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Gene: Col15a1 (collagen type XV alpha 1 chain) Rattus norvegicus
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Symbol: Col15a1
Name: collagen type XV alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to the basement membrane and extracellular space. Orthologous to human COL15A1 (collagen type XV alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(XV) chain; collagen, type XV, alpha 1; LOC298069; procollagen, type XV
Orthologs:
Homo sapiens (human) : COL15A1 (collagen type XV alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col15a1 (collagen, type XV, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col15a1 (collagen type XV alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL15A1 (collagen type XV alpha 1 chain)
Canis lupus familiaris (dog) : COL15A1 (collagen type XV alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col15a1 (collagen type XV alpha 1 chain)
Sus scrofa (pig) : COL15A1 (collagen type XV alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0562,840,360 - 62,950,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0568,988,935 - 69,056,133 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4563,825,907 - 63,930,633 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1563,743,680 - 63,931,859 (+)NCBI
Celera560,056,428 - 60,161,980 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col15a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310820
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.