Ptbp3 (polypyrimidine tract binding protein 3) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ptbp3 (polypyrimidine tract binding protein 3) Rattus norvegicus
Analyze
Symbol: Ptbp3
Name: polypyrimidine tract binding protein 3
RGD ID: 621671
Description: Predicted to enable mRNA binding activity. Involved in regulation of cell differentiation. Predicted to be active in nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3); INTERACTS WITH 1,2-dimethylhydrazine; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: polypyrimidine tract-binding protein 3; regulator of differentiation (in S. pombe) 1; regulator of differentiation 1; Rod1; ROD1 regulator of differentiation 1; ROD1 regulator of differentiation 1 (S. pombe)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2574,313,367 - 74,399,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,315,101 - 74,399,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx576,218,248 - 76,304,318 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,039,883 - 78,125,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,012,048 - 78,098,119 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,670,074 - 76,756,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,673,990 - 76,756,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,807,961 - 80,893,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,551,329 - 77,635,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,556,441 - 77,640,235 (-)NCBI
Celera573,136,368 - 73,217,909 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
alpha-phellandrene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hypochlorous acid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rimonabant  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
thioacetamide  (EXP)
troglitazone  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Isolation of a mammalian homologue of a fission yeast differentiation regulator. Yamamoto H, etal., Mol Cell Biol 1999 May;19(5):3829-41.
Additional References at PubMed
PMID:18335065   PMID:22658674   PMID:22681889   PMID:23636947  


Genomics

Comparative Map Data
Ptbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2574,313,367 - 74,399,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,315,101 - 74,399,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx576,218,248 - 76,304,318 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,039,883 - 78,125,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,012,048 - 78,098,119 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,670,074 - 76,756,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,673,990 - 76,756,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,807,961 - 80,893,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,551,329 - 77,635,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,556,441 - 77,640,235 (-)NCBI
Celera573,136,368 - 73,217,909 (-)NCBICelera
Cytogenetic Map5q24NCBI
PTBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389112,217,715 - 112,379,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9112,217,716 - 112,333,664 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,979,995 - 115,095,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,020,536 - 114,135,733 (-)NCBINCBI36Build 36hg18NCBI36
Build 349112,064,495 - 112,175,460NCBI
Celera985,479,714 - 85,594,900 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef984,578,801 - 84,694,587 (-)NCBIHuRef
CHM1_19115,126,396 - 115,242,542 (-)NCBICHM1_1
T2T-CHM13v2.09124,388,866 - 124,504,825 (-)NCBIT2T-CHM13v2.0
Ptbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,471,868 - 59,549,288 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,471,868 - 59,549,364 (-)EnsemblGRCm39 Ensembl
GRCm38459,471,868 - 59,549,378 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,471,868 - 59,549,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv37459,484,740 - 59,562,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,569,120 - 59,643,340 (-)NCBIMGSCv36mm8
Celera459,388,969 - 59,466,480 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.57NCBI
Ptbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,000,072 - 15,101,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,002,780 - 15,101,588 (+)NCBIChiLan1.0ChiLan1.0
PTBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1927,056,557 - 27,216,931 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0983,348,909 - 83,508,736 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19111,506,100 - 111,664,928 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9111,511,371 - 111,563,893 (-)Ensemblpanpan1.1panPan2
PTBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,727,670 - 66,847,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,732,583 - 66,847,303 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,136,112 - 65,291,068 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,861,465 - 68,012,011 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,861,472 - 67,980,571 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,375,784 - 66,528,469 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,399,432 - 66,551,921 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01167,143,518 - 67,296,220 (-)NCBIUU_Cfam_GSD_1.0
Ptbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,076,874 - 182,174,968 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,091,494 - 1,186,440 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365591,091,575 - 1,186,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,986,564 - 253,093,063 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,986,716 - 253,093,059 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,772,669 - 283,878,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,179,727 - 27,295,046 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1227,179,747 - 27,289,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603515,489,829 - 15,605,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,632,048 - 22,747,156 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476022,632,125 - 22,751,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptbp3
364 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:368
Count of miRNA genes:218
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000022107
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 54 38 19 38 4 4 65 34 38 11 4
Low 5 3 3 3 4 7 9 1 3 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022107   ⟹   ENSRNOP00000022107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,315,101 - 74,399,791 (-)Ensembl
Rnor_6.0 Ensembl576,673,990 - 76,756,140 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089251   ⟹   ENSRNOP00000069354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,315,101 - 74,372,181 (-)Ensembl
Rnor_6.0 Ensembl576,674,886 - 76,756,147 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116337   ⟹   ENSRNOP00000092713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,315,101 - 74,399,791 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118205   ⟹   ENSRNOP00000084394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,360,980 - 74,398,690 (-)Ensembl
RefSeq Acc Id: NM_031346   ⟹   NP_112636
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,367 - 74,399,438 (-)NCBI
Rnor_6.0576,673,990 - 76,756,140 (-)NCBI
Rnor_5.0580,807,961 - 80,893,974 (-)NCBI
RGSC_v3.4577,551,329 - 77,635,122 (-)RGD
Celera573,136,368 - 73,217,909 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238206   ⟹   XP_006238268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,439 (-)NCBI
Rnor_6.0576,670,074 - 76,756,196 (-)NCBI
Rnor_5.0580,807,961 - 80,893,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238207   ⟹   XP_006238269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,439 (-)NCBI
Rnor_6.0576,670,074 - 76,756,196 (-)NCBI
Rnor_5.0580,807,961 - 80,893,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238208   ⟹   XP_006238270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,430 (-)NCBI
Rnor_6.0576,670,074 - 76,756,195 (-)NCBI
Rnor_5.0580,807,961 - 80,893,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110846   ⟹   XP_038966774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,430 (-)NCBI
RefSeq Acc Id: XM_039110847   ⟹   XP_038966775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,439 (-)NCBI
RefSeq Acc Id: XM_039110848   ⟹   XP_038966776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,313,536 - 74,399,353 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_112636   ⟸   NM_031346
- UniProtKB: Q9Z118 (UniProtKB/Swiss-Prot),   A6KDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238269   ⟸   XM_006238207
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UJS5 (UniProtKB/TrEMBL),   A6KDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238268   ⟸   XM_006238206
- Peptide Label: isoform X1
- UniProtKB: Q9Z118 (UniProtKB/Swiss-Prot),   A6KDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238270   ⟸   XM_006238208
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UJS5 (UniProtKB/TrEMBL),   A6KDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069354   ⟸   ENSRNOT00000089251
RefSeq Acc Id: ENSRNOP00000022107   ⟸   ENSRNOT00000022107
RefSeq Acc Id: XP_038966775   ⟸   XM_039110847
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AIH3 (UniProtKB/TrEMBL),   A6KDW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966774   ⟸   XM_039110846
- Peptide Label: isoform X3
- UniProtKB: A6KDW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966776   ⟸   XM_039110848
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AIH3 (UniProtKB/TrEMBL),   A6KDW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092713   ⟸   ENSRNOT00000116337
RefSeq Acc Id: ENSRNOP00000084394   ⟸   ENSRNOT00000118205
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z118-F1-model_v2 AlphaFold Q9Z118 1-523 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621671 AgrOrtholog
BioCyc Gene G2FUF-41150 BioCyc
Ensembl Genes ENSRNOG00000016334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022107 ENTREZGENE
  ENSRNOP00000022107.2 UniProtKB/TrEMBL
  ENSRNOP00000069354 ENTREZGENE
  ENSRNOP00000069354.2 UniProtKB/TrEMBL
  ENSRNOP00000084394.1 UniProtKB/TrEMBL
  ENSRNOP00000092713 ENTREZGENE
  ENSRNOP00000092713.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022107 ENTREZGENE
  ENSRNOT00000022107.4 UniProtKB/TrEMBL
  ENSRNOT00000089251 ENTREZGENE
  ENSRNOT00000089251.2 UniProtKB/TrEMBL
  ENSRNOT00000116337 ENTREZGENE
  ENSRNOT00000116337.1 UniProtKB/TrEMBL
  ENSRNOT00000118205.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HnRNP-L/PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTBP1_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ROD1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83515 UniProtKB/Swiss-Prot
NCBI Gene 83515 ENTREZGENE
PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPYRIMIDINE TRACT-BINDING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptbp3 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JV54_RAT UniProtKB/TrEMBL
  A0A8I6A1W2_RAT UniProtKB/TrEMBL
  A0A8I6AIH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UJS5 ENTREZGENE, UniProtKB/TrEMBL
  A6KDW6 ENTREZGENE, UniProtKB/TrEMBL
  PTBP3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Ptbp3  polypyrimidine tract binding protein 3  Rod1  ROD1 regulator of differentiation 1 (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rod1  ROD1 regulator of differentiation 1 (S. pombe)    regulator of differentiation (in S. pombe) 1  Name updated 1299863 APPROVED
2002-08-07 Rod1  regulator of differentiation (in S. pombe) 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains four RNA binding domains 704461
gene_expression expressed in hematopoetic cells and tissues 704461