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Gene: Spata31g1 (SPATA31 subfamily G member 1) Rattus norvegicus

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Symbol:

Spata31g1

Name:

SPATA31 subfamily G member 1

RGD ID:

2321337

Description:

Orthologous to human SPATA31G1 (SPATA31 subfamily G member 1); INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); aflatoxin B1 (ortholog); aristolochic acid A (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100360821; rCG55159-like; spermatogenesis-associated protein 31G1; uncharacterized protein C9orf131 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,995,800 - 61,999,889 (+)	NCBI		GRCr8
mRatBN7.2	5	57,199,980 - 57,204,069 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,200,000 - 57,204,070 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	58,416,058 - 58,421,991 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,416,432 - 58,420,342 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,941,527 - 62,945,979 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,461,938 - 59,465,896 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	55,789,097 - 55,795,032 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata31g1	Rat	acromesomelic dysplasia, Maroteaux type		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Acromesomelic dysplasia 1 and Maroteaux type	ClinVar	PMID:28492532
Spata31g1	Rat	anauxetic dysplasia		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anauxetic dysplasia	ClinVar	PMID:28492532
Spata31g1	Rat	autosomal recessive distal hereditary motor neuronopathy 2		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive distal spinal muscular atrophy 2	ClinVar	PMID:28492532
Spata31g1	Rat	distal arthrogryposis type 1A		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Arthrogryposis more ...	ClinVar	PMID:28492532
Spata31g1	Rat	frontotemporal dementia and/or amyotrophic lateral sclerosis 6		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Frontotemporal dementia and/or amyotrophic lateral sclerosis 6	ClinVar	PMID:28492532
Spata31g1	Rat	galactosemia		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase	ClinVar	PMID:28492532
Spata31g1	Rat	hyperphosphatasia with impaired intellectual development syndrome 2		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: GLYCOSYLPHOSPHATIDYLINOSITOL BIOSYNTHESIS DEFECT 6	ClinVar	PMID:22683086 more ...
Spata31g1	Rat	paraplegia		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spastic paraplegia	ClinVar	PMID:23332916 more ...
Spata31g1	Rat	primary ciliary dyskinesia		ISO	SPATA31G1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata31g1	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	SPATA31G1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of SPATA31G1 mRNA	CTD	PMID:22079256
Spata31g1	Rat	aflatoxin B1	increases methylation	ISO	SPATA31G1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of SPATA31G1 gene	CTD	PMID:27153756
Spata31g1	Rat	aristolochic acid A	increases expression	ISO	SPATA31G1 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of SPATA31G1 mRNA	CTD	PMID:33212167
Spata31g1	Rat	benzo[a]pyrene	increases mutagenesis	ISO	SPATA31G1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased mutagenesis of SPATA31G1 gene	CTD	PMID:25435355
Spata31g1	Rat	benzo[a]pyrene	affects methylation	ISO	SPATA31G1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SPATA31G1 exon	CTD	PMID:27901495
Spata31g1	Rat	folic acid	decreases expression	ISO	SPATA31G1 (Homo sapiens)	6480464	Folic Acid results in decreased expression of SPATA31G1 mRNA	CTD	PMID:21867686
Spata31g1	Rat	potassium chromate	multiple interactions	ISO	SPATA31G1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of SPATA31G1 mRNA	CTD	PMID:22079256
Spata31g1	Rat	potassium chromate	increases expression	ISO	SPATA31G1 (Homo sapiens)	6480464	potassium chromate(VI) results in increased expression of SPATA31G1 mRNA	CTD	PMID:22079256

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Spata31g1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,995,800 - 61,999,889 (+)	NCBI		GRCr8
mRatBN7.2	5	57,199,980 - 57,204,069 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,200,000 - 57,204,070 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	58,416,058 - 58,421,991 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,416,432 - 58,420,342 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,941,527 - 62,945,979 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,461,938 - 59,465,896 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	55,789,097 - 55,795,032 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

SPATA31G1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,041,095 - 35,045,986 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,041,095 - 35,045,986 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	35,041,092 - 35,045,983 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,031,102 - 35,035,988 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	34,973,075 - 34,977,961 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	34,996,685 - 35,001,571 (+)	NCBI		HuRef
CHM1_1	9	35,040,938 - 35,045,824 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,060,274 - 35,065,165 (+)	NCBI		T2T-CHM13v2.0

Spata31g1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	42,969,946 - 42,974,325 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	42,969,604 - 42,983,640 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	42,969,946 - 42,974,325 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	42,969,604 - 42,983,640 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	42,982,832 - 42,987,197 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	42,991,060 - 42,995,425 (+)	NCBI		MGSCv36	mm8
Celera	4	43,000,115 - 43,004,480 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	22.95	NCBI

Spata31g1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004958072	16 - 1,146 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPATA31G1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	89,532,976 - 89,571,418 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	89,539,343 - 89,572,394 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	34,892,418 - 34,896,577 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	35,698,610 - 35,702,395 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,697,549 - 35,702,395 (+)	Ensembl	panpan1.1		panPan2

SPATA31G1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	51,624,571 - 51,629,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	51,625,604 - 51,629,131 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,193,829 - 50,197,939 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	52,690,464 - 52,694,574 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	52,691,048 - 52,694,575 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,234,568 - 51,238,678 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,219,706 - 51,223,816 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	51,921,525 - 51,925,635 (+)	NCBI		UU_Cfam_GSD_1.0

Spata31g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	166,527,515 - 166,531,756 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,075,250 - 3,079,233 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,074,901 - 3,079,980 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA31G1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	235,842,554 - 235,848,767 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	235,844,826 - 235,849,556 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	263,369,897 - 263,374,462 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA31G1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	45,571,060 - 45,575,282 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	45,571,177 - 45,574,796 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	42,687,678 - 42,691,430 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata31g1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624915	240,678 - 246,151 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Spata31g1
25 total Variants

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
5	57201310	57201311	C	G	snv	M520/NRrrcMcwi (2019NG), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), European Variation Archive Release 6, European Variation Archive Release 4, European Variation Archive Release 3, MR/NRrrc (2022)	View more Information
5	57202762	57202763	T	G	snv	MR/NRrrc (2022), M520/NRrrcMcwi (2019NG), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), European Variation Archive Release 6, European Variation Archive Release 3, European Variation Archive Release 4	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	27
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000039366, ENSRNOT00000073151
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
6	11	15	40	36	38	12	24	12	6	95	60	22	9	29	26


RefSeq Transcripts	NM_001419539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002726509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039366 ⟹ ENSRNOP00000035213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	57,200,000 - 57,204,070 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,416,432 - 58,420,342 (+)	Ensembl

RefSeq Acc Id:

NM_001419539 ⟹ NP_001406468

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,995,800 - 61,999,889 (+)	NCBI
mRatBN7.2	5	57,199,980 - 57,204,069 (+)	NCBI


Protein RefSeqs	NP_001406468	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98715	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035213
	ENSRNOP00000035213.7

Ensembl Acc Id:

ENSRNOP00000035213 ⟸ ENSRNOT00000039366

RefSeq Acc Id:	NP_001406468 ⟸ NM_001419539
- UniProtKB:	D4A3J0 (UniProtKB/TrEMBL), A6IIZ5 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3J0-F1-model_v2	AlphaFold	D4A3J0	1-1191	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13693671

Promoter ID:

EPDNEW_R4191

Type:

initiation region

Name:

LOC100360821_1

Description:

rCG55159-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	58,416,406 - 58,416,466	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-41528	BioCyc
Ensembl Genes	ENSRNOG00000022601	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039366	ENTREZGENE
	ENSRNOT00000039366.7	UniProtKB/TrEMBL
InterPro	UPF_C9orf131	UniProtKB/TrEMBL
NCBI Gene	100360821	ENTREZGENE
PANTHER	PTHR21777	UniProtKB/TrEMBL
	RCG55159-LIKE	UniProtKB/TrEMBL
PhenoGen	Spata31g1	PhenoGen
RatGTEx	ENSRNOG00000022601	RatGTEx
UniProt	A6IIZ5	ENTREZGENE, UniProtKB/TrEMBL
	D4A3J0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-14	Spata31g1	SPATA31 subfamily G member 1	LOC100360821	rCG55159-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-05	LOC100360821	rCG55159-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar