Rps13l1 (ribosomal protein S13 like 1) - Rat Genome Database

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Gene: Rps13l1 (ribosomal protein S13 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps13l1 (Ensembl: LOC683961)
Name: ribosomal protein S13 like 1 (Ensembl:similar to ribosomal protein S13)
RGD ID: 1596535
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S13-like; AABR07048031.1; LOC683961; similar to ribosomal protein S13; small ribosomal subunit protein uS15-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,253,046 - 61,253,614 (+)NCBIGRCr8
mRatBN7.2556,457,121 - 56,457,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,457,124 - 56,457,669 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,652,412 - 57,658,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,657,909 - 57,658,376 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0562,180,028 - 62,180,555 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera555,048,972 - 55,054,981 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps13l1
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000073017   ⟹   ENSRNOP00000067470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,457,124 - 56,457,669 (+)Ensembl
RefSeq Acc Id: XM_003749925   ⟹   XP_003749973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,253,046 - 61,253,614 (+)NCBI
mRatBN7.2556,457,121 - 56,457,669 (+)NCBI
Rnor_6.0557,652,412 - 57,658,436 (+)NCBI
Rnor_5.0562,180,028 - 62,180,555 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003749973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000036690.2
  ENSRNOP00000067470.1
RefSeq Acc Id: XP_003749973   ⟸   XM_003749925
- UniProtKB: M0RCY2 (UniProtKB/TrEMBL),   A0A8L2QJT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000067470   ⟸   ENSRNOT00000073017
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCY2-F1-model_v2 AlphaFold M0RCY2 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596535 AgrOrtholog
BioCyc Gene G2FUF-41567 BioCyc
Ensembl Genes ENSRNOG00000038746 UniProtKB/TrEMBL
  ENSRNOG00000048698 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034694.3 UniProtKB/TrEMBL
  ENSRNOT00000073017.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.860.130 UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/TrEMBL
InterPro Ribosomal_S13/S15_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
  Ribosomal_S15P UniProtKB/TrEMBL
  S15_NS1_RNA-bd UniProtKB/TrEMBL
NCBI Gene 683961 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S13 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S13 UniProtKB/TrEMBL
  PTHR11885 UniProtKB/TrEMBL
Pfam Ribosomal_S13_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
PhenoGen Rps13l1 PhenoGen
PROSITE RIBOSOMAL_S15 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038746 RatGTEx
  ENSRNOG00000048698 RatGTEx
SMART Ribosomal_S13_N UniProtKB/TrEMBL
  Ribosomal_S15 UniProtKB/TrEMBL
Superfamily-SCOP SSF47060 UniProtKB/TrEMBL
UniProt A0A8L2QJT9 ENTREZGENE, UniProtKB/TrEMBL
  M0RCY2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps13l1  ribosomal protein S13 like 1  LOC683961  similar to ribosomal protein S13  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC683961  similar to ribosomal protein S13  AABR07048031.1    Data merged from RGD:15005586 737654 PROVISIONAL
2019-11-08 AABR07048031.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2006-11-20 LOC683961  similar to ribosomal protein S13      Symbol and Name status set to provisional 70820 PROVISIONAL