Cntln (centlein) - Rat Genome Database

Name: Cntln
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cntln (centlein) Rattus norvegicus

Analyze

Symbol:

Cntln

Name:

centlein

RGD ID:

1308101

Description:

Predicted to enable protein domain specific binding activity; protein kinase binding activity; and protein-macromolecule adaptor activity. Predicted to be involved in centriole-centriole cohesion and protein localization to organelle. Predicted to be located in cytosol; microtubule organizing center; and nucleoplasm. Orthologous to human CNTLN (centlein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

centlein, centrosomal protein; centrosomal protein; FLJ20276; LOC313331; LOC679640; RGD1308101; RGD1308101_predicted; similar to CLIP-190 CG5020-PA, isoform A; similar to hypothetical protein FLJ20276; similar to hypothetical protein FLJ20276 (predicted)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNTLN (centlein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cntln (centlein, centrosomal protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cntln (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNTLN (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNTLN (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cntln (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNTLN (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNTLN (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cntln (centlein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RBBP6 (RB binding protein 6, ubiquitin ligase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CNTLN (centlein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cntln (centlein, centrosomal protein)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cntln (centlein, centrosomal protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cntln	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI		GRCr8
mRatBN7.2	5	99,295,865 - 99,576,402 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	99,296,000 - 99,576,396 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	101,848,671 - 101,959,009 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	103,636,983 - 103,747,285 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	103,659,530 - 103,769,855 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	103,251,986 - 103,367,088 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	103,251,986 - 103,366,264 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	107,173,114 - 107,366,594 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	103,942,784 - 104,049,783 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	103,747,276 - 104,091,234 (+)	NCBI
Celera	5	97,985,522 - 98,089,303 (+)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

folic acid (ISO)

gentamycin (EXP)

inulin (ISO)

L-methionine (ISO)

leflunomide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

resveratrol (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

centriole-centriole cohesion (IEA,ISO)

protein localization to organelle (IEA,ISO)

Cellular Component

centriole (IEA,ISO)

centrosome (IEA,ISO)

cytoplasm (ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

protein domain specific binding (IEA,ISO)

protein kinase binding (IEA,ISO)

protein-macromolecule adaptor activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:15057822	PMID:18086554	PMID:19056867	PMID:24554434

Genomics

Comparative Map Data

Cntln
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI		GRCr8
mRatBN7.2	5	99,295,865 - 99,576,402 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	99,296,000 - 99,576,396 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	101,848,671 - 101,959,009 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	103,636,983 - 103,747,285 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	103,659,530 - 103,769,855 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	103,251,986 - 103,367,088 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	103,251,986 - 103,366,264 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	107,173,114 - 107,366,594 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	103,942,784 - 104,049,783 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	103,747,276 - 104,091,234 (+)	NCBI
Celera	5	97,985,522 - 98,089,303 (+)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

CNTLN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	17,135,040 - 17,528,634 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	17,134,982 - 17,503,923 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	17,135,038 - 17,503,921 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	17,125,038 - 17,493,917 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	17,226,567 - 17,493,920	NCBI
Celera	9	17,063,810 - 17,432,405 (+)	NCBI		Celera
Cytogenetic Map	9	p22.2	NCBI
HuRef	9	17,098,828 - 17,466,175 (+)	NCBI		HuRef
CHM1_1	9	17,134,947 - 17,503,979 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	17,147,678 - 17,548,946 (+)	NCBI		T2T-CHM13v2.0

Cntln
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	84,800,024 - 85,050,160 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	84,802,546 - 85,050,158 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	84,881,787 - 85,131,923 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	84,884,309 - 85,131,921 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	84,530,231 - 84,777,822 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	84,355,558 - 84,603,149 (+)	NCBI		MGSCv36	mm8
Celera	4	83,393,175 - 83,645,222 (+)	NCBI		Celera
Cytogenetic Map	4	C4	NCBI
cM Map	4	40.2	NCBI

Cntln
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955434	19,811,100 - 20,118,185 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNTLN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	107,056,308 - 107,408,801 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	107,059,237 - 107,414,633 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	16,958,911 - 17,317,044 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	17,455,498 - 17,804,123 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	17,455,576 - 17,804,123 (+)	Ensembl	panpan1.1		panPan2

CNTLN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	37,182,288 - 37,492,121 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	37,061,451 - 37,492,049 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	35,834,165 - 36,143,007 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	38,095,981 - 38,405,183 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	38,096,079 - 38,405,875 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	36,788,102 - 37,108,588 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	36,584,883 - 36,902,010 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	37,237,866 - 37,546,424 (+)	NCBI		UU_Cfam_GSD_1.0

Cntln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	151,916,641 - 152,229,602 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936771	91,750 - 405,501 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936771	91,834 - 405,436 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTLN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	205,370,499 - 205,697,786 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	205,371,716 - 205,697,831 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	229,089,937 - 229,435,748 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNTLN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	62,157,153 - 62,511,938 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	62,156,609 - 62,511,412 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	50,305,998 - 50,670,724 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntln
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	21,163,845 - 21,499,031 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	21,163,787 - 21,500,649 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cntln
1162 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	523
Count of miRNA genes:	250
Interacting mature miRNAs:	307
Transcripts:	ENSRNOT00000008757
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	99016066	119085810	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1600362	Mcs19	Mammary carcinoma susceptibility QTL 19	2.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	99485997	103690167	Rat

Markers in Region

D5Rat196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	99,485,997 - 99,486,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	103,265,614 - 103,265,749	NCBI	Rnor6.0
Rnor_5.0	5	107,265,415 - 107,265,550	UniSTS	Rnor5.0
RGSC_v3.4	5	103,956,411 - 103,956,547	RGD	RGSC3.4
RGSC_v3.4	5	103,956,412 - 103,956,547	UniSTS	RGSC3.4
RGSC_v3.1	5	103,961,587 - 103,961,975	RGD
Celera	5	97,999,166 - 97,999,301	UniSTS
SHRSP x BN Map	5	58.1599	UniSTS
SHRSP x BN Map	5	58.1599	RGD
Cytogenetic Map	5	q31	UniSTS

BF401796

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	99,335,709 - 99,335,901 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	103,063,259 - 103,063,450	NCBI	Rnor6.0
Rnor_5.0	5	107,067,573 - 107,067,764	UniSTS	Rnor5.0
RGSC_v3.4	5	103,798,712 - 103,798,903	UniSTS	RGSC3.4
Celera	5	97,864,802 - 97,864,993	UniSTS
RH 3.4 Map	5	741.1	UniSTS
Cytogenetic Map	5	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			11		3				6	16	37	1
Low	3	43	43	38	16	38	8	9	68	19	4	10	8
Below cutoff			3	3		3		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001114402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB369315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF394214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU759324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB699924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008757 ⟹ ENSRNOP00000008757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	99,296,414 - 99,576,396 (+)	Ensembl
Rnor_6.0 Ensembl	5	103,251,986 - 103,366,264 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098986 ⟹ ENSRNOP00000097246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	99,296,000 - 99,576,396 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112551 ⟹ ENSRNOP00000080911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	99,296,000 - 99,576,396 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114509 ⟹ ENSRNOP00000097573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	99,296,000 - 99,576,396 (+)	Ensembl

RefSeq Acc Id:

NM_001114402 ⟹ NP_001107874

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,518,466 - 104,622,488 (+)	NCBI
mRatBN7.2	5	99,472,376 - 99,576,399 (+)	NCBI
Rnor_6.0	5	103,251,986 - 103,367,088 (+)	NCBI
Rnor_5.0	5	107,173,114 - 107,366,594 (+)	NCBI
RGSC_v3.4	5	103,942,784 - 104,049,783 (+)	RGD
Celera	5	97,985,522 - 98,089,303 (+)	RGD

Sequence:

show sequence

ATGAATCTTCAAGATGAATTGGATGAGCTTAAAATATATATGACTATTGATAAAACAACAATAC
AGGAATTGAACAGATGCATGGCAGAGAAAAGAGAAGAACAACTCTTTAGACACCATGAAGATGC
TGGGGTCAAGAAGAGTACTCCAGAGAAGAATGAGAAAGCAATATCGGAGCAGACATTAGAGAAG
GTCATTGAGTTGGAAAATCGGCTAAAATCTTTTGAGAAAAACTCAAGAAAATTAAAAGAAGAGA
GTAAGAAATTAAAGAAAGAAAATGATTTCCTGAAATCCCACTTACAACACTATCAAGAAGACTC
GGAGAGCAGAGGAAAGGAGCTAGAGAAACTACTGAGAGTGAGCAGCAGTGTAGAACAGGACAAA
AGTGAGCTTCAAACAAAAGTCACTGCTCTGGAGAGGGAGGTCACTACGCTGAGGAGACAAGTGG
CAAAAGCTAAGGCTTTGAGAGATGAAAACGAAGAGGTGGTGAATCCAGAGGAAAAGGAACACTG
CCCAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCAGCACTGTGACTGC
AAGACAACCACTACCAAGGTGAAATTTAAAGCTGCCAAGAAAAAGTGCTCTGTGGGTCGCCACC
ACACTGTTCTCAATCACTCCGTCAAGGTTATGAGCCATGTGGAGAACCTCAGCAAGGATGGCTG
GGAGGACATGAGTGAAGGCAGCAGTGATTCTGAAACACAAACCTTTCAAAATTTGGGAACAGTT
ATTGTGGAAACATCCCAGAATATAAGGCCTATAGAAAATGATGGAAACCAGAAGGAAACTGACC
AAACAGAAGACAGCCGTGCTCAACAAGAAGTGCAGACATACTCCTGTGAGGACCTCAAGGCCCC
ACAGAATACGAAGAAAATGACTTTTCAAAACAAGAGTGGAAGTCTACAGAAGAACTTACACAGT
GCCCTTCCTGCCAGAGTTAACAGAGAAAAGTGCAAAACTAAACCTGCCCAGAAATCCAGTAGCA
ACACTATTTTATTACGAGAACGGATTGTATCCTTGCAGCAACAAAACAGTTTGCTTCAGAATGC
CAGGAAAGCAGCAGAGTCGTCTGCTAAAGAATTTAAAGAAGCAAATGAAAAACTCCTCCATCAA
CAGCAGATATCTGATCACCGATTCCAGACCAGCAGGCAGACAATAAAGCTAACTCTTGATTTAG
CTGAACTTCGAAAAGAGAAAGAAGATTTGTTGAAGAAAGTGGAGTCTTCATCTGACATCACAAG
CTTGGCAGAAGAAGTTTCCAGAATAATGGCCCCACAGATACAAGTTACCACACTGGGTCCTTCA
AGGAGCACGGATTTGGAAATAAAGCAATTGCAGTGTAAACTAAAGAATGCAACTAACGAACTCA
CTAAGCAGTCCTCGAGTGTGAAGTCGCTGAAGCTGGAACTTCTGGCGAAGGATGACCACATGAA
GGCGATGCAGGAGAAGATGTCTCGAATGGAGAGAGATATAACCATGAAAAGACACCTGATTGAG
GACTTGAAATTTCGACAGAAAATAAATTCAGAAAGTAATGAGAGTTTTAATGAAATGTTAGGAA
CTCTTGAAAAAAAGGATCTCAAGATGAATCTCCTGATATCAAAACTAAATGACACGGAGACAGC
CATGGCTCAGATCAAGAGCGCAGCGTCGGAGCAGCTCCAAGGCTTGGCGTTGCAGAGTGAGCAG
GTCCTGGAAGGCACGCAGAAGAAACTGCTGCTGGCCAATGAAAAGATCGAGGAGTTCACTGTCT
TTGTGCAGGCTTTGGTCAATGAGTTACAAAGTGATGCCCATAGGACAAGACAACAAGTCAGAGA
GCTTAGGCAGACGCAGAAAAGCAGACATGCTTGTAAAACCTCAACCCATAAAGCCCAGACCTTG
GCCGCTTCCATCCTGAACATCTCACGGTCAGACCTAGAAGAAATATTGCACACAGGAGATGAAA
TGGAAATCGAGAAGACAAAGATAGATGCTGAAAATGACAAGGACTGGATGTTGTACATTCAGAA
ACTTCTCCAAGGACAGCTTCCTTTTGCATCATATTTACTAGAAGCAGTGCTGGGGAAAATAAAG
GAAAACAAGAAGCTGACTGAAGGATATTTCACAGTCATGAAAGACATTAAATAAAGTTGCAGCA
GACCTGTTTTCAAATGCAGGAACTTGGTGTGCTGCAGTGGTGAACAGTGCAGATGCTGTAAACA
GTCACTGCTTCAGCAAGCAGCGGGCAGCTTCTACCCAGCAAAGGCTGCTGAGACTGACCGCTGA
ACCGATGAAGCTAACCAAGTGCTCGGCCTCGCCAAAGGGAAGTCTAGCATTTGAATGCTGGCTG
TTATCCCCAATCAATGCAAACTTAAAATGGTTTCCTTCCAGTGCTTAAGAAAACAAAACAAGCT
TCTCACAGGCAAATGGGCCTGAGTATAAAATGAAAAAGTTATAAATAAAGGACTTAATATAAAC
TCATATGAAAACTAGATTTTTTATATAAAACTATTATAAATGAGATCCAGTGAACAACATCTTT
ACATGGTGAGAAAGTATGAAGTGAATTATCCTAATGTGAAGGAGGAGCACTGAGTGAAGCCAAT
TGTATAGCTCCATTGTAACTATTCTCATTGACACACTGGATTATACGGGACATACTCTGTTTTT
CTAGAACTCTCTGGATAAACAAGAACCTTTTCCTCCTCTGTCTGCTTGTGCTGCTGTATAAATC
AGCAAAGACCAGAACCCCAGTGTGTAATGTTGCTCTAGACCTAGCAGAGCTCCTACCACGGCCA
TCTAATTAACAATGCCTTCTCACTGTGATGGGAGCATTGTATGTGATTGTTACCACCCCCTCCC
TGCACGTCCTCACTGAGTTCTTGCCACACATTCTTGGAGCCTCTGAGTCACTGAACTTGGCCTC
TATGTTTGCTGTTGGGGCCATCTTTGCAGAATACTTTGTAACTGTAGGTATGCCTGTCTTCTTA
TTACCCAGGCTCACTTTATCAGTCCTGTCATAGCGTATTTCTGAAAATCTTACTGTTAACCTGA
AATCATCTGTTTTTAATATGCTCACTCTTCGTTTTATGGTTCATCCTTATTTCCTCCTTTAAAA
TGTAGATCCCATGAGATTAAGGTAGGTGTTGGCAAATTGAGGCCCATAGCCAAATCTAGCCTGC
CACCTACTTTATAGAGTTCACAGACTAAACATTTTTCTATTTTATTAAACTGTTTAAAAACAAT
ACTTTGTAGCATGTAAAAATCATATGAAATTCAATTTTAATGTCTTATCAATAAAGATTTATTG
AGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039110761 ⟹ XP_038966689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,463,960 - 104,622,491 (+)	NCBI
mRatBN7.2	5	99,417,874 - 99,576,402 (+)	NCBI

RefSeq Acc Id:

XM_039110763 ⟹ XP_038966691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,498,389 - 104,622,491 (+)	NCBI
mRatBN7.2	5	99,454,428 - 99,576,402 (+)	NCBI

RefSeq Acc Id:

XM_063288373 ⟹ XP_063144443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288374 ⟹ XP_063144444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288375 ⟹ XP_063144445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288376 ⟹ XP_063144446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288377 ⟹ XP_063144447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288378 ⟹ XP_063144448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288379 ⟹ XP_063144449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288380 ⟹ XP_063144450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288381 ⟹ XP_063144451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288382 ⟹ XP_063144452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288383 ⟹ XP_063144453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,622,491 (+)	NCBI

RefSeq Acc Id:

XM_063288384 ⟹ XP_063144454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,601,985 (+)	NCBI

RefSeq Acc Id:

XM_063288385 ⟹ XP_063144455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,588,899 (+)	NCBI

RefSeq Acc Id:

XM_063288387 ⟹ XP_063144457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,601,985 (+)	NCBI

RefSeq Acc Id:

XM_063288388 ⟹ XP_063144458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,588,434 (+)	NCBI

RefSeq Acc Id:

XM_063288389 ⟹ XP_063144459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,552,367 (+)	NCBI

RefSeq Acc Id:

XM_063288390 ⟹ XP_063144460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,552,319 (+)	NCBI

RefSeq Acc Id:

XM_063288391 ⟹ XP_063144461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	104,340,801 - 104,533,440 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001107874	(Get FASTA)	NCBI Sequence Viewer
	XP_038966689	(Get FASTA)	NCBI Sequence Viewer
	XP_038966691	(Get FASTA)	NCBI Sequence Viewer
	XP_063144443	(Get FASTA)	NCBI Sequence Viewer
	XP_063144444	(Get FASTA)	NCBI Sequence Viewer
	XP_063144445	(Get FASTA)	NCBI Sequence Viewer
	XP_063144446	(Get FASTA)	NCBI Sequence Viewer
	XP_063144447	(Get FASTA)	NCBI Sequence Viewer
	XP_063144448	(Get FASTA)	NCBI Sequence Viewer
	XP_063144449	(Get FASTA)	NCBI Sequence Viewer
	XP_063144450	(Get FASTA)	NCBI Sequence Viewer
	XP_063144451	(Get FASTA)	NCBI Sequence Viewer
	XP_063144452	(Get FASTA)	NCBI Sequence Viewer
	XP_063144453	(Get FASTA)	NCBI Sequence Viewer
	XP_063144454	(Get FASTA)	NCBI Sequence Viewer
	XP_063144455	(Get FASTA)	NCBI Sequence Viewer
	XP_063144457	(Get FASTA)	NCBI Sequence Viewer
	XP_063144458	(Get FASTA)	NCBI Sequence Viewer
	XP_063144459	(Get FASTA)	NCBI Sequence Viewer
	XP_063144460	(Get FASTA)	NCBI Sequence Viewer
	XP_063144461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A9ZSY0	(Get FASTA)	NCBI Sequence Viewer
	BAF98578	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008757.6
	ENSRNOP00000080911.1
	ENSRNOP00000097246
	ENSRNOP00000097246.1
	ENSRNOP00000097573.1

RefSeq Acc Id:

NP_001107874 ⟸ NM_001114402

- UniProtKB:

A9ZSY0 (UniProtKB/Swiss-Prot), A0A8I6ASB3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLQDELDELKIYMTIDKTTIQELNRCMAEKREEQLFRHHEDAGVKKSTPEKNEKAISEQTLEK
VIELENRLKSFEKNSRKLKEESKKLKKENDFLKSHLQHYQEDSESRGKELEKLLRVSSSVEQDK
SELQTKVTALEREVTTLRRQVAKAKALRDENEEVVNPEEKEHCPTDKAKSEMATTDVRAQHCDC
KTTTTKVKFKAAKKKCSVGRHHTVLNHSVKVMSHVENLSKDGWEDMSEGSSDSETQTFQNLGTV
IVETSQNIRPIENDGNQKETDQTEDSRAQQEVQTYSCEDLKAPQNTKKMTFQNKSGSLQKNLHS
ALPARVNREKCKTKPAQKSSSNTILLRERIVSLQQQNSLLQNARKAAESSAKEFKEANEKLLHQ
QQISDHRFQTSRQTIKLTLDLAELRKEKEDLLKKVESSSDITSLAEEVSRIMAPQIQVTTLGPS
RSTDLEIKQLQCKLKNATNELTKQSSSVKSLKLELLAKDDHMKAMQEKMSRMERDITMKRHLIE
DLKFRQKINSESNESFNEMLGTLEKKDLKMNLLISKLNDTETAMAQIKSAASEQLQGLALQSEQ
VLEGTQKKLLLANEKIEEFTVFVQALVNELQSDAHRTRQQVRELRQTQKSRHACKTSTHKAQTL
AASILNISRSDLEEILHTGDEMEIEKTKIDAENDKDWMLYIQKLLQGQLPFASYLLEAVLGKIK
ENKKLTEGYFTVMKDIK

hide sequence

RefSeq Acc Id:

ENSRNOP00000008757 ⟸ ENSRNOT00000008757

RefSeq Acc Id:	XP_038966689 ⟸ XM_039110761
- Peptide Label:	isoform X19
- UniProtKB:	A9ZSY0 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038966691 ⟸ XM_039110763
- Peptide Label:	isoform X20
- UniProtKB:	A9ZSY0 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSRNOP00000080911 ⟸ ENSRNOT00000112551

RefSeq Acc Id:

ENSRNOP00000097246 ⟸ ENSRNOT00000098986

RefSeq Acc Id:

ENSRNOP00000097573 ⟸ ENSRNOT00000114509

RefSeq Acc Id:	XP_063144443 ⟸ XM_063288373
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144450 ⟸ XM_063288380
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063144445 ⟸ XM_063288375
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144444 ⟸ XM_063288374
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144446 ⟸ XM_063288376
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063144447 ⟸ XM_063288377
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063144448 ⟸ XM_063288378
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063144449 ⟸ XM_063288379
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063144451 ⟸ XM_063288381
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063144452 ⟸ XM_063288382
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063144453 ⟸ XM_063288383
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063144454 ⟸ XM_063288384
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063144457 ⟸ XM_063288387
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063144455 ⟸ XM_063288385
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063144458 ⟸ XM_063288388
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063144459 ⟸ XM_063288389
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063144460 ⟸ XM_063288390
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063144461 ⟸ XM_063288391
- Peptide Label:	isoform X18

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A9ZSY0-F1-model_v2	AlphaFold	A9ZSY0	1-721	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308101	AgrOrtholog
BioCyc Gene	G2FUF-40856	BioCyc
Ensembl Genes	ENSRNOG00000043151	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008757.7	UniProtKB/TrEMBL
	ENSRNOT00000098986	ENTREZGENE
	ENSRNOT00000098986.1	UniProtKB/TrEMBL
	ENSRNOT00000112551.1	UniProtKB/TrEMBL
	ENSRNOT00000114509.1	UniProtKB/TrEMBL
InterPro	CNTLN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:679640	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	Cntln	ENTREZGENE
PANTHER	CENTLEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR18957	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cntln	PhenoGen
RatGTEx	ENSRNOG00000043151	RatGTEx
UniProt	A0A8I5ZRW7_RAT	UniProtKB/TrEMBL
	A0A8I6ASB3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ASX4_RAT	UniProtKB/TrEMBL
	A9ZSY0	ENTREZGENE, UniProtKB/Swiss-Prot
	F1LMT2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-02	Cntln	centlein	Cntln	centlein, centrosomal protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-12-09	Cntln	centlein, centrosomal protein	RGD1308101	similar to hypothetical protein FLJ20276	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-28	RGD1308101	similar to hypothetical protein FLJ20276	RGD1308101	similar to hypothetical protein FLJ20276 (predicted)	'predicted' is removed from gene name	2292626	APPROVED
2008-02-11	RGD1308101		RGD1308101_predicted	similar to hypothetical protein FLJ20276 (predicted)	Symbol updated	1299863	APPROVED
2008-02-11	RGD1308101_predicted	similar to hypothetical protein FLJ20276 (predicted)	LOC679640	similar to CLIP-190 CG5020-PA, isoform A	Data merged from RGD:1585949	737654	APPROVED
2006-11-19	LOC679640	similar to CLIP-190 CG5020-PA, isoform A			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1308101_predicted	similar to hypothetical protein FLJ20276 (predicted)	LOC313331_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC313331_predicted	similar to hypothetical protein FLJ20276 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar