Ugcg (UDP-glucose ceramide glucosyltransferase) - Rat Genome Database

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Gene: Ugcg (UDP-glucose ceramide glucosyltransferase) Rattus norvegicus
Analyze
Symbol: Ugcg
Name: UDP-glucose ceramide glucosyltransferase
RGD ID: 621870
Description: Enables ceramide glucosyltransferase activity. Predicted to be involved in several processes, including cornified envelope assembly; establishment of skin barrier; and glucosylceramide biosynthetic process. Located in Golgi membrane. Biomarker of hypertension. Orthologous to human UGCG (UDP-glucose ceramide glucosyltransferase); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ceramide glucosyltransferase; GCS; GLCT-1; glucosylceramide synthase; glycosylceramide synthase; UDP-glucose:ceramide glycosyltransferase; UDP-glucose:N-acylsphingosine D-glucosyltransferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,828,006 - 78,860,725 (+)NCBIGRCr8
mRatBN7.2574,032,978 - 74,065,701 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,032,978 - 74,065,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,934,197 - 75,966,827 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0577,755,827 - 77,788,455 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0577,727,974 - 77,760,604 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,376,722 - 76,419,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,386,836 - 76,419,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,530,140 - 80,562,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,263,334 - 77,295,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,268,446 - 77,300,599 (+)NCBI
Celera572,854,114 - 72,886,901 (+)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
bucladesine  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
chloroprene  (ISO)
chromium atom  (ISO)
ciguatoxin CTX1B  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzo[a,l]pyrene  (EXP)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
flavonoids  (EXP)
fluoranthene  (EXP,ISO)
fumonisin B1  (ISO)
geldanamycin  (ISO)
heroin  (ISO)
hexadecanoic acid  (ISO)
hydroquinone  (ISO)
hypochlorous acid  (ISO)
indometacin  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lithium atom  (ISO)
lithium chloride  (ISO)
lithium hydride  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
menadione  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP,ISO)
methylmercury chloride  (ISO)
miglustat  (ISO)
mocetinostat  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
oleic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenol  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tacedinaline  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
tetracycline  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IEA)
Golgi membrane  (IDA,IEA,ISO)
membrane  (IBA,IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Oligomerization and topology of the Golgi membrane protein glucosylceramide synthase. Marks DL, etal., J Biol Chem. 1999 Jan 1;274(1):451-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Diet-relevant phytochemical intake affects the cardiac AhR and nrf2 transcriptome and reduces heart failure in hypertensive rats. Seymour EM, etal., J Nutr Biochem. 2013 Sep;24(9):1580-6. doi: 10.1016/j.jnutbio.2013.01.008. Epub 2013 Mar 22.
10. Histidine-193 of rat glucosylceramide synthase resides in a UDP-glucose- and inhibitor (D-threo-1-phenyl-2-decanoylamino-3-morpholinopropan-1-ol)-binding region: a biochemical and mutational study. Wu K, etal., Biochem J 1999 Jul 15;341 ( Pt 2):395-400.
Additional References at PubMed
PMID:8643456   PMID:10430909   PMID:12873973   PMID:15181369   PMID:16109770   PMID:17145749   PMID:21270676   PMID:22851168   PMID:23554574   PMID:23748427   PMID:24270810  


Genomics

Comparative Map Data
Ugcg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,828,006 - 78,860,725 (+)NCBIGRCr8
mRatBN7.2574,032,978 - 74,065,701 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,032,978 - 74,065,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,934,197 - 75,966,827 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0577,755,827 - 77,788,455 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0577,727,974 - 77,760,604 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0576,376,722 - 76,419,564 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,386,836 - 76,419,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,530,140 - 80,562,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,263,334 - 77,295,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,268,446 - 77,300,599 (+)NCBI
Celera572,854,114 - 72,886,901 (+)NCBICelera
Cytogenetic Map5q24NCBI
UGCG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389111,896,814 - 111,935,369 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9111,896,814 - 111,935,369 (+)EnsemblGRCh38hg38GRCh38
GRCh379114,659,094 - 114,697,649 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,699,027 - 113,735,260 (+)NCBINCBI36Build 36hg18NCBI36
Build 349111,738,760 - 111,774,986NCBI
Celera985,158,191 - 85,194,369 (+)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef984,257,257 - 84,293,341 (+)NCBIHuRef
CHM1_19114,805,585 - 114,841,763 (+)NCBICHM1_1
T2T-CHM13v2.09124,068,161 - 124,106,716 (+)NCBIT2T-CHM13v2.0
Ugcg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,189,452 - 59,222,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,189,257 - 59,222,833 (+)EnsemblGRCm39 Ensembl
GRCm38459,189,507 - 59,222,833 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,189,257 - 59,222,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv37459,202,422 - 59,235,705 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,283,604 - 59,316,887 (+)NCBIMGSCv36mm8
Celera459,098,657 - 59,131,595 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.44NCBI
Ugcg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,416,796 - 15,451,936 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,417,468 - 15,451,936 (-)NCBIChiLan1.0ChiLan1.0
UGCG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,497,888 - 27,536,068 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,500,250 - 27,538,411 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0983,024,602 - 83,065,017 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19111,184,478 - 111,222,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9111,184,478 - 111,222,613 (+)Ensemblpanpan1.1panPan2
UGCG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,439,346 - 66,472,897 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,439,346 - 66,472,897 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,850,055 - 64,883,620 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,574,649 - 67,608,141 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,574,695 - 67,610,200 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,089,963 - 66,123,510 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,113,247 - 66,146,779 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,803,569 - 66,837,122 (+)NCBIUU_Cfam_GSD_1.0
Ugcg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,753,275 - 181,790,956 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,475,592 - 1,513,273 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,475,684 - 1,513,273 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UGCG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,651,879 - 252,688,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,651,850 - 252,690,817 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,440,499 - 283,479,445 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UGCG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,575,519 - 27,614,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1227,574,970 - 27,613,811 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603515,167,285 - 15,205,882 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ugcg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476023,056,929 - 23,094,010 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476023,059,141 - 23,094,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ugcg
192 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:170
Interacting mature miRNAs:224
Transcripts:ENSRNOT00000021110
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat

Markers in Region
D5Rat75  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8578,853,664 - 78,853,902 (+)Marker Load Pipeline
mRatBN7.2574,058,640 - 74,058,878 (+)MAPPERmRatBN7.2
Rnor_6.0576,412,496 - 76,412,733NCBIRnor6.0
Rnor_5.0580,555,798 - 80,556,035UniSTSRnor5.0
RGSC_v3.4577,288,958 - 77,289,350RGDRGSC3.4
RGSC_v3.4577,288,992 - 77,289,229UniSTSRGSC3.4
RGSC_v3.1577,294,105 - 77,294,342RGD
Celera572,879,745 - 72,879,982UniSTS
RH 3.4 Map5514.4UniSTS
RH 3.4 Map5514.4RGD
RH 2.0 Map5395.3RGD
SHRSP x BN Map543.4999RGD
Cytogenetic Map5q24UniSTS
D5Uwm68  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,047,272 - 74,047,522 (+)MAPPERmRatBN7.2
Rnor_6.0576,401,130 - 76,401,379NCBIRnor6.0
Rnor_5.0580,544,432 - 80,544,681UniSTSRnor5.0
RGSC_v3.4577,277,626 - 77,277,875UniSTSRGSC3.4
Celera572,868,397 - 72,868,628UniSTS
Cytogenetic Map5q24UniSTS
D5Wox42  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,063,388 - 74,063,576 (+)MAPPERmRatBN7.2
Rnor_6.0576,417,248 - 76,417,435NCBIRnor6.0
Rnor_5.0580,560,300 - 80,560,487UniSTSRnor5.0
RGSC_v3.4577,293,482 - 77,293,669UniSTSRGSC3.4
Celera572,884,597 - 72,884,776UniSTS
Cytogenetic Map5q24UniSTS
RH133596  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,065,361 - 74,065,554 (+)MAPPERmRatBN7.2
Rnor_6.0576,419,221 - 76,419,413NCBIRnor6.0
Rnor_5.0580,562,273 - 80,562,465UniSTSRnor5.0
RGSC_v3.4577,295,455 - 77,295,647UniSTSRGSC3.4
Celera572,886,562 - 72,886,754UniSTS
RH 3.4 Map5514.4UniSTS
Cytogenetic Map5q24UniSTS
RH135237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2574,063,033 - 74,063,233 (+)MAPPERmRatBN7.2
Rnor_6.0576,416,893 - 76,417,092NCBIRnor6.0
Rnor_5.0580,559,945 - 80,560,144UniSTSRnor5.0
RGSC_v3.4577,293,127 - 77,293,326UniSTSRGSC3.4
Celera572,884,242 - 72,884,441UniSTS
RH 3.4 Map5516.6UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000021110   ⟹   ENSRNOP00000021110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl576,386,838 - 76,419,560 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088872   ⟹   ENSRNOP00000075148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,032,978 - 74,065,393 (+)Ensembl
Rnor_6.0 Ensembl576,386,836 - 76,419,252 (+)Ensembl
RefSeq Acc Id: NM_031795   ⟹   NP_113983
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8578,828,006 - 78,860,725 (+)NCBI
mRatBN7.2574,032,978 - 74,065,701 (+)NCBI
Rnor_6.0576,386,838 - 76,419,560 (+)NCBI
Rnor_5.0580,530,140 - 80,562,612 (+)NCBI
RGSC_v3.4577,263,334 - 77,295,794 (+)RGD
Celera572,854,114 - 72,886,901 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_113983 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD02464 (Get FASTA)   NCBI Sequence Viewer  
  CAA11853 (Get FASTA)   NCBI Sequence Viewer  
  EDL91642 (Get FASTA)   NCBI Sequence Viewer  
  EDL91643 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075148
  ENSRNOP00000075148.1
GenBank Protein Q9R0E0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113983   ⟸   NM_031795
- UniProtKB: O55149 (UniProtKB/Swiss-Prot),   Q9R0E0 (UniProtKB/Swiss-Prot),   A6KDW2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021110   ⟸   ENSRNOT00000021110
Ensembl Acc Id: ENSRNOP00000075148   ⟸   ENSRNOT00000088872

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0E0-F1-model_v2 AlphaFold Q9R0E0 1-394 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621870 AgrOrtholog
BioCyc Gene G2FUF-41156 BioCyc
BioCyc Pathway PWY-7836 [ganglio-series glycosphingolipids biosynthesis] BioCyc
  PWY-7838 [globo-series glycosphingolipids biosynthesis] BioCyc
  PWY-7839 [lacto-series glycosphingolipids biosynthesis] BioCyc
  PWY-7841 [neolacto-series glycosphingolipids biosynthesis] BioCyc
BioCyc Pathway Image PWY-7836 BioCyc
  PWY-7838 BioCyc
  PWY-7839 BioCyc
  PWY-7841 BioCyc
Ensembl Genes ENSRNOG00000015644 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000088872 ENTREZGENE
  ENSRNOT00000088872.2 UniProtKB/Swiss-Prot
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ceramide_glucosylTrfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83626 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 83626 ENTREZGENE
PANTHER CERAMIDE GLUCOSYLTRANSFERASE UniProtKB/Swiss-Prot
  CERAMIDE GLUCOSYLTRANSFERASE UniProtKB/TrEMBL
  CERAMIDE GLUCOSYLTRANSFERASE UniProtKB/TrEMBL
  PTHR12726 UniProtKB/Swiss-Prot
Pfam Glyco_transf_21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ugcg PhenoGen
RatGTEx ENSRNOG00000015644 RatGTEx
Superfamily-SCOP Nucleotide-diphospho-sugar transferases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6KDW2 ENTREZGENE, UniProtKB/TrEMBL
  CEGT_RAT UniProtKB/Swiss-Prot
  O55149 ENTREZGENE
  Q9R0E0 ENTREZGENE
UniProt Secondary O55149 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Ugcg  UDP-glucose ceramide glucosyltransferase    UDP-glucose:ceramide glycosyltransferase  Name updated 1299863 APPROVED
2002-08-07 Ugcg  UDP-glucose:ceramide glycosyltransferase      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_regulation inhibited by histidine-modifying reagent DEPC 634250