Zdhhc21 (zinc finger DHHC-type palmitoyltransferase 21)

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Gene: Zdhhc21 (zinc finger DHHC-type palmitoyltransferase 21) Rattus norvegicus

Analyze

Symbol:

Zdhhc21

Name:

zinc finger DHHC-type palmitoyltransferase 21

RGD ID:

1305750

Description:

Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in several processes, including peptidyl-L-cysteine S-palmitoylation; regulation of establishment of endothelial barrier; and regulation of vascular associated smooth muscle contraction. Predicted to act upstream of or within hair follicle development; protein palmitoylation; and sebaceous gland development. Predicted to be located in plasma membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC21 (zinc finger DHHC-type palmitoyltransferase 21); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

palmitoyltransferase ZDHHC21; probable palmitoyltransferase ZDHHC21; zinc finger, DHHC domain containing 21; zinc finger, DHHC-type containing 21

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	97,227,621 - 97,286,866 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	97,229,345 - 97,286,537 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	99,611,105 - 99,659,736 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	101,409,446 - 101,457,993 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	101,421,958 - 101,470,589 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	100,924,621 - 100,983,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	100,924,622 - 100,977,902 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	104,943,485 - 105,005,337 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	101,682,165 - 101,730,978 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	101,688,931 - 101,728,070 (-)	NCBI
Celera	5	95,785,329 - 95,833,846 (-)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

chlorpyrifos (EXP)

choline (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

indometacin (ISO)

irinotecan (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

poly(I:C) (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vanadyl sulfate (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adrenergic receptor signaling pathway (ISO)

hair follicle development (ISO)

peptidyl-L-cysteine S-palmitoylation (IBA,ISO)

protein palmitoylation (ISO)

protein targeting to membrane (IBA)

regulation of establishment of endothelial barrier (ISO)

regulation of leukocyte adhesion to arterial endothelial cell (ISO)

regulation of vascular associated smooth muscle contraction (ISO)

sebaceous gland development (ISO)

Cellular Component

endoplasmic reticulum (IBA)

Golgi apparatus (IBA,ISO)

plasma membrane (ISO)

Molecular Function

palmitoyltransferase activity (ISO)

protein binding (ISO)

protein-cysteine S-palmitoyltransferase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16647879	PMID:19956733	PMID:19997487	PMID:22031296	PMID:23034182

Genomics

Comparative Map Data

Zdhhc21
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	97,227,621 - 97,286,866 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	97,229,345 - 97,286,537 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	99,611,105 - 99,659,736 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	101,409,446 - 101,457,993 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	101,421,958 - 101,470,589 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	100,924,621 - 100,983,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	100,924,622 - 100,977,902 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	104,943,485 - 105,005,337 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	101,682,165 - 101,730,978 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	101,688,931 - 101,728,070 (-)	NCBI
Celera	5	95,785,329 - 95,833,846 (-)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

ZDHHC21
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	14,588,797 - 14,693,432 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	14,611,071 - 14,693,432 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	14,611,069 - 14,693,430 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	14,607,028 - 14,683,474 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	14,607,027 - 14,683,469	NCBI
Celera	9	14,544,591 - 14,626,897 (-)	NCBI		Celera
Cytogenetic Map	9	p22.3	NCBI
HuRef	9	14,574,541 - 14,656,729 (-)	NCBI		HuRef
CHM1_1	9	14,611,116 - 14,693,518 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	14,620,739 - 14,703,138 (-)	NCBI		T2T-CHM13v2.0

Zdhhc21
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	82,716,975 - 82,778,892 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	82,716,975 - 82,778,195 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	82,798,738 - 82,859,897 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	82,798,738 - 82,859,958 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	82,444,642 - 82,505,565 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	82,273,794 - 82,330,738 (-)	NCBI		MGSCv36	mm8
Celera	4	81,327,649 - 81,390,311 (-)	NCBI		Celera
Cytogenetic Map	4	C3	NCBI
cM Map	4	39.4	NCBI

Zdhhc21
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	17,661,364 - 17,713,159 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	17,653,708 - 17,712,565 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZDHHC21
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	14,961,495 - 15,037,553 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	14,969,373 - 15,037,554 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	14,430,035 - 14,528,888 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ZDHHC21
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	35,073,639 - 35,139,854 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	35,079,886 - 35,131,372 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	33,720,429 - 33,782,587 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	35,981,522 - 36,043,801 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	35,981,554 - 36,029,868 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	34,685,871 - 34,748,067 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	34,477,838 - 34,540,076 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	35,134,666 - 35,196,925 (-)	NCBI		UU_Cfam_GSD_1.0

Zdhhc21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	149,783,085 - 149,852,127 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936539	8,243,274 - 8,305,044 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936539	8,243,134 - 8,304,811 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZDHHC21
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	207,836,573 - 207,912,546 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	207,836,490 - 207,913,463 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	231,595,560 - 231,605,033 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZDHHC21
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	64,890,380 - 64,983,993 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	64,905,489 - 64,956,788 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	53,108,387 - 53,203,367 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zdhhc21
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	18,873,563 - 18,937,704 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	18,876,167 - 18,937,383 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zdhhc21
191 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	44
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000013950
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat

Markers in Region

RH134292

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	97,232,874 - 97,233,075 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	100,924,726 - 100,924,926	NCBI	Rnor6.0
Rnor_5.0	5	104,947,750 - 104,947,950	UniSTS	Rnor5.0
RGSC_v3.4	5	101,682,270 - 101,682,470	UniSTS	RGSC3.4
Celera	5	95,785,434 - 95,785,634	UniSTS
RH 3.4 Map	5	727.6	UniSTS
Cytogenetic Map	5	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	14	4	16	4	1	1	74	28	21	8	1
Low	3	37	43	37	3	37	7	9		7	20	3	7
Below cutoff		2						1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY886536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000013950 ⟹ ENSRNOP00000013949

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	100,935,230 - 100,970,043 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077429 ⟹ ENSRNOP00000072168

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	97,229,345 - 97,286,537 (-)	Ensembl
Rnor_6.0 Ensembl	5	100,924,622 - 100,977,902 (-)	Ensembl

RefSeq Acc Id:

NM_001039009 ⟹ NP_001034098

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,232,770 - 97,281,308 (-)	NCBI
Rnor_6.0	5	100,924,621 - 100,977,902 (-)	NCBI
Rnor_5.0	5	104,943,485 - 105,005,337 (-)	NCBI
RGSC_v3.4	5	101,682,165 - 101,730,978 (-)	RGD
Celera	5	95,785,329 - 95,833,846 (-)	RGD

Sequence:

show sequence

GGTACTCATAAAGAACTGTTATTGAAGAGAGGCCCATATGATGGCACACGAAATGGAAAGAAAG
AAAGAAAAGAATGACTGAAGAAGATAGCACTTCTAAATGCAAGTGCCAGAAAAATCACAGCTCA
TCTCAGTGAATTTGCAAGTGGATTGTCTTCCCTGTGGGTTGGCAGGCAGTTTTAGGACTGCAGA
ATGGGTCTTCGGATTCACTTTGTTGTTGACCCTCATGGTTGGTGCTGCATGGGTTTGATTGTCT
TTGTCTGGTTATACAATATTGTTATAATTCCCAAAATTGTCCTCTTTCCTCACTATGAAGAAGG
ACATATTCCTGGCATTTTAATAATAATATTCTATGGCATTTCCATATTTTGTCTGGTTGCCTTA
GTGAGGGCCTCCCTAACTGATCCTGGAAGACTCCCTGAAAATCCCAAGATCCCACATGCAGAGC
GGGAGCTGTGGGAGCTGTGCAACAAGTGTAACTTGATGAGGCCGAAGCGCTCCCATCACTGCAG
CCGCTGTGGCCACTGCGTGAGGAGGATGGACCACCACTGTCCCTGGATAAACAACTGTGTGGGT
GAGGACAACCACTGGCTTTTTCTGCAGTTGTGCTTCTACACTGAGCTGCTTACCTGCTACGCTC
TGATGTTCTCTTTCTGCCATTATTATTATTTCCTGCCACTGAAAACACGTAATTTGGACCTCTT
TGTTGTTCGGCATGAGCTGGCTATCATGAGGCTGGCGGCCTTTATGGGCATTACTATGTTAGTG
GGAATCACTGGACTCTTTTATACACAACTGATTGGAATCATCACAGATACAACATCTATTGAAA
AAATGTCAAACTGTTGTGAAGAAATATCGCGGCCCCGAAAGCCATGGCAGCAGACCTTCTCAGA
AGTTTTTGGCACTCGTTGGAAGATCCTGTGGTTCATTCCTTTCAGGCAGAGGCAACCACTGAGA
GTTCCCTACCACTTTGCCAATCACGTCTAAACAGATGGATGGTGGGCACAGATGGGTCCTCCAT
GCTGGAAATGCATGTTACAGGTTTTATGAGAATAGAACTATGACAGTCTTCAAGTCAATTAAAA
TCCACCCACCAATCTTAGGCATCATAATGTGCCCCAGGCTTCATTTTAATAGTGATCTTGATCC
TGTTGTGGGGCTAATACATGATCTATATTTAAGTTTTAAAAGCATGTTTACTTTTAAATTAGCC
TTGCACCAGGATTCTTTAAATGCTTCTGTTACTAGACTCAAAGGCAGTGATTGGGATAAAACAA
TGGTACATATGTTTTCTTCAGTACTCGGAATATTTTAAAATCTAGTTTATAGAAATTTGAGATG
TTTTATGTTTACCTTTAAGCAGTACTAACCAAATTTGAATTTAATTCTTCAAGTTTACAAAAGT
GGATACTTTGTTATGTGTAAATTTTCCTTTTTTGAATATCAGTTAAAATGATGTTACTACTTGC
TTTTGATGTGCTGCAGGGTTTTTACAGTGCAGTGAGCAGCAAGGCGCAGTGGCTGCCTGGGAGC
AGCTCTCGGATGCTCCTCTTTCCTCCTCAGCAGCCACAGACGACACCACGGGTGTAGCGCACCA
ACTACTACCTTACTGTAAAGGAAAGATGCTTTTCTCTTCTGCAGCAGTCATTGATTGCTAATAG
AATATCTGCTCCCAGGAGACATTTGTGACCAGTCAGGCATATATTCCTGTTTTACCCTAAGATT
CTAATGACTGAAGAGGGTAGGAAGTTTGCAATAATTCCAGTTACTTCTTCAAGTGCAGTTATAG
TAAAAAGCAGATGTTTTAAATGCTCAACTGGATGGTGTGTAATGTACAGTGTAAAGAGGAAAAC
TGCTTTTAAAGTATGTATACTTTTATTTATCTGCCACTCGATCTCACTGTGCACATTGAAGGTT
TATATATTGTAGAATAGATGCTGCTCAACTTATATCAAAGTTTAAAGTAGGTCACAAAATTCAT
ATACCAGTAATCACCCCAGTTAAAATTGAATTTGCATTGGCCAGTTCTAATTTGTATCACTCTA
GAGACCTTTTATTAATGTCAGGATATTATTGTAATCTACGGTAGTGATGGTCCCTTAACAACAT
GGGTCTATTGTATGCAAAGACATTTCATATGAGTTAATTTCTTTTCATTTAGAATACTGAAAAT
GTATATGTTTTGTGTGCTTGGTGACCTTTTCCCTGAAAAGAAGTTGAACAAATCTACCATTCTT
GAACCATATACATACTTTTCTTATAAGAGTTGTAAAGTAAGGAATCATAGCTGGGAAATACTGT
GGCTAGTTCTTTCAGATACTGTAAATGTCTTATAAGATATTCTGAGTAGAATAATCTCTTTGCA
GAAATATTAATACCATATTTTCATGTTCTGATAATTATGTTTGTTATTTAAAAACTTAGAAGTG
GCAGATGGAAGCATTTATTGGTGCTAAGACATATAGCAAGTTTAATATAAGAAACATTTATAAA
GGTTAGGAAACCTACAATTAGTATGTTTTAGTCTAGGCAGAGGGTTGGATTTATGTAAGCTGAT
TGACTAAGTTGGCTGGTGACAGTTACTAAAGGGGAGTGGTGTATATCTAATGTGGGGAGGTAGG
CGTCGAATGCCTGCCTTCAGCTGTGTATGTTCAGTTCACTCAAGACCTGGAGCATCCACAGCAG
AGCCAAGTGCAGGCCCAGTGTGGAGCTCCGTAACTGCATGTACTTCTGGAGCAGAGTGGCTCTG
ACACAGAGGCAATGGGGAGGGATGATCACTTCCCCATCTGGGGGTCTGTGGATTTGGTTTGCTT
ATATTTACCACTTCTGGGCACATCATCTTCCCTTTCTCTTTGTTCTCCCTGGTCCTGACCCGTC
TCTGCAGAATTTCCTAAGTAGTCATTGGACTTAATACACAGTTTGACCTACAGAAATGCTATTA
TTGATGTATCTATAAGAATCTATATTGCAGTGTACCTATATATACTCACACAGTATTGTCCAAT
GTATGTGTCTGACCCCACGAGGGGTTTGCAATCTATTTAGATTCCTAGGGAAAAGCCTGTTGGC
CATTTCCTAGGGATTAAGCTCCTATGTTCTTTCTGCGCCCTCTTTTGGCTAATTGATGTAATTA
TTCTGGCTCTAGAGGCTTTTACTATCCTGTTAGTGGGTTGTATCGCCAATCTAGGAACGTGCCA
GAGGTGTACACTTATAGGAACATATGTATAAAAGTGTAAAGTTTTATAAACATTGAAAATGGAT
GTGTTACTGTTGGCGATGTTCCTTCTAGGTGAAGTGCTCAGCTGTATGTATGTATATTCTTGTA
TACTTTTTACTGTCGCTCACAAGTTCAGATTAGGGTAAGCTAGTTCTTGATTTTACTTTAAACC
TTATTGTGGCAACTTATTTTGTTAGCATTATAAAAACTTACTTAAAATACTATTTTATTAAAAG
ACGAAACATTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008763766 ⟹ XP_008761988

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,227,621 - 97,286,717 (-)	NCBI
Rnor_6.0	5	100,935,095 - 100,983,243 (-)	NCBI

Sequence:

show sequence

CGCAGCTCCGGGGCGCGAAGCGGAGACGGCGACGGCCGTGCCTCCGCGCGGGCGCGCGGGCATG
CCGACACCCACTCGGCCGGTCCCGGCGCCTCGGCTCCCGGAAGCGGAAGGGGAGCACGGCCCGG
CCTGGGCGGCGGAGGCGCGGAGCCGAGTGGAGAGCGGAGGAGCGGGCGGCGGTACTCATAAAGA
ACTGTTATTGAAGAGAGGCCCATATGATGGCACACGAAATGGAAAGAAAGAAAGAAAAGAATGA
CTGAAGAAGATAGCACTTCTAAATGCAAGTGCCAGAAAAATCACAGCTCATCTCAGTGAATTTG
CAAGTGGATTGTCTTCCCTGTGGGTTGGCAGGCAGTTTTAGGACTGCAGAATGGGTCTTCGGAT
TCACTTTGTTGTTGACCCTCATGGTTGGTGCTGCATGGGTTTGATTGTCTTTGTCTGGTTATAC
AATATTGTTATAATTCCCAAAATTGTCCTCTTTCCTCACTATGAAGAAGGACATATTCCTGGCA
TTTTAATAATAATATTCTATGGCATTTCCATATTTTGTCTGGTTGCCTTAGTGAGGGCCTCCCT
AACTGATCCTGGAAGACTCCCTGAAAATCCCAAGATCCCACATGCAGAGCGGGAGCTGTGGGAG
CTGTGCAACAAGTGTAACTTGATGAGGCCGAAGCGCTCCCATCACTGCAGCCGCTGTGGCCACT
GCGTGAGGAGGATGGACCACCACTGTCCCTGGATAAACAACTGTGTGGGTGAGGACAACCACTG
GCTTTTTCTGCAGTTGTGCTTCTACACTGAGCTGCTTACCTGCTACGCTCTGATGTTCTCTTTC
TGCCATTATTATTATTTCCTGCCACTGAAAACACGTAATTTGGACCTCTTTGTTGTTCGGCATG
AGCTGGCTATCATGAGGCTGGCGGCCTTTATGGGCATTACTATGTTAGTGGGAATCACTGGACT
CTTTTATACACAACTGATTGGAATCATCACAGATACAACATCTATTGAAAAAATGTCAAACTGT
TGTGAAGAAATATCGCGGCCCCGAAAGCCATGGCAGCAGACCTTCTCAGAAGTTTTTGGCACTC
GTTGGAAGATCCTGTGGTTCATTCCTTTCAGGCAGAGGCAACCACTGAGAGTTCCCTACCACTT
TGCCAATCACGTCTAAACAGATGGATGGTGGGCACAGATGGGTCCTCCATGCTGGAAATGCATG
TTACAGGTTTTATGAGAATAGAACTATGACAGTCTTCAAGTCAATTAAAATCCACCCACCAATC
TTAGGCATCATAATGTGCCCCAG

hide sequence

RefSeq Acc Id:

XM_008763767 ⟹ XP_008761989

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,227,621 - 97,286,866 (-)	NCBI
Rnor_6.0	5	100,935,095 - 100,983,412 (-)	NCBI

Sequence:

show sequence

AGGCTAAGGCTGGTCCTACGCAGGAAGGGTGTCGGGACACGTGTGTGCAGCTCCCCTGGGCAGG
GCCGGGCTGCAGGGAGGGGAGCACAGGTACTCATAAAGAACTGTTATTGAAGAGAGGCCCATAT
GATGGCACACGAAATGGAAAGAAAGAAAGAAAAGAATGACTGAAGAAGATAGCACTTCTAAATG
CAAGTGCCAGAAAAATCACAGCTCATCTCAGTGAATTTGCAAGTGGATTGTCTTCCCTGTGGGT
TGGCAGGCAGTTTTAGGACTGCAGAATGGGTCTTCGGATTCACTTTGTTGTTGACCCTCATGGT
TGGTGCTGCATGGGTTTGATTGTCTTTGTCTGGTTATACAATATTGTTATAATTCCCAAAATTG
TCCTCTTTCCTCACTATGAAGAAGGACATATTCCTGGCATTTTAATAATAATATTCTATGGCAT
TTCCATATTTTGTCTGGTTGCCTTAGTGAGGGCCTCCCTAACTGATCCTGGAAGACTCCCTGAA
AATCCCAAGATCCCACATGCAGAGCGGGAGCTGTGGGAGCTGTGCAACAAGTGTAACTTGATGA
GGCCGAAGCGCTCCCATCACTGCAGCCGCTGTGGCCACTGCGTGAGGAGGATGGACCACCACTG
TCCCTGGATAAACAACTGTGTGGGTGAGGACAACCACTGGCTTTTTCTGCAGTTGTGCTTCTAC
ACTGAGCTGCTTACCTGCTACGCTCTGATGTTCTCTTTCTGCCATTATTATTATTTCCTGCCAC
TGAAAACACGTAATTTGGACCTCTTTGTTGTTCGGCATGAGCTGGCTATCATGAGGCTGGCGGC
CTTTATGGGCATTACTATGTTAGTGGGAATCACTGGACTCTTTTATACACAACTGATTGGAATC
ATCACAGATACAACATCTATTGAAAAAATGTCAAACTGTTGTGAAGAAATATCGCGGCCCCGAA
AGCCATGGCAGCAGACCTTCTCAGAAGTTTTTGGCACTCGTTGGAAGATCCTGTGGTTCATTCC
TTTCAGGCAGAGGCAACCACTGAGAGTTCCCTACCACTTTGCCAATCACGTCTAAACAGATGGA
TGGTGGGCACAGATGGGTCCTCCATGCTGGAAATGCATGTTACAGGTTTTATGAGAATAGAACT
ATGACAGTCTTCAAGTCAATTAAAATCCACCCACCAATCTTAGGCATCATAATGTGCCCCAG

hide sequence

RefSeq Acc Id:

XM_008763768 ⟹ XP_008761990

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,227,621 - 97,284,178 (-)	NCBI
Rnor_6.0	5	100,935,095 - 100,980,801 (-)	NCBI

Sequence:

show sequence

GGGCGGGGGAGTGGGAGTGTGTGTTAAAGAGATAGATCATATTAGGTACAAATTAGCAGTGCTT
GATTGTAAACTCACAAATTCTGGCTTTAAGCCTTTTTTCTGTGGTTAGAGAGTTATTAAGTTGT
TCACAACCTGCAGGATTTTTCATCAGTAGAAGCATTTAATGTTATTGTGCTTAGTTCATACCTG
CGTTGGTAAACTCTGCTGTGTGTGGGCAAGCCAATCTAGCTTTTTTTCTTCTCCCTGGATGCCT
TGGCCCAGTGGCCACTTGAAGGGCAATAACTTGCTCATTTTCCCACTTAGAAGAATGTGCCTGG
TTAACACCCAGGAAAGACCTGACTTGGCCTCTTCATTTCTGGTGTTTACTGTACCTGAAATGTT
TTTCCCTGGTCTTATTTTTGGAGGAAGGTACCTGTCTCCACCCTACATTAATGTTGCTTTATGT
GTTTTTGTACCCCTGTGTTTCTCTGTGAAAATTCCCACAGAAGTTTTCCTACATGGAAACAGTG
TTTGACAGTCTGTCTTCAGTTGGTATCATTCTACGTCTCCCAAGTTATTCTTTTGTCAGGAGAG
TGCAGAAGTATGTTAGCTAGCTCAGTGTTGTTAATGGAGGTCCATTGTTAGGGAATAGATGAAG
CCAGTATACTGAGCAACAAATGCACGTGAAGGGCCAACAGCTTATGTTCAGTTTTGTCCAGAAT
GCAGTGACAGAGAGCCTTTCACGGGTGCCTTCTTGAGACCATTAAAGGAGCCAAAACACTACAG
CACCCATGTTTCCTTGGAACTCTTCTCGGAGAACTGTGTCTCAGAATGCCTTAGCTGGACTTGC
TCACCAGTTTCTGAAATGGAGTGCTGATGTCCATCCATGCTCCACTCCCTGGTCTGACATCTGG
CTTCCTACCTGGAGTAGGAACTTCGTTTCAGATCAAACCTGTAGTTTTCTTTTTCTGCTTAGAA
ACAGAGCAGACAGCAGAAGAAACGCACTTCTTTCCTGCATACTTATCATGCAACACAATGCCAG
TGGTAAGACTGCAGTAACTAAAGGACTTCTCCTCACAGTTTATTTATTTTGTGTGAATGTGTGT
GTATGCATGTGTGTGGGCACATACTTGCAAGAGCACATTCGTAAAAGTTAGAGGACCATTTAAG
GAGTTTATTCTCTCTGTCCACATTATGGGTCCCAGGAATTGAACTCAGGTCTGCAGGCTTGATG
GCAGGTGCCTTTACCCATGGAGACATCTCACTGGCCCTAAAGGGTTTATTCTAATAAATAATTC
CCTGGCTTTGGTATTCAGCAAAATAGAAAGTAGATGGATGGCTAAATGTTAGTACCACTTTTAA
TGATGGGGTGCAGGAATGCTTTTATCTAGGAATTGCTAAAGTCATACTTACCTTTAATTCACTT
CCTTTCAAGTTACCATTGGGCAGTAGTGCTTCTTTGCTGGGCAGCTCCCAGTGAGGCAGTCAGC
AGTCCTAAGTGGGCGTTATCCTCCCTAAGTTTTGCCGTGTTACAATGTTACATGTTTCAATGTT
ACAGTGAAGCCCGGAATGGACAGAGAGACAGTACACAGTTTGACTGTAGCTCCCATGTAAGACT
TAGGTCTACTTTGTTGATAATAAACTGAATATTGATGATATTTTTAAAATTATGTTAGCTCATT
GGCTGATTCCTAAAGTCAACTAGAGCCTGGTATCTCAGAGTTAACTGCCATGCTTACTCAGTTT
TTAGAGTAGAATAAACTCAAAAGTCAAGTAGCTTTATGGATGTCTTTAAAGATAGGTACATGCA
ACTTTGGTTTTTACTGTGGTGTGTTTGAAAAACGACTCCGTTATTTATATCATTTTGGATGTAG
CAGGTTAGGAGATGTAATGCTACTGCGTTATGACATTGTAGACATTTTATAGTTCAGAGGCATT
GGGATTCAGGGGCTCCATGTTGTTTGTATCCTACAGAGTGATGTTTTTCTAGATTTTAAGTCAG
TGAGTGGCTGGGGTTTGAGTCATGGATGTTTGATCTGTGCTGTTTCCTAATAATGTGATTGACA
GAAAGTGCTGTGAGGAAACCATTGAGAGCTCCAAGCCTTTTGCTGCATTACTTTGGCCATGTTG
CAAAATGTACTTGAGGCTTGCTTGCTCGTTTCCCTGGATAAAAGAATTCATTTATTTACCAGTA
GTGGGGTAGCAGCTCCTCAAGTTTGTCATACATACGTGGCCCCTAAGACCAGGACAAAGTGAAG
AGACCTGTTTGAACTTGGTTAAAGTTAGGGGCTGAGAGATGGCTCAGTGGCTAGGAGCACCTGC
TGCTCTTCTAGAGGACCTGAATTTCTTTAACATTTGTACCCTAGCAGATAATATGTAATTAATA
ACTTGGTTGAATAAAGAAGTGAATTGGTATATCCTATGTAGAGTTCTTTACAATATTATCTTTT
AAAAATTGAACTGTAGGAATTCACTTTTGTGGTTGACTCTCAGTGGTCTTGTTACAGGAAGATA
ATTTTTTGTTAGCATTTTGAATGAGAACATACATTTTACATTGCCTCTATTTATCTGTTGTGCT
TAGGGACTTGGAGCTGCACATTTGATCATCACTGACCTGACTCTCACAAGTACTCATAAAGAAC
TGTTATTGAAGAGAGGCCCATATGATGGCACACGAAATGGAAAGAAAGAAAGAAAAGAATGACT
GAAGAAGATAGCACTTCTAAATGCAAGTGCCAGAAAAATCACAGCTCATCTCAGTGAATTTGCA
AGTGGATTGTCTTCCCTGTGGGTTGGCAGGCAGTTTTAGGACTGCAGAATGGGTCTTCGGATTC
ACTTTGTTGTTGACCCTCATGGTTGGTGCTGCATGGGTTTGATTGTCTTTGTCTGGTTATACAA
TATTGTTATAATTCCCAAAATTGTCCTCTTTCCTCACTATGAAGAAGGACATATTCCTGGCATT
TTAATAATAATATTCTATGGCATTTCCATATTTTGTCTGGTTGCCTTAGTGAGGGCCTCCCTAA
CTGATCCTGGAAGACTCCCTGAAAATCCCAAGATCCCACATGCAGAGCGGGAGCTGTGGGAGCT
GTGCAACAAGTGTAACTTGATGAGGCCGAAGCGCTCCCATCACTGCAGCCGCTGTGGCCACTGC
GTGAGGAGGATGGACCACCACTGTCCCTGGATAAACAACTGTGTGGGTGAGGACAACCACTGGC
TTTTTCTGCAGTTGTGCTTCTACACTGAGCTGCTTACCTGCTACGCTCTGATGTTCTCTTTCTG
CCATTATTATTATTTCCTGCCACTGAAAACACGTAATTTGGACCTCTTTGTTGTTCGGCATGAG
CTGGCTATCATGAGGCTGGCGGCCTTTATGGGCATTACTATGTTAGTGGGAATCACTGGACTCT
TTTATACACAACTGATTGGAATCATCACAGATACAACATCTATTGAAAAAATGTCAAACTGTTG
TGAAGAAATATCGCGGCCCCGAAAGCCATGGCAGCAGACCTTCTCAGAAGTTTTTGGCACTCGT
TGGAAGATCCTGTGGTTCATTCCTTTCAGGCAGAGGCAACCACTGAGAGTTCCCTACCACTTTG
CCAATCACGTCTAAACAGATGGATGGTGGGCACAGATGGGTCCTCCATGCTGGAAATGCATGTT
ACAGGTTTTATGAGAATAGAACTATGACAGTCTTCAAGTCAATTAAAATCCACCCACCAATCTT
AGGCATCATAATGTGCCCCAG

hide sequence

RefSeq Acc Id:

XM_039109506 ⟹ XP_038965434

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,227,621 - 97,286,714 (-)	NCBI

RefSeq Acc Id:

XM_039109507 ⟹ XP_038965435

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	97,227,621 - 97,286,716 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001034098	(Get FASTA)	NCBI Sequence Viewer
	XP_008761988	(Get FASTA)	NCBI Sequence Viewer
	XP_008761989	(Get FASTA)	NCBI Sequence Viewer
	XP_008761990	(Get FASTA)	NCBI Sequence Viewer
	XP_038965434	(Get FASTA)	NCBI Sequence Viewer
	XP_038965435	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAX73398	(Get FASTA)	NCBI Sequence Viewer
	EDM10465	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001034098 ⟸ NM_001039009

- UniProtKB:

Q2TGI9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLRIHFVVDPHGWCCMGLIVFVWLYNIVIIPKIVLFPHYEEGHIPGILIIIFYGISIFCLVAL
VRASLTDPGRLPENPKIPHAERELWELCNKCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVG
EDNHWLFLQLCFYTELLTCYALMFSFCHYYYFLPLKTRNLDLFVVRHELAIMRLAAFMGITMLV
GITGLFYTQLIGIITDTTSIEKMSNCCEEISRPRKPWQQTFSEVFGTRWKILWFIPFRQRQPLR
VPYHFANHV

hide sequence

RefSeq Acc Id:	XP_008761989 ⟸ XM_008763767
- Peptide Label:	isoform X1
- UniProtKB:	Q2TGI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLRIHFVVDPHGWCCMGLIVFVWLYNIVIIPKIVLFPHYEEGHIPGILIIIFYGISIFCLVAL VRASLTDPGRLPENPKIPHAERELWELCNKCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVG EDNHWLFLQLCFYTELLTCYALMFSFCHYYYFLPLKTRNLDLFVVRHELAIMRLAAFMGITMLV GITGLFYTQLIGIITDTTSIEKMSNCCEEISRPRKPWQQTFSEVFGTRWKILWFIPFRQRQPLR VPYHFANHV hide sequence

RefSeq Acc Id:	XP_008761988 ⟸ XM_008763766
- Peptide Label:	isoform X1
- UniProtKB:	Q2TGI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLRIHFVVDPHGWCCMGLIVFVWLYNIVIIPKIVLFPHYEEGHIPGILIIIFYGISIFCLVAL VRASLTDPGRLPENPKIPHAERELWELCNKCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVG EDNHWLFLQLCFYTELLTCYALMFSFCHYYYFLPLKTRNLDLFVVRHELAIMRLAAFMGITMLV GITGLFYTQLIGIITDTTSIEKMSNCCEEISRPRKPWQQTFSEVFGTRWKILWFIPFRQRQPLR VPYHFANHV hide sequence

RefSeq Acc Id:	XP_008761990 ⟸ XM_008763768
- Peptide Label:	isoform X1
- UniProtKB:	Q2TGI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLRIHFVVDPHGWCCMGLIVFVWLYNIVIIPKIVLFPHYEEGHIPGILIIIFYGISIFCLVAL VRASLTDPGRLPENPKIPHAERELWELCNKCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVG EDNHWLFLQLCFYTELLTCYALMFSFCHYYYFLPLKTRNLDLFVVRHELAIMRLAAFMGITMLV GITGLFYTQLIGIITDTTSIEKMSNCCEEISRPRKPWQQTFSEVFGTRWKILWFIPFRQRQPLR VPYHFANHV hide sequence

RefSeq Acc Id:

ENSRNOP00000072168 ⟸ ENSRNOT00000077429

RefSeq Acc Id:

ENSRNOP00000013949 ⟸ ENSRNOT00000013950

RefSeq Acc Id:	XP_038965435 ⟸ XM_039109507
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038965434 ⟸ XM_039109506
- Peptide Label:	isoform X2

Protein Domains

Palmitoyltransferase DHHC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2TGI9-F1-model_v2	AlphaFold	Q2TGI9	1-265	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305750	AgrOrtholog
BioCyc Gene	G2FUF-40890	BioCyc
Ensembl Genes	ENSRNOG00000010484	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000072168	ENTREZGENE
	ENSRNOP00000072168.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077429	ENTREZGENE
	ENSRNOT00000077429.2	UniProtKB/TrEMBL
InterPro	Znf_DHHC	UniProtKB/TrEMBL
KEGG Report	rno:298184	UniProtKB/TrEMBL
NCBI Gene	298184	ENTREZGENE
PANTHER	PALMITOYLTRANSFERASE ZDHHC21	UniProtKB/TrEMBL
	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	zf-DHHC	UniProtKB/TrEMBL
PhenoGen	Zdhhc21	PhenoGen
PROSITE	DHHC	UniProtKB/TrEMBL
UniProt	Q2TGI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-11-11	Zdhhc21	zinc finger DHHC-type palmitoyltransferase 21	Zdhhc21	zinc finger, DHHC-type containing 21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-17	Zdhhc21	zinc finger, DHHC-type containing 21	Zdhhc21	zinc finger, DHHC domain containing 21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	Zdhhc21	zinc finger, DHHC domain containing 21	Zdhhc21_predicted	zinc finger, DHHC domain containing 21 (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-12	Zdhhc21_predicted	zinc finger, DHHC domain containing 21 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar