Sec61b (SEC61 translocon subunit beta) - Rat Genome Database

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Gene: Sec61b (SEC61 translocon subunit beta) Rattus norvegicus
Analyze
Symbol: Sec61b
Name: SEC61 translocon subunit beta
RGD ID: 1304997
Description: Predicted to enable epidermal growth factor binding activity; guanyl-nucleotide exchange factor activity; and ribosome binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation; post-translational protein targeting to membrane, translocation; and retrograde protein transport, ER to cytosol. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum quality control compartment. Predicted to be part of Sec61 translocon complex. Predicted to be active in membrane. Orthologous to human SEC61B (SEC61 translocon subunit beta); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; phagocytosis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298068; protein transport protein Sec61 subunit beta; Sec61 beta subunit; Sec61 translocon beta subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8566,569,184 - 66,577,394 (+)NCBIGRCr8
mRatBN7.2561,773,594 - 61,781,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl561,773,594 - 61,781,804 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx563,745,475 - 63,753,662 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0565,564,777 - 65,572,964 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0565,534,249 - 65,542,436 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0563,192,322 - 63,200,532 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,192,298 - 63,200,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0567,711,881 - 67,720,091 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,096,869 - 64,105,082 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1564,101,911 - 64,110,117 (+)NCBI
Celera565,811,176 - 65,819,388 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
benzatropine  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
deoxynivalenol  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
glafenine  (EXP)
inulin  (ISO)
ivermectin  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
propiconazole  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloroethene  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The Sec61 complex is located in both the ER and the ER-Golgi intermediate compartment. Greenfield JJ and High S, J Cell Sci 1999 May;112 ( Pt 10):1477-86.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8945469   PMID:11408579   PMID:12477932   PMID:16705175   PMID:17215517   PMID:18555783   PMID:19602593   PMID:22375059   PMID:22658674   PMID:23093945   PMID:23439682   PMID:27044890  
PMID:31505169  


Genomics

Comparative Map Data
Sec61b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8566,569,184 - 66,577,394 (+)NCBIGRCr8
mRatBN7.2561,773,594 - 61,781,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl561,773,594 - 61,781,804 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx563,745,475 - 63,753,662 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0565,564,777 - 65,572,964 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0565,534,249 - 65,542,436 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0563,192,322 - 63,200,532 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,192,298 - 63,200,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0567,711,881 - 67,720,091 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,096,869 - 64,105,082 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1564,101,911 - 64,110,117 (+)NCBI
Celera565,811,176 - 65,819,388 (-)NCBICelera
Cytogenetic Map5q22NCBI
SEC61B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38999,222,282 - 99,230,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl999,222,064 - 99,230,615 (+)EnsemblGRCh38hg38GRCh38
GRCh379101,984,564 - 101,992,897 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369101,024,391 - 101,032,722 (+)NCBINCBI36Build 36hg18NCBI36
Build 34999,064,124 - 99,072,455NCBI
Celera972,498,433 - 72,506,764 (+)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef971,583,219 - 71,591,550 (+)NCBIHuRef
CHM1_19102,131,019 - 102,139,349 (+)NCBICHM1_1
T2T-CHM13v2.09111,393,986 - 111,402,319 (+)NCBIT2T-CHM13v2.0
Sec61b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39447,474,661 - 47,483,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl447,474,658 - 47,483,242 (+)EnsemblGRCm39 Ensembl
GRCm38447,474,661 - 47,483,233 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl447,474,658 - 47,483,242 (+)EnsemblGRCm38mm10GRCm38
MGSCv37447,487,533 - 47,496,105 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36447,495,761 - 47,504,333 (+)NCBIMGSCv36mm8
Celera447,497,246 - 47,505,818 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.03NCBI
Sec61b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541926,410,911 - 26,423,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541926,414,891 - 26,423,260 (-)NCBIChiLan1.0ChiLan1.0
SEC61B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21140,227,057 - 40,235,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1940,229,432 - 40,237,799 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0970,312,061 - 70,320,448 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1998,430,774 - 98,439,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl998,431,059 - 98,438,914 (+)Ensemblpanpan1.1panPan2
SEC61B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11156,279,564 - 56,298,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1156,251,636 - 56,286,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1154,710,432 - 54,716,934 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01157,387,547 - 57,394,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1157,359,606 - 57,407,112 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11155,892,012 - 55,898,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01155,916,992 - 55,923,491 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01156,616,366 - 56,622,875 (+)NCBIUU_Cfam_GSD_1.0
Sec61b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947171,183,406 - 171,191,834 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365247,731,058 - 7,740,310 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365247,731,033 - 7,739,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC61B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,985,162 - 240,992,976 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,985,173 - 240,991,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21269,216,031 - 269,222,679 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC61B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11240,194,243 - 40,202,474 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1240,194,301 - 40,202,441 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660352,327,848 - 2,336,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec61b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248251,762,734 - 1,771,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248251,762,735 - 1,771,271 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sec61b
77 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:122
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000008329
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000008329   ⟹   ENSRNOP00000008329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl561,773,594 - 61,781,804 (+)Ensembl
Rnor_6.0 Ensembl563,192,298 - 63,200,508 (+)Ensembl
RefSeq Acc Id: NM_001106654   ⟹   NP_001100124
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8566,569,184 - 66,577,394 (+)NCBI
mRatBN7.2561,773,594 - 61,781,804 (+)NCBI
Rnor_6.0563,192,322 - 63,200,532 (+)NCBI
Rnor_5.0567,711,881 - 67,720,091 (+)NCBI
RGSC_v3.4564,096,869 - 64,105,082 (+)RGD
Celera565,811,176 - 65,819,388 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100124 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67110 (Get FASTA)   NCBI Sequence Viewer  
  EDL78204 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008329.4
RefSeq Acc Id: NP_001100124   ⟸   NM_001106654
- UniProtKB: B2RZD1 (UniProtKB/TrEMBL),   F7F271 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008329   ⟸   ENSRNOT00000008329

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZD1-F1-model_v2 AlphaFold B2RZD1 1-96 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693722
Promoter ID:EPDNEW_R4246
Type:initiation region
Name:Sec61b_1
Description:Sec61 translocon beta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0563,192,334 - 63,192,394EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304997 AgrOrtholog
BioCyc Gene G2FUF-41377 BioCyc
Ensembl Genes ENSRNOG00000006345 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008329.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6887572 IMAGE-MGC_LOAD
InterPro Sec61-beta/Sbh UniProtKB/TrEMBL
  Sec61_beta_euk UniProtKB/TrEMBL
KEGG Report rno:298068 UniProtKB/TrEMBL
MGC_CLONE MGC:189573 IMAGE-MGC_LOAD
NCBI Gene 298068 ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA UniProtKB/TrEMBL
  PTHR13509 UniProtKB/TrEMBL
Pfam Sec61_beta UniProtKB/TrEMBL
PhenoGen Sec61b PhenoGen
PIRSF Sec61_beta_euk UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006345 RatGTEx
UniProt B2RZD1 ENTREZGENE, UniProtKB/TrEMBL
  F7F271 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Sec61b  SEC61 translocon subunit beta  Sec61b  Sec61 translocon beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-11 Sec61b  Sec61 translocon beta subunit  Sec61b  Sec61 beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sec61b  Sec61 beta subunit   Sec61b_predicted  Sec61 beta subunit (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sec61b_predicted  Sec61 beta subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED