMVLGQF hide sequence

RefSeq Acc Id:

ENSRNOP00000011787 ⟸ ENSRNOT00000011787

RefSeq Acc Id:

ENSRNOP00000072816 ⟸ ENSRNOT00000089789

RefSeq Acc Id:	XP_038965792 ⟸ XM_039109864
- Peptide Label:	isoform X2
- UniProtKB:	F1LSP7 (UniProtKB/TrEMBL), Q6AY36 (UniProtKB/TrEMBL), A6IJC5 (UniProtKB/TrEMBL)

Protein Domains

DUF1899

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC56-F1-model_v2	AlphaFold	A0A0G2QC56	1-543	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309719	AgrOrtholog
BioCyc Gene	G2FUF-41402	BioCyc
Ensembl Genes	ENSRNOG00000008901	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000011787	ENTREZGENE
	ENSRNOP00000011787.7	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011787	ENTREZGENE
	ENSRNOT00000011787.8	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7131801	IMAGE-MGC_LOAD
InterPro	Coronin	UniProtKB/TrEMBL
	DUF1899	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:313235	UniProtKB/TrEMBL
MGC_CLONE	MGC:94271	IMAGE-MGC_LOAD
NCBI Gene	313235	ENTREZGENE
PANTHER	Coronin	UniProtKB/TrEMBL
	PTHR10856:SF2	UniProtKB/TrEMBL
Pfam	DUF1899	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
	WD40_4	UniProtKB/TrEMBL
PhenoGen	Coro2a	PhenoGen
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	DUF1899	UniProtKB/TrEMBL
	DUF1900	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0A0G2QC56	ENTREZGENE, UniProtKB/TrEMBL
	A6IJC5	ENTREZGENE, UniProtKB/TrEMBL
	F1LSP7	ENTREZGENE
	Q6AY36	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LSP7	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-20	Coro2a	coronin 2A	Coro2a	coronin, actin binding protein 2A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Coro2a	coronin, actin binding protein 2A	Coro2a_predicted	coronin, actin binding protein 2A (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Coro2a_predicted	coronin, actin binding protein 2A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar