Tbc1d2 (TBC1 domain family, member 2)

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Gene: Tbc1d2 (TBC1 domain family, member 2) Rattus norvegicus

Analyze

Symbol:

Tbc1d2

Name:

TBC1 domain family, member 2

RGD ID:

1306860

Description:

Predicted to enable GTPase activator activity and cadherin binding activity. Predicted to be located in several cellular components, including cytoplasmic vesicle; cytosol; and nucleoplasm. Orthologous to human TBC1D2 (TBC1 domain family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313234; TBC1 domain family member 2A

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D2 (TBC1 domain family member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tbc1d2 (TBC1 domain family, member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d2 (TBC1 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TBC1D2 (TBC1 domain family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tbc1d2 (TBC1 domain family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d2 (TBC1 domain family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,884,114 - 60,931,717 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,884,124 - 60,931,352 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,854,810 - 62,902,403 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,674,184 - 64,721,774 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,643,586 - 64,691,170 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,213,001 - 62,261,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,212,982 - 62,260,105 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,739,640 - 66,786,134 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	63,177,831 - 63,225,245 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	63,179,373 - 63,225,636 (-)	NCBI
Celera	5	59,445,593 - 59,492,880 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation Ii (ISO)

congenital disorder of glycosylation type II (ISO)

congenital myasthenic syndrome 14 (ISO)

COVID-19 (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

nephronophthisis (ISO)

Prostatic Neoplasms (ISO)

thoracic aortic aneurysm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

8-Br-cAMP (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

allethrin (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dibenzo[a,l]pyrene (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

ferric oxide (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glycidyl methacrylate (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (EXP,ISO)

methimazole (EXP)

methylisothiazolinone (ISO)

ozone (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

potassium chromate (ISO)

progesterone (ISO)

propanal (ISO)

pyrethrins (EXP)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

testosterone (ISO)

tetraphene (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cilium assembly (ISO)

Cellular Component

anchoring junction (IEA)

cell junction (ISO,ISS)

cytoplasmic vesicle (ISO,ISS)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

cadherin binding (ISO)

GTPase activator activity (IBA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17646400	PMID:20116244

Genomics

Comparative Map Data

Tbc1d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,884,114 - 60,931,717 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,884,124 - 60,931,352 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,854,810 - 62,902,403 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,674,184 - 64,721,774 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,643,586 - 64,691,170 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,213,001 - 62,261,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,212,982 - 62,260,105 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,739,640 - 66,786,134 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	63,177,831 - 63,225,245 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	63,179,373 - 63,225,636 (-)	NCBI
Celera	5	59,445,593 - 59,492,880 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

TBC1D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	98,198,998 - 98,255,649 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	98,199,011 - 98,255,649 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	100,961,280 - 101,017,931 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	100,001,139 - 100,057,736 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	98,040,875 - 98,097,470	NCBI
Celera	9	71,475,593 - 71,532,312 (-)	NCBI		Celera
Cytogenetic Map	9	q22.33	NCBI
HuRef	9	70,561,480 - 70,618,067 (-)	NCBI		HuRef
CHM1_1	9	101,107,711 - 101,164,358 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	110,370,941 - 110,427,596 (-)	NCBI		T2T-CHM13v2.0

Tbc1d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	46,604,390 - 46,650,396 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	46,604,390 - 46,650,209 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	46,604,390 - 46,650,340 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	46,604,390 - 46,650,209 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	46,617,262 - 46,663,071 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	46,625,490 - 46,671,299 (-)	NCBI		MGSCv36	mm8
Celera	4	46,615,770 - 46,658,351 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	25.04	NCBI

Tbc1d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	27,266,207 - 27,312,839 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	27,266,214 - 27,312,908 (+)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	41,202,779 - 41,261,725 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	69,288,262 - 69,345,672 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	97,409,114 - 97,466,818 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	97,409,114 - 97,466,818 (-)	Ensembl	panpan1.1		panPan2

TBC1D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	55,404,468 - 55,455,061 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	55,404,506 - 55,454,890 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	53,837,857 - 53,888,479 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	56,516,768 - 56,564,545 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	56,516,782 - 56,564,556 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	55,012,095 - 55,062,626 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	55,042,972 - 55,093,595 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	55,739,658 - 55,790,491 (-)	NCBI		UU_Cfam_GSD_1.0

Tbc1d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	170,326,045 - 170,370,592 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	6,875,085 - 6,918,082 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936524	6,873,625 - 6,918,171 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	240,002,169 - 240,049,827 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	240,001,598 - 240,049,927 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	268,172,347 - 268,218,228 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	41,160,921 - 41,221,547 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	41,161,695 - 41,222,815 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	38,198,423 - 38,260,388 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	2,630,669 - 2,678,453 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624825	2,631,087 - 2,678,309 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tbc1d2
235 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	416
Count of miRNA genes:	138
Interacting mature miRNAs:	168
Transcripts:	ENSRNOT00000011714, ENSRNOT00000064858
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat

Markers in Region

RH142067

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,884,137 - 60,884,334 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	62,213,025 - 62,213,221	NCBI	Rnor6.0
Rnor_5.0	5	66,739,664 - 66,739,860	UniSTS	Rnor5.0
RGSC_v3.4	5	63,177,845 - 63,178,041	UniSTS	RGSC3.4
Celera	5	59,445,607 - 59,445,803	UniSTS
RH 3.4 Map	5	392.4	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		5	5		5					3	2
Low	2	43	52	36	19	36	6	6	74	35	38	9	6
Below cutoff							2	5					2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000011714 ⟹ ENSRNOP00000011714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,884,124 - 60,931,336 (-)	Ensembl
Rnor_6.0 Ensembl	5	62,212,982 - 62,260,105 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000064858 ⟹ ENSRNOP00000059752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,884,124 - 60,931,352 (-)	Ensembl
Rnor_6.0 Ensembl	5	62,213,011 - 62,260,089 (-)	Ensembl

RefSeq Acc Id:

NM_001399163 ⟹ NP_001386092

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,884,114 - 60,931,446 (-)	NCBI

RefSeq Acc Id:

XM_017593361 ⟹ XP_017448850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,884,114 - 60,931,071 (-)	NCBI
Rnor_6.0	5	62,213,001 - 62,259,759 (-)	NCBI

Sequence:

show sequence

CTCTCCAGTGCCACCTTTGACTGTAAGGCGGACGCTGAGGAGGAGGGCACTTTTGAAATCAAGA
CTCCTAGCCGAGTTATTACCCTCAAGAACAAGAGGAGGCTGAGCTGGAGGAGTTCCTGTGCCCT
GTGAAAACGCCCCCTGGACTTGTGGGTACAGCAGCGGCTTTGCAGCCTGTCCCTGCCATGCCCT
CAGCCCTTCAGAACATCTCCCTGAAGCATCTGGGAACCGAGATACAGAACACCATGTACAACAT
CCGAGGCAACAAGCAGGCCCAAGCAACAGCCCATGGGCCACCCGTGGAAGAGTCGTCACAGAGT
GCAGAGCCTCAAAGAGGGGAGCAGCCCTTGATCTCTGATCCCAGCATTCCAGAAAAGGAGCCAG
AGGATCCTCCCAAGTCTGCACCCAGGTCCTGCGTGCCCTCGGGTCCCATGCAGAAACCCAAGCG
GCAAAGCAATACCTTTCCGTTTTTTTCCGACGGCCTGGCTCGGAGCCGCACAGCCCAGGAGAAG
GTGGTGGCTTTGGAACAGCAGGTGCTGATGCTCACCAAAGAGCTCAAGTCACAGAAGGAGCTGG
TGATAATCCTACACAAGGCCCTGGAGGCTGCCCAGCAAGAGAAGCGAGCCTCCAGTGCGTACCT
GGCAGCCACCGAGGACAGAGATCGGCTGGAGCTGGTCCGGCACAAGGTGCGGCAGATCGCAGAG
CTGAACCAGAGGGTGGAGGCTCTGGAGCAGGACCGTGAGCGCCTGGTGCACGAGGCTGGCCTGC
GGGAGCAGCAGGTGCAGGCGCTTCAGCAGCATGTGCAGCTGCTCATGGACAAGAACCAGGCCAA
GCAGCAGGTCATCTGCAAGCTCTCCCAGAAGCTCACGGAAGACCTTGCACAACCCCAGCCTGCT
GATGCTACCAATGGTGACTTCCTGAGCCAGCAGGAGAGGTTGGAGCATCTGAAGGATGACATGG
AAGCATATCGGACCCAGAACCGCTTCCTCAACTCTGAGATCCACCAGGTCACCAAGATCTGGAG
GAAGGTGGCCGAGAAGGAGAAAGCCCTGCTGACCAAGTGCGCCTACCTCCAAGCCAGGAACTGC
CAGGTAGAAAGCAAGTACCTGGCCGGACTTCGAAGGCTGCAGGAAGCGGCAGGGGCTGAGCCTG
GTGACTTCCCTGAGCTGCTGCAGCAGCTGGTCCAGGAGGCACTGCAGTGGGAAGCAGGAGAGGC
TTCCGACAGCGTGGGGCTGAGCCCTGTCAGCGAGTATGATGATTATGGCTTCCTGACAGTGCCA
GACTACGAGGTGGAAGACCTGAAACTACTAGCCAAGATCCAGGCCTTGGAAGTGCGCTCCCACC
ACCTGCTGGCCCTCGAGGCCGTGGAGAGGCCACTACGGGACCGCTGGGCTACTCTGACCGAGCT
CATGCCCTCAGCTGAACTCAAGCAGCTGCTACGGGCAGGTGTGCCCCGAGAGCACCGCCCACGG
GTCTGGAGGTGGCTGGTCCACCGCCGTGTCCAGCACCTGCACTCCTCAGGCTGCTACCAGGAGC
TTCTGGCCCGGGGCCGGGCATGTGAGCACCCTGCTGCTCGTCAGATCGAGCTGGACCTCAACAG
AACCTTCCCCACCAACAAGCACTTCACCTGCCCTACCTCCAGCTTCCCTGACAAGCTCCGCCGT
GTGCTCCTGGCCTTCTCCTGGCAGAACCCCACCATTGGCTACTGCCAAGGCTTGAACAGGCTGG
CAGCCATCGCCCTGTTGGTCCTAGAGGATGAGGAGAGTGCCTTCTGGTGCCTGGTGGCCATTGT
GGAGACCATACTGCCGGCTGAGTACTACAGCAAGACACTGACTGCATCCCAGGTGGACCAGCGG
GTGCTCCAGGACCTCCTCTCAGAGAAGCTGCCCCGACTGACTGCGCACCTGGGACAGCGCCATG
TAGACCTCTCTCTCATCACGTTCAACTGGTTCCTCGTGATCTTTGCCGACTCTCTCATCAGTGA
CATCCTCCTGCGAGTCTGGGATGCCTTCCTGTACGAAGGGACCAAGGTGGTGTTCCGATATGCT
CTGGCCATCTTCAAGTACAACGAGGAAGCGATCCTTCGACTCCAGGACAGCCTGGAGATCTACC
AGTACCTGCGCTTCTTCACCAAGACCATCTGCGACAGCCGGAAGCTCACAAGCATTGCCTTCAA
TGATATGAACCCCTTTCCCATGAAGCAACTGCGGCAGCTGCGGGCAGCCCACCGAGAGCGACTA
GAGGCTGAGCTTCGGGAGCTAGAACTGCTGAAGGCTGAGTACTTGGAGAGAAGGGCATCCAGGG
GCAGAGCAGTGCCTGAGGGCTGCGTCAGCGAGGACGAAGGAGAAGGCGACAGCTGACCCACCAC
CCTGTTCCTCAAAGCCTTGCTTACCACTGCTGGCAGGAAGACAGAATTCAGTAATGGGCCGGAG
GTGTGTGTGACCCCGGACAAGGCCTTGTCCTCTCCCAGCATTAGCCTCTCGGGCATGCCAGCCT
GTATCACAGCCCCACAGAGCACTTTAACACACAGGAAGGAGGCAGGGATACACTCTGGGTCACC
CGGAACCGTCTCCGAGGCACCGCCATCTCAGTTTGGCTTGGATTTCATCTTCTGACCAGGCCTC
CTGGGACTCTTCCTGACCCTGGACTCTATGCAGTTGAGCGTGGCCCCGATCTTCGGATCCTCCT
GTCAGAGCCATGTCGACATACAGCAACGTCCCTGTGGCTGATGGCTCTCCCCCTTGAGGACAAA
AGCAGTCTCATTACCAGTGCTCCTGGGCACAAGGTGTCGGGAATGGCACCCTCTGGCTCAAGGT
CTTGGCCACCATTCCTGTGGCACCCCAAGTTCATCTGTCTTTCCAGGCAGTAGCCCCTCTGAGC
TGCTACCTAGATCTGTGTTGAGACCACCCTGCTTATGGAGACTATTATCTGCAGTCTCATGCCT
AAAACTTGCCTTCTGTTTACAGCCCACAGGGGACATCCCGGGGGAACCCCTGCCTGCCACCCTG
AGGTACTTGATATGGTTTGGACAGTGTGCCCCCGTCATGTGGGGCCAATGAGGTAGGCTTGGGA
GGGCGAGCATGGCAGCAGCGCACCTGGCTCAGCAGAGAGAGTTGGTAAGCAGATGGAGGGGACA
TGCTAGGGGGAGACCAGCTCTCCCAGAAACCATCAAAAAGCCAAAAACAGGTCAAACTGTGGGC
ACGGGCTGCTGGATAAACAGTATCCTCTCTACCACTCCCCTCACCAAGCCAAGGCCCCCACCTC
TCCTTTTCCTCGCCTCCCTAGAAGAGAATTCTGCCTAAGCACTTGTGCTCCTCCTTGGAGGACC
AGAGCAGCTTTCTTACCAAGCTGCACCTTGTTCCAGCAGTGCTGGGCCTTGTGCTCTGTGCTCT
TCCTTGGAGGACCAGAGCAGCTTTCTTACCAAGCTGCACCTTGTTCCAGCAGTGCTGGGCCTTG
TGCTCTGTGGCTCTTGGAGCTTGGAGCCGAGTTCTACTAGCCCTGGGGGGTGAGCATTCTGGGA
CTAATTGCTTCCTCCCGCCCAGACAGAGCTCCAGTGTCACCCAGAGGGGAGGGCGGGTCTGGCC
ATGACTGCCTGTGGGGTGCACCCATAGTATCAACACTAGGAAGAGAAAAGGAGTCAGGTGTGGG
GTACACACTTCTGATCCCAGCAGTTCCAACAGTGGATTACACAGCCAAACAGTGTCTCCAAAAC
CAAATAAATAAGAGAAAAACGA

hide sequence

RefSeq Acc Id:

XM_039109861 ⟹ XP_038965789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,896,066 - 60,931,717 (-)	NCBI

RefSeq Acc Id:

XM_039109862 ⟹ XP_038965790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,884,114 - 60,903,757 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386092	(Get FASTA)	NCBI Sequence Viewer
	XP_017448850	(Get FASTA)	NCBI Sequence Viewer
	XP_038965789	(Get FASTA)	NCBI Sequence Viewer
	XP_038965790	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68982	(Get FASTA)	NCBI Sequence Viewer
	B5DFA1	(Get FASTA)	NCBI Sequence Viewer
	EDL98848	(Get FASTA)	NCBI Sequence Viewer
	EDL98849	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_017448850 ⟸ XM_017593361
- Peptide Label:	isoform X2
- UniProtKB:	A6IJC8 (UniProtKB/TrEMBL), D3ZSN8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSALQNISLKHLGTEIQNTMYNIRGNKQAQATAHGPPVEESSQSAEPQRGEQPLISDPSIPEK EPEDPPKSAPRSCVPSGPMQKPKRQSNTFPFFSDGLARSRTAQEKVVALEQQVLMLTKELKSQK ELVIILHKALEAAQQEKRASSAYLAATEDRDRLELVRHKVRQIAELNQRVEALEQDRERLVHEA GLREQQVQALQQHVQLLMDKNQAKQQVICKLSQKLTEDLAQPQPADATNGDFLSQQERLEHLKD DMEAYRTQNRFLNSEIHQVTKIWRKVAEKEKALLTKCAYLQARNCQVESKYLAGLRRLQEAAGA EPGDFPELLQQLVQEALQWEAGEASDSVGLSPVSEYDDYGFLTVPDYEVEDLKLLAKIQALEVR SHHLLALEAVERPLRDRWATLTELMPSAELKQLLRAGVPREHRPRVWRWLVHRRVQHLHSSGCY QELLARGRACEHPAARQIELDLNRTFPTNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLN RLAAIALLVLEDEESAFWCLVAIVETILPAEYYSKTLTASQVDQRVLQDLLSEKLPRLTAHLGQ RHVDLSLITFNWFLVIFADSLISDILLRVWDAFLYEGTKVVFRYALAIFKYNEEAILRLQDSLE IYQYLRFFTKTICDSRKLTSIAFNDMNPFPMKQLRQLRAAHRERLEAELRELELLKAEYLERRA SRGRAVPEGCVSEDEGEGDS hide sequence

RefSeq Acc Id:

ENSRNOP00000011714 ⟸ ENSRNOT00000011714

RefSeq Acc Id:

ENSRNOP00000059752 ⟸ ENSRNOT00000064858

RefSeq Acc Id:	XP_038965790 ⟸ XM_039109862
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038965789 ⟸ XM_039109861
- Peptide Label:	isoform X3

RefSeq Acc Id:	NP_001386092 ⟸ NM_001399163
- UniProtKB:	B5DFA1 (UniProtKB/Swiss-Prot)

Protein Domains

PH Rab-GAP TBC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFA1-F1-model_v2	AlphaFold	B5DFA1	1-924	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306860	AgrOrtholog
BioCyc Gene	G2FUF-41397	BioCyc
Ensembl Genes	ENSRNOG00000023348	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000011714	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000059752	ENTREZGENE
	ENSRNOP00000059752.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011714	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000064858	ENTREZGENE
	ENSRNOT00000064858.4	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	Rab-GTPase-TBC_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:313234	UniProtKB/TrEMBL
NCBI Gene	313234	ENTREZGENE
PANTHER	GTPASE ACTIVATING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/Swiss-Prot
	RabGAP-TBC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tbc1d2	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot
	TBC_RABGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SM00233	UniProtKB/Swiss-Prot
	TBC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF47923	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6IJC8	ENTREZGENE, UniProtKB/TrEMBL
	B5DFA1	ENTREZGENE
	D3ZSN8	ENTREZGENE, UniProtKB/TrEMBL
	TBD2A_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tbc1d2	TBC1 domain family, member 2	Tbc1d2_predicted	TBC1 domain family, member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tbc1d2_predicted	TBC1 domain family, member 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD