Cdkn2a (cyclin-dependent kinase inhibitor 2A) - Rat Genome Database

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Gene: Cdkn2a (cyclin-dependent kinase inhibitor 2A) Rattus norvegicus
Symbol: Cdkn2a
Name: cyclin-dependent kinase inhibitor 2A
RGD ID: 2323
Description: Predicted to enable several functions, including MDM2/MDM4 family protein binding activity; NF-kappaB binding activity; and enzyme inhibitor activity. Involved in several processes, including cellular response to glucose stimulus; negative regulation of hepatocyte proliferation; and nervous system development. Located in cytoplasm and nucleus. Used to study carcinoma (multiple); endometrial cancer; pre-malignant neoplasm; rhabdomyosarcoma; and sarcomatoid mesothelioma. Biomarker of hepatocellular carcinoma; hypertension; obesity; and osteoarthritis. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); hematologic cancer (multiple); high grade glioma (multiple); melanoma (multiple); and pancreatic cancer (multiple). Orthologous to human CDKN2A (cyclin dependent kinase inhibitor 2A); PARTICIPATES IN altered G1/S transition pathway; G1/S transition pathway; pancreatic cancer pathway; INTERACTS WITH (+)-pilocarpine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
Also known as: alternative reading frame; Arf; CDK4I; cell cycle inhibitor; cell cycle regulator; Cyclin dependent kinase inhibitor 2A (p16 inhibits CDK4); Cyclin dependent kinase inhibitor 2A (p16, inhibits CDK4); cyclin-dependent kinase 4 inhibitor A; cyclin-dependent kinase inhibitor 2a p16Ink4a; cyclin-dependent kinase inhibitor 2a p19Arf; cyclin-dependent kinase inhibitor 2A, isoform 1; cyclin-dependent kinase inhibitor 2A, isoform 2; INK4A; MTS1; p16; p16-INK4; p16-INK4a; p16Cdkn2a; p19ARF
RGD Orthologs
Alliance Genes
More Info more info ...
Allele / Splice: Cdkn2a_v1   Cdkn2a_v2  
Is Marker For: Strains:   F344/NRrrc  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.25103,984,949 - 103,992,143 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5103,984,949 - 104,003,149 (-)Ensembl
Rnor_6.05107,823,323 - 107,832,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5107,823,330 - 107,841,175 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05111,793,603 - 111,801,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05111,556,970 - 111,557,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45108,908,749 - 108,916,380 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15108,913,974 - 108,921,606 (-)NCBI
Celera5102,700,552 - 102,707,724 (-)NCBICelera
Cytogenetic Map5q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations     Click to see Annotation Detail View
acute lymphoblastic leukemia  (ISO)
acute myeloid leukemia  (ISO)
adenocarcinoma  (ISO)
Adrenal Gland Neoplasms  (ISO)
adrenocortical carcinoma  (ISO)
adult hepatocellular carcinoma  (ISO)
B-lymphoblastic leukemia/lymphoma  (ISO)
bone disease  (ISO)
Brain Neoplasms  (ISO)
Brain Stem Neoplasms  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
Carcinogenesis  (ISO)
cervix uteri carcinoma in situ  (ISO)
cholangiocarcinoma  (ISO)
Chromosome Deletion  (ISO)
chronic myeloid leukemia  (ISO)
Colonic Neoplasms  (IEP)
Colorectal Neoplasms  (ISO)
cutaneous T cell lymphoma  (ISO)
diffuse large B-cell lymphoma  (ISO)
disease of cellular proliferation  (ISO)
dysplastic nevus syndrome  (ISO)
endometrial cancer  (IAGP)
Endometrial Neoplasms  (ISO)
esophageal carcinoma  (ISO)
Esophageal Neoplasms  (IEP,ISO)
esophagus adenocarcinoma  (ISO)
esophagus squamous cell carcinoma  (ISO)
Experimental Arthritis  (ISO)
Experimental Leukemia  (ISO)
familial melanoma  (ISO)
Fluoride Poisoning  (ISO)
gastric adenocarcinoma  (ISO)
genetic disease  (ISO)
Genetic Translocation  (ISO)
Germ Cell and Embryonal Neoplasms  (ISO)
germinoma  (ISO)
glaucoma  (ISO)
glioblastoma  (ISO)
granulosa cell tumor  (ISO)
head and neck squamous cell carcinoma  (ISO)
hepatocellular carcinoma  (IDA,IEP,ISO)
Hereditary Neoplastic Syndromes  (ISO)
high grade glioma  (ISO)
Hyperplasia  (IEP)
hypertension  (IEP)
in situ carcinoma  (ISO)
invasive ductal carcinoma  (ISO)
Kidney Neoplasms  (ISO)
leiomyosarcoma  (ISO)
leukemia  (ISO)
Liver Neoplasms  (ISO)
lung adenocarcinoma  (ISO)
Lung Neoplasms  (IDA,ISO)
lung non-small cell carcinoma  (ISO)
lung squamous cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
lymphoma  (ISO)
malignant mesothelioma  (ISO)
Mammary Neoplasms, Experimental  (IEP,ISO)
melanoma  (ISO)
melanoma and neural system tumor syndrome  (ISO)
Melanoma-Pancreatic Cancer Syndrome  (ISO)
Mesothelioma  (IAGP,ISO)
Micronuclei, Chromosome-Defective  (ISO)
Mouth Neoplasms  (ISO)
multiple myeloma  (ISO)
myelodysplastic syndrome  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
nephroblastoma  (ISO)
Nerve Sheath Neoplasms  (ISO)
neurilemmoma  (ISO)
neuroblastoma  (ISO)
obesity  (IEP)
osteoarthritis  (IEP)
osteosarcoma  (ISO)
Ovarian Neoplasms  (ISO)
pancreatic adenocarcinoma  (ISO)
pancreatic cancer  (ISO)
pancreatic carcinoma  (ISO)
pancreatic ductal carcinoma  (ISO)
papillary renal cell carcinoma  (ISO)
papillomavirus infectious disease  (ISO)
peripheral nervous system disease  (ISO)
persistent hyperplastic primary vitreous  (ISO)
plasmacytoma  (ISO)
Poisoning  (ISO)
pre-malignant neoplasm  (IDA,ISO)
Premature Aging  (ISO)
prostate adenocarcinoma  (ISO)
prostate cancer  (ISO)
Prostatic Neoplasms  (ISO)
renal cell carcinoma  (IAGP,ISO)
retinoblastoma  (ISO)
rhabdomyosarcoma  (IDA)
sarcomatoid mesothelioma  (IAGP)
schizophrenia  (ISO)
Sezary's disease  (ISO)
skin melanoma  (ISO)
Sporadic Papillary Renal Cell Carcinoma  (ISO)
squamous cell carcinoma  (ISO)
Stomach Neoplasms  (ISO)
T-cell acute lymphoblastic leukemia  (ISO)
T-cell lymphoblastic leukemia/lymphoma  (ISO)
thymoma  (ISO)
Tongue Neoplasms  (IAGP,IEP)
transient cerebral ischemia  (ISO)
transitional cell carcinoma  (ISO)
Trisomy  (ISO)
urinary bladder cancer  (ISO)
Urogenital Neoplasms  (ISO)
uterine carcinosarcoma  (ISO)
Uterine Cervical Neoplasms  (ISO)
Vulvar Lichen Sclerosus  (ISO)
Vulvar Neoplasms  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
(Z)-3-butylidenephthalide  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-acetamidofluorene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-phenylbutyric acid  (ISO)
4-vinylcyclohexene dioxide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (ISO)
agomelatine  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-D-galactose  (EXP)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
asbestos  (ISO)
belinostat  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
beryllium atom  (EXP)
beryllium dihydride  (EXP)
beryllium sulfate  (ISO)
beryllium(0)  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
BMS-754807  (ISO)
busulfan  (ISO)
Butylbenzyl phthalate  (ISO)
butyric acid  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium dichloride  (EXP)
cannabidiol  (EXP,ISO)
capecitabine  (ISO)
capsaicin  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
casticin  (ISO)
chloramphenicol  (ISO)
chloroethene  (ISO)
chromium atom  (ISO)
chromium(6+)  (EXP,ISO)
chymostatin  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (EXP)
corticosterone  (EXP)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
D-glucose  (ISO)
daunorubicin  (ISO)
dehydroepiandrosterone  (EXP)
Deoxycorticosterone acetate  (EXP)
Diacetoxyscirpenol  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dichromic acid  (ISO)
dichromium trioxide  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (EXP,ISO)
dioscin  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
entinostat  (EXP)
ethanol  (ISO)
etoposide  (EXP,ISO)
fenbendazole  (EXP)
ferric oxide  (ISO)
fluoxetine  (ISO)
folic acid  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
galactose  (EXP)
gamma-tocopherol  (ISO)
glucaric acid  (ISO)
glucose  (ISO)
glycidol  (EXP)
glycine betaine  (EXP)
glyphosate  (ISO)
GW 3965  (ISO)
harmine  (ISO)
hexachlorobenzene  (EXP)
hydralazine  (EXP,ISO)
hydrochlorothiazide  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxyurea  (ISO)
imidacloprid  (ISO)
irbesartan  (ISO)
irinotecan  (ISO)
isocyanates  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (EXP)
lead diacetate  (ISO)
lidocaine  (ISO)
linalool  (ISO)
lithium chloride  (ISO)
losartan  (ISO)
LY294002  (ISO)
maneb  (EXP)
masoprocol  (ISO)
Mecamylamine  (ISO)
melatonin  (EXP)
menadione  (ISO)
menaquinone  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methoxyacetic acid  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (EXP,ISO)
methylseleninic acid  (ISO)
microcystin RR  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
monoethyl phthalate  (ISO)
monosodium L-glutamate  (EXP,ISO)
myo-inositol hexakisphosphate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
nickel subsulfide  (EXP)
nicotinamide  (ISO)
nicotine  (ISO)
nitrogen dioxide  (EXP)
O-methyleugenol  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
piroxicam  (EXP)
potassium dichromate  (ISO)
prednisone  (ISO)
proanthocyanidin  (EXP)
procainamide  (ISO)
promethazine  (EXP)
quercetin  (EXP,ISO)
quinoline  (ISO)
radon atom  (ISO)
radon(0)  (ISO)
reserpine  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
salubrinal  (EXP)
SB 203580  (ISO)
SB 431542  (ISO)
serpentine asbestos  (EXP)
silver(1+) nitrate  (ISO)
simvastatin  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
spironolactone  (EXP)
stavudine  (ISO)
streptozocin  (ISO)
sulforaphane  (ISO)
sulfur dioxide  (EXP)
sulindac  (EXP)
T-2 toxin  (EXP)
terephthalic acid  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thioridazine  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vinorelbine  (ISO)
wogonin  (ISO)
zearalenone  (ISO)
zidovudine  (ISO)
zinc pyrithione  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
aging  (IEP,ISO)
amyloid fibril formation  (ISO)
apoptotic mitochondrial changes  (ISO)
apoptotic process  (IEA)
autophagy of mitochondrion  (ISO)
cell aging  (ISO)
cellular response to glucose stimulus  (IEP)
cellular response to hydrogen peroxide  (ISO)
cellular senescence  (ISO)
cerebellum development  (IEP)
epidermis development  (ISO)
glucose homeostasis  (ISO)
mitochondrial depolarization  (ISO)
negative regulation of B cell proliferation  (ISO)
negative regulation of cell cycle  (ISO)
negative regulation of cell growth  (ISO)
negative regulation of cell population proliferation  (IEA,ISO)
negative regulation of cell-matrix adhesion  (ISO)
negative regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
negative regulation of hepatocyte proliferation  (IMP)
negative regulation of immature T cell proliferation in thymus  (ISO)
negative regulation of mammary gland epithelial cell proliferation  (ISO)
negative regulation of NF-kappaB transcription factor activity  (ISO)
negative regulation of phosphorylation  (ISO)
negative regulation of protein binding  (ISO)
negative regulation of protein kinase activity  (ISO)
negative regulation of protein neddylation  (ISO)
negative regulation of proteolysis involved in cellular protein catabolic process  (ISO)
negative regulation of transcription, DNA-templated  (ISO)
negative regulation of ubiquitin protein ligase activity  (ISO)
negative regulation of ubiquitin-dependent protein catabolic process  (ISO)
negative regulation of ubiquitin-protein transferase activity  (ISO)
neurogenesis  (IEP)
positive regulation of apoptotic process  (IMP,ISO,ISS)
positive regulation of apoptotic process involved in mammary gland involution  (ISO)
positive regulation of DNA damage response, signal transduction by p53 class mediator  (ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of macrophage apoptotic process  (ISO)
positive regulation of protein localization to nucleus  (ISO)
positive regulation of protein sumoylation  (ISO)
positive regulation of signal transduction by p53 class mediator  (ISO)
positive regulation of smooth muscle cell apoptotic process  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
protein destabilization  (ISO)
protein K63-linked ubiquitination  (ISO,ISS)
protein polyubiquitination  (ISO,ISS)
protein stabilization  (ISO)
Ras protein signal transduction  (ISO)
regulation of apoptotic DNA fragmentation  (ISO)
regulation of cell cycle  (IEA,ISO)
regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
regulation of DNA-binding transcription factor activity  (ISO)
regulation of G1/S transition of mitotic cell cycle  (ISO)
regulation of G2/M transition of mitotic cell cycle  (ISO)
regulation of gene expression  (ISO)
regulation of nucleocytoplasmic transport  (ISO)
regulation of protein export from nucleus  (ISO)
regulation of protein stability  (ISO)
regulation of protein targeting to mitochondrion  (ISO)
replicative senescence  (ISO)
response to caloric restriction  (IEP)
response to fatty acid  (IEP)
response to organic cyclic compound  (IDA)
response to organic substance  (IEP)
response to organonitrogen compound  (IDA)
response to salt stress  (IEP)
response to xenobiotic stimulus  (IDA,IEP)
rRNA processing  (IEA)
rRNA transcription  (ISO)
somatic stem cell division  (ISO)
somatic stem cell population maintenance  (ISO)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References - curated
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Additional References at PubMed
PMID:7603984   PMID:7651726   PMID:7739547   PMID:8259215   PMID:9054499   PMID:9529249   PMID:9878046   PMID:10205165   PMID:10208428   PMID:10353611   PMID:10360174   PMID:11438662  
PMID:11551927   PMID:11718560   PMID:11748239   PMID:11800646   PMID:12082630   PMID:12130539   PMID:12154087   PMID:12417039   PMID:12630860   PMID:14720514   PMID:14966292   PMID:15105443  
PMID:15144691   PMID:15149599   PMID:15201967   PMID:15355988   PMID:15485902   PMID:15567177   PMID:15582998   PMID:15964995   PMID:15989966   PMID:16173922   PMID:16199867   PMID:16243918  
PMID:16760664   PMID:16901784   PMID:17110379   PMID:17310983   PMID:17569660   PMID:18019407   PMID:18305112   PMID:18396777   PMID:18560357   PMID:18625840   PMID:18656278   PMID:18704299  
PMID:18809582   PMID:18818403   PMID:18957199   PMID:19057511   PMID:19255859   PMID:19642983   PMID:20381282   PMID:20808772   PMID:20934317   PMID:21911473   PMID:22094112   PMID:22320862  
PMID:22681889   PMID:22729085   PMID:22873822   PMID:22952318   PMID:22984612   PMID:23277542   PMID:24616519   PMID:25217637   PMID:25865695   PMID:27323397   PMID:29166374   PMID:31687322  
PMID:32080953   PMID:33010296   PMID:34334511  


Candidate Gene Status
Cdkn2a is a candidate Gene for QTL Emca11
Comparative Map Data
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.25103,984,949 - 103,992,143 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5103,984,949 - 104,003,149 (-)Ensembl
Rnor_6.05107,823,323 - 107,832,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5107,823,330 - 107,841,175 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05111,793,603 - 111,801,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05111,556,970 - 111,557,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45108,908,749 - 108,916,380 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15108,913,974 - 108,921,606 (-)NCBI
Celera5102,700,552 - 102,707,724 (-)NCBICelera
Cytogenetic Map5q32NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl921,967,752 - 21,995,301 (-)EnsemblGRCh38hg38GRCh38
GRCh38921,967,752 - 21,995,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37921,967,751 - 21,995,323 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,957,751 - 21,984,490 (-)NCBINCBI36hg18NCBI36
Build 34921,957,751 - 21,984,490NCBI
Celera921,906,103 - 21,932,858 (-)NCBI
Cytogenetic Map9p21.3NCBI
HuRef921,930,969 - 21,957,759 (-)NCBIHuRef
CHM1_1921,967,646 - 21,994,319 (-)NCBICHM1_1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm39489,192,710 - 89,212,856 (-)NCBIGRCm39mm39
GRCm39 Ensembl489,192,708 - 89,212,890 (-)Ensembl
GRCm38489,274,473 - 89,294,619 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl489,274,471 - 89,294,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv37488,920,377 - 88,940,523 (-)NCBIGRCm37mm9NCBIm37
MGSCv36488,745,868 - 88,765,796 (-)NCBImm8
Celera487,760,902 - 87,780,610 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.15NCBI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.1922,420,748 - 22,447,243 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0921,803,862 - 21,831,322 (-)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.11141,223,316 - 41,226,056 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1141,223,315 - 41,264,379 (-)EnsemblCanFam3.1canFam3CanFam3.1
UMICH_Zoey_3.11140,835,885 - 40,865,099 (-)NCBI
UU_Cfam_GSD_1.01141,337,054 - 41,366,301 (-)NCBI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1200,774,496 - 200,798,854 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11200,774,496 - 200,799,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,989,828 - 223,992,651 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25103,991,975 - 103,992,098 (+)MAPPERmRatBN7.2
Rnor_6.05107,832,238 - 107,832,360NCBIRnor6.0
Rnor_5.05111,801,053 - 111,801,175UniSTSRnor5.0
RGSC_v3.45108,916,213 - 108,916,335UniSTSRGSC3.4
Celera5102,707,557 - 102,707,679UniSTS
Cytogenetic Map5q32UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25103,991,982 - 103,992,130 (+)MAPPERmRatBN7.2
Rnor_6.05107,832,245 - 107,832,392NCBIRnor6.0
Rnor_5.05111,801,060 - 111,801,207UniSTSRnor5.0
RGSC_v3.45108,916,220 - 108,916,367UniSTSRGSC3.4
Celera5102,707,564 - 102,707,711UniSTS
Cytogenetic Map5q32UniSTS

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)599016066119085810Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)599753548113061097Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat

Related Rat Strains
The following Strains have been annotated to Cdkn2a

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:60
Interacting mature miRNAs:61
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
Low 2 16 14 22 5
Below cutoff 19 14 14 5 14 2 3 7 5 13 6 2


Nucleotide Sequences
RefSeq Transcripts NM_031550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB081658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY145882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY679727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY679728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ336094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ336095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ336096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ350894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ350895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ350896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L81167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079251   ⟹   ENSRNOP00000072063
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5103,984,949 - 104,003,149 (-)Ensembl
Rnor_6.0 Ensembl5107,823,374 - 107,841,175 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084293   ⟹   ENSRNOP00000073038
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5103,986,666 - 103,992,143 (-)Ensembl
Rnor_6.0 Ensembl5107,823,330 - 107,832,405 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103638   ⟹   ENSRNOP00000087870
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5103,984,956 - 103,992,143 (-)Ensembl
RefSeq Acc Id: NM_031550   ⟹   NP_113738
Rat AssemblyChrPosition (strand)Source
mRatBN7.25103,984,949 - 103,992,143 (-)NCBI
Rnor_6.05107,823,323 - 107,832,405 (-)NCBI
Rnor_5.05111,556,970 - 111,557,193 (-)NCBI
Rnor_5.05111,793,603 - 111,801,220 (-)NCBI
RGSC_v3.45108,908,749 - 108,916,380 (-)RGD
Celera5102,700,552 - 102,707,724 (-)RGD