SPATA31G1 (SPATA31 subfamily G member 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SPATA31G1 (SPATA31 subfamily G member 1) Sus scrofa
Analyze
Symbol: SPATA31G1 (Ensembl: C9orf131)
Name: SPATA31 subfamily G member 1 (Ensembl:chromosome 1 C9orf131 homolog)
RGD ID: 13842538
Description: ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C1H9orf131; chromosome 1 C9orf131 homolog; uncharacterized protein C9orf131 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,842,554 - 235,848,767 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,844,826 - 235,849,556 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,369,897 - 263,374,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SPATA31G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,842,554 - 235,848,767 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,844,826 - 235,849,556 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,369,897 - 263,374,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA31G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,041,095 - 35,045,986 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,041,095 - 35,045,986 (+)EnsemblGRCh38hg38GRCh38
GRCh37935,041,092 - 35,045,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,031,102 - 35,035,988 (+)NCBINCBI36Build 36hg18NCBI36
Celera934,973,075 - 34,977,961 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,996,685 - 35,001,571 (+)NCBIHuRef
CHM1_1935,040,938 - 35,045,824 (+)NCBICHM1_1
T2T-CHM13v2.0935,060,274 - 35,065,165 (+)NCBIT2T-CHM13v2.0
Spata31g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39442,969,946 - 42,974,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl442,969,604 - 42,983,640 (+)EnsemblGRCm39 Ensembl
GRCm38442,969,946 - 42,974,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl442,969,604 - 42,983,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv37442,982,832 - 42,987,197 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36442,991,060 - 42,995,425 (+)NCBIMGSCv36mm8
Celera443,000,115 - 43,004,480 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map422.95NCBI
Spata31g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,995,800 - 61,999,889 (+)NCBIGRCr8
mRatBN7.2557,199,980 - 57,204,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,200,000 - 57,204,070 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0558,416,058 - 58,421,991 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,416,432 - 58,420,342 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,941,527 - 62,945,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,461,938 - 59,465,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,789,097 - 55,795,032 (+)NCBICelera
Cytogenetic Map5q22NCBI
Spata31g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495807216 - 1,146 (+)NCBIChiLan1.0ChiLan1.0
SPATA31G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,532,976 - 89,571,418 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1989,539,343 - 89,572,394 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,892,418 - 34,896,577 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,698,610 - 35,702,395 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,697,549 - 35,702,395 (+)Ensemblpanpan1.1panPan2
SPATA31G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,624,571 - 51,629,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,625,604 - 51,629,131 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,193,829 - 50,197,939 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,690,464 - 52,694,574 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11151,234,568 - 51,238,678 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,219,706 - 51,223,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,921,525 - 51,925,635 (+)NCBIUU_Cfam_GSD_1.0
Spata31g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947166,527,515 - 166,531,756 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,075,250 - 3,079,233 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,074,901 - 3,079,980 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA31G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11245,571,060 - 45,575,282 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1245,571,177 - 45,574,796 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603842,687,678 - 42,691,430 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata31g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624915240,678 - 246,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPATA31G1
85 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 3 2 2 20 2 1
Below cutoff 3 2 3 3 2 3

Sequence


RefSeq Acc Id: ENSSSCT00000005835   ⟹   ENSSSCP00000005691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,842,554 - 235,848,767 (+)Ensembl
RefSeq Acc Id: XM_013986268   ⟹   XP_013841722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11235,844,826 - 235,849,556 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013841722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000005691.5
  ENSSSCP00065020964.1
RefSeq Acc Id: XP_013841722   ⟸   XM_013986268
- UniProtKB: A0A8D1YIU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005691   ⟸   ENSSSCT00000005835
Protein Domains
SPATA31


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005298 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00065035634 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005835.5 UniProtKB/TrEMBL
  ENSSSCT00065048553.1 UniProtKB/TrEMBL
InterPro SPATA31/FAM205 UniProtKB/TrEMBL
  UPF_C9orf131 UniProtKB/TrEMBL
NCBI Gene C1H9orf131 ENTREZGENE
PANTHER PTHR21777 UniProtKB/TrEMBL
  RCG55159-LIKE UniProtKB/TrEMBL
Pfam FAM75 UniProtKB/TrEMBL
UniProt A0A8D1YIU0 ENTREZGENE, UniProtKB/TrEMBL
  F1SIH9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85970 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-11 SPATA31G1  SPATA31 subfamily G member 1  C1H9orf131  chromosome 1 C9orf131 homolog  Symbol and/or name change 19259463 PROVISIONAL