Ctnnal1 (catenin alpha-like 1) - Rat Genome Database

Name: Ctnnal1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ctnnal1 (catenin alpha-like 1) Rattus norvegicus

Analyze

Symbol:

Ctnnal1

Name:

catenin alpha-like 1

RGD ID:

1311434

Description:

Predicted to enable actin filament binding activity and cadherin binding activity. Predicted to be involved in Rho protein signal transduction. Predicted to be located in cytosol. Orthologous to human CTNNAL1 (catenin alpha like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alpha-catulin; catenin (cadherin associated protein), alpha-like 1; Catnal1; LOC298019

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTNNAL1 (catenin alpha like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ctnnal1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctnnal1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTNNAL1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTNNAL1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctnnal1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTNNAL1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTNNAL1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctnnal1 (catenin alpha like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CTNNAL1 (catenin alpha like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ctnnal1 (catenin alpha like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ctnnal1 (catenin (cadherin-associated protein), alpha-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	alpha-Catr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ctn-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctnnal1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	71,514,340 - 71,569,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	71,514,340 - 71,569,431 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	73,401,840 - 73,457,828 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	75,233,281 - 75,289,233 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	75,205,357 - 75,261,311 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	73,561,249 - 73,621,070 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	73,561,450 - 73,621,070 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	77,719,359 - 77,778,979 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	74,716,087 - 74,771,424 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	74,722,450 - 74,776,428 (-)	NCBI
Celera	5	70,368,361 - 70,423,528 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 37 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antimycin A (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-carotene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

chlorohydrocarbon (EXP)

chlorpyrifos (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deguelin (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

diuron (EXP)

endosulfan (EXP)

Enterolactone (ISO)

fenpyroximate (ISO)

fenthion (ISO)

fulvestrant (ISO)

glyphosate (EXP)

imidacloprid (EXP)

isoprenaline (ISO)

kojic acid (ISO)

methapyrilene (ISO)

methimazole (EXP)

methylmercury chloride (EXP)

mifepristone (ISO)

morphine (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

nitrofen (EXP)

oxaliplatin (EXP)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium dichromate (ISO)

propiconazole (EXP)

pyrogallol (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

simvastatin (ISO)

sodium arsenate (ISO)

sulfadimethoxine (EXP)

tamibarotene (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thiabendazole (EXP)

titanium dioxide (ISO)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

Rho protein signal transduction (IBA,ISO)

Cellular Component

cell-cell junction (IEA)

cytosol (ISO)

Molecular Function

actin filament binding (IEA)

cadherin binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12270917	PMID:25931508

Genomics

Comparative Map Data

Ctnnal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	71,514,340 - 71,569,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	71,514,340 - 71,569,431 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	73,401,840 - 73,457,828 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	75,233,281 - 75,289,233 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	75,205,357 - 75,261,311 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	73,561,249 - 73,621,070 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	73,561,450 - 73,621,070 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	77,719,359 - 77,778,979 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	74,716,087 - 74,771,424 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	74,722,450 - 74,776,428 (-)	NCBI
Celera	5	70,368,361 - 70,423,528 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

CTNNAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	108,942,577 - 109,013,499 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	108,942,569 - 109,013,522 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	111,704,857 - 111,775,779 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	110,744,672 - 110,815,585 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	108,784,405 - 108,855,319	NCBI
Celera	9	82,204,052 - 82,274,963 (-)	NCBI		Celera
Cytogenetic Map	9	q31.3	NCBI
HuRef	9	81,304,501 - 81,375,525 (-)	NCBI		HuRef
CHM1_1	9	111,851,370 - 111,922,259 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	121,111,650 - 121,182,574 (-)	NCBI		T2T-CHM13v2.0

Ctnnal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	56,810,935 - 56,865,370 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	56,810,935 - 56,865,188 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	56,810,935 - 56,865,375 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	56,810,935 - 56,865,188 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	56,823,807 - 56,878,083 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	56,904,989 - 56,959,242 (-)	NCBI		MGSCv36	mm8
Celera	4	56,718,828 - 56,772,958 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	31.66	NCBI

Ctnnal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	17,978,233 - 18,027,257 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	17,975,242 - 18,028,100 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTNNAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	30,398,686 - 30,469,683 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	80,093,492 - 80,164,461 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	108,266,635 - 108,323,601 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CTNNAL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	64,101,917 - 64,160,787 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	64,102,703 - 64,155,981 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	62,504,588 - 62,564,699 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	65,236,749 - 65,296,945 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	65,236,053 - 65,296,934 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	63,757,672 - 63,817,781 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	63,776,845 - 63,839,728 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	64,469,473 - 64,529,559 (-)	NCBI		UU_Cfam_GSD_1.0

Ctnnal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	179,349,765 - 179,395,756 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	3,870,836 - 3,915,861 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936559	3,869,396 - 3,916,772 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTNNAL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	250,005,449 - 250,182,020 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	250,005,444 - 250,078,448 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	280,535,894 - 280,609,008 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTNNAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	30,540,859 - 30,612,233 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	30,540,977 - 30,603,357 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	12,071,875 - 12,143,458 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctnnal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	2,504,371 - 2,567,400 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	2,504,277 - 2,568,135 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctnnal1
293 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	513
Count of miRNA genes:	267
Interacting mature miRNAs:	320
Transcripts:	ENSRNOT00000014888
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat

Markers in Region

RH131123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,571,039 - 71,571,235 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,909,120 - 73,909,315	NCBI	Rnor6.0
Rnor_5.0	5	78,064,371 - 78,064,566	UniSTS	Rnor5.0
RGSC_v3.4	5	74,773,032 - 74,773,227	UniSTS	RGSC3.4
Celera	5	70,425,137 - 70,425,332	UniSTS
RH 3.4 Map	5	483.7	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH132548

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,514,964 - 71,515,173 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,562,075 - 73,562,283	NCBI	Rnor6.0
Rnor_5.0	5	77,719,984 - 77,720,192	UniSTS	Rnor5.0
RGSC_v3.4	5	74,716,712 - 74,716,920	UniSTS	RGSC3.4
Celera	5	70,368,986 - 70,369,194	UniSTS
RH 3.4 Map	5	479.5	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH144545

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,570,602 - 71,570,772 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,908,683 - 73,908,852	NCBI	Rnor6.0
Rnor_5.0	5	78,063,934 - 78,064,103	UniSTS	Rnor5.0
RGSC_v3.4	5	74,772,595 - 74,772,764	UniSTS	RGSC3.4
Celera	5	70,424,700 - 70,424,869	UniSTS
RH 3.4 Map	5	484.8	UniSTS
Cytogenetic Map	5	q24	UniSTS

BE121176

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,562,349 - 71,562,526 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,611,178 - 73,611,354	NCBI	Rnor6.0
Rnor_6.0	5	73,901,552 - 73,901,728	NCBI	Rnor6.0
Rnor_5.0	5	78,056,803 - 78,056,979	UniSTS	Rnor5.0
Rnor_5.0	5	77,769,087 - 77,769,263	UniSTS	Rnor5.0
RGSC_v3.4	5	74,764,077 - 74,764,253	UniSTS	RGSC3.4
Celera	5	70,416,400 - 70,416,576	UniSTS
RH 3.4 Map	5	484.8	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH141410

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,518,916 - 71,519,111 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,566,028 - 73,566,222	NCBI	Rnor6.0
Rnor_5.0	5	77,723,937 - 77,724,131	UniSTS	Rnor5.0
RGSC_v3.4	5	74,720,665 - 74,720,859	UniSTS	RGSC3.4
Celera	5	70,372,942 - 70,373,136	UniSTS
RH 3.4 Map	5	481.6	UniSTS
Cytogenetic Map	5	q24	UniSTS

BQ211407

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	71,528,082 - 71,528,268 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	73,575,194 - 73,575,379	NCBI	Rnor6.0
Rnor_5.0	5	77,733,103 - 77,733,288	UniSTS	Rnor5.0
RGSC_v3.4	5	74,729,831 - 74,730,016	UniSTS	RGSC3.4
Celera	5	70,382,108 - 70,382,293	UniSTS
RH 3.4 Map	5	482.9	UniSTS
Cytogenetic Map	5	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	36	22	19	22	2	2	74	35	41	11	2
Low			21	19		19	6	9					6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014888 ⟹ ENSRNOP00000014888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	71,514,340 - 71,569,431 (-)	Ensembl
Rnor_6.0 Ensembl	5	73,561,450 - 73,621,070 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101845 ⟹ ENSRNOP00000087173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	71,514,340 - 71,552,696 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106413 ⟹ ENSRNOP00000077198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	71,514,340 - 71,561,301 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107280 ⟹ ENSRNOP00000077208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	71,541,974 - 71,569,431 (-)	Ensembl

RefSeq Acc Id:

NM_001106649 ⟹ NP_001100119

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	71,514,340 - 71,569,431 (-)	NCBI
Rnor_6.0	5	73,561,450 - 73,621,070 (-)	NCBI
Rnor_5.0	5	77,719,359 - 77,778,979 (-)	NCBI
RGSC_v3.4	5	74,716,087 - 74,771,424 (-)	RGD
Celera	5	70,368,361 - 70,423,528 (-)	RGD

Sequence:

show sequence

CACAAGGGTAGGGGTGGGGCCTCGGTGCAGCGAGGCGGCAGGCAACCGGGAGGCTGGTTGGCGG
GCGGGCAGAGGTGCGGATAGCGCGCTCTACTATCGGTGGCGGGCCATGGCCACTTCTACAGCCC
CCGGTGGTGGCGGTGCGGGAGCTGTCCACTCCTCCAATGCTTCTGGCCTCGCCTTCGACTCGGG
ACTGGAGATTAGAACGCGCTCGGTAGAGCAAACTCTTCTGCCCCTGGTTTCTCAGATTACCACA
CTTATTAACCATAAAGATAATACCAAAAAGTCTGATAAGACTCTGCAAGCGATTCAGCGCGTGG
GACAAGCTGTCAACTTGGCAGTTGGAAGATTTGTTAAAGTAGGGGAAGCTATAGCCAATGAAAA
CTGGGATTTGAAAGAAGAAATTAGTATTGCCTGCATCGAAGCTAAACAAGCAGGAGAAACAATC
GCCTCCCTCACAGATGTGACCAAATGGAACCATTTGGAGTCAGATGGTCAGGTCACAATTCTGA
CAGACAAAACAGGAGTCGTGCAGGCGGCCAGACTGCTGCTCTCCTCAGTGACAAAAGTGTTGCT
GCTGGCAGATCAGGTAGTCATCAAGCAAATAGTGACATCGAGAAACAAGGTTCTTGCAACCATG
GAAAGGCTAGAGAGAGTAAACAGCTTTCAGGAGTTTGTTCAGATATTCAGCCAGTTTGGAAACG
AAATGGTGGAGTTTGCATACCTAACGGGAGACAGACAAAATGATTTGAAAGATGAGAAGAAAAA
GGCCAGAATGGCTGTGGCGAGGGCAGTGCTTGAGAAGGGCACAATGATGCTCCTCACAGCCTCA
AAGACGTGTCTCAGGCACCCCAGCTGTGAGTCAGCCCATAAAAACAAAGAAGGAGTGTTTGATC
GGATGAGAGCAGCCCTGGAGAAGGTCATCGAGATCGTGACTGACTGCAGACTCAACAGAGACAC
CGACAGCTCATCTGTCAGCATTTTTACTGGTATTAAAGAGTTGAAGTTGAATATGGAAGCTCTT
CGGGAGAATGTTTACTTCGAGTCCAAGGAGAACCTTTCTGCCGCATTGGAGGTCATCTTGGAGC
GTGTGGAGGACTTCACCGATTCTGCCTACACCAGCCATGAGCACAGGGAACGCATCTTGGAACT
GTCTGCGCAGGCGAGGACAGAAGTGCAGCAGTTCATTTCCGTGTGGATGCAAGCTCAAAGCAGG
AAGACAAAGAGCGCGGCCGAGGAGCTGGAACTCACTGTGCTGAAGGTCAGCCACAGCCTGGACG
AGCTGAGGAAAGAACTCCATTGTACAGCCATGCAGCTGGCAGCCGACCTGTTAAAATTCCATGC
CGATCATGTGGTTTTAAAAGCATTAAAAGTTACTGGAGTAGAAGGAAATTTAGAAGCTTTGGCT
GAGTATGCCTGTAAACTCTCTGAGCAGAAAGAACAGCTTGTTGAGACATGTCGACTGTTGCGGC
ATGTATCCGGCACAGAACCCCTCGAGATAACGTGCATGCATGCAGAGGAGACATTCCAGGTGAC
TGGCCAACAGATCATTTCTGCTGCTGAAACCCTGACGTTGCATCCGTCTAGCAAAATCGCTAAA
GAAAACCTGGATGTGTTTTGTGAAGCGTGGGAGTCTCAGATTAGTGATCTGGCAACGCTGCTAA
GAGAGATCAGTGATGTGTTTGAAGGACGACGAGGAGAGAAGTATGACCATCTTTCACTTCCAAA
GCCCATGAAAAATAATGCAAACCTGAAATCAGTGAAGTCTGACAAACCTGATTCAGAGGAGCAA
GCCAAGATAGCCAAGCTTGGGCTGAAGCTGGGATTGCTTTCCTCCGATGCTGACTGTGAAATCG
AGAAATGGGAAGATGACGACAACGAGATCGTTCGACATGGACGGAATATGTCCAGGATGGCCTA
TTCTCTGTATTTATTTACTAGAGGAGAGGGGCCACTGAAAACTTCCCAGGACTTAATTCACTTC
CTGGAGGTTTTTGCTACAGAGGGATTAAAGCTTACTTCAAGCATACAGTCTTTTTCAAAACAGC
TAAAAGATGATGACAAACTTATGCTTCTCCTGGAAATAAACAAACTAATTCCTCTATGCCACCA
GCTTCAGACAATAACCAAGACATCTTTGCAGAGTAAAGTGTTTCTGAAGGTTGACAAGTGTGTT
ACAAAGATAAGATCCATGATGACTCTCGTGGTCCAGCTCCTCTCCCTTTGCTATAAGCTACTGA
AAAAGATGGGAAATGACAGATGGGTCTCTGCGACAAACAAAGATGCCATGGATGGTCAAACCTG
AGCAGCCTGGGGTTCGTCTCTGGAATACCATGTGGTACAGCTGACATTTTAAAAAGCAAATGAT
CCTTTGTACTTTCATAAGTTCATCAGTCTTTAAAAGAGGATGCTGAAATCTTTCTTTTCTCTGA
TCTTCAGATTAGACATGCACGTTGCTATGGTGGTTGCTAAGATTCTAACGGCAGTACAGTTGGA
AAACAGACACTGAGCTCAGGTGTTCTTTAGCACACACCAAATATCCCAAGGGTCTTAATGGCAG
CTGAATTCCAAAGAAGCAATTGCAAATGCACATCCCCCAGCCCCATCGGCTTCCTTAACTGGTT
TTTAAGCTGATTATCTACAACACTAATTTCAGCAGAAAGCAGTGGCCTTGTTGAATGCAGGGTT
TTCTTAGGCCTGGGGACTCTTCTTCAGTTCTTGTTGAAGCAGGATAAGGGTCCCTCAGAGCCTG
GTCCCAGATCACACCTGCTAGCACTGTTGCTTCTAATAAGTATCTCACCGGATAAGGTTGTTAG
GCTGCAACAGGAGTCACTCCAAAGAACCCTGGAGCAACTTCAGAGGAGGAGATGGTTTTTATTT
TAGCTGTAGTATGCGTAGCTGACCAGGCAGTCCTGAGTAATGGATGGAATCCTAAGTATTTCTT
ACTGGTTTAATAACACTTCAGAACTATCCTCAGTATTGATGAAATGACAGTTGCAGACGATAGA
ACATTGGAACCAAGAGGCTGTGTAGATCCCAGATACCTGTATGCTGTATTTCATGTATGTGGAA
TGGAATGCTCATTATACAATAAATATTTTTAGTCTTTTTAACTTTAGGGTTTAGACCTTTTCTT
GGGCTGGGGAAACAACTCTGCCAGTAACCTGTTTGCCTTGTAAGCTGTGTAATAAAGCAAGGAA
AAGGTTGCCCAGGAGATCACCCAGCTGATCTGCTAGACTGTAGAGTATGAGAACAGGGCCGAGT
GAGGGAGCGTGTGCAGTACCAGCGTGTAGAGCTCTCACACCTTTAGCTACCATCAGATGCCGAC
ATAACCAGTCTGTCAATGGTATAATCTTGCAGGTAGCTTTACAGGGAATGATTGAGTGGAACCA
TCTTCAGTGAAATAGACAGGATTGGTACTAACGTGTGAGTGAAAATTCTGTGATTTCTTTTTAA
ACTGAGAAGCAGAATGCTAACTTCACTGGATTCTCAGTGTTAATAATTTAGTAATAAAGCAGCT
CCCTCACCAGATATATGGCAACAATACCATTATCTTTAACAACAAAATAGGTGTATTAGTATTA
AACATCATGGGATAATGTACACGTCAATAAAAACTGCACATTCAAACTGAATTCATACT

hide sequence

RefSeq Acc Id:

XM_006238177 ⟹ XP_006238239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	71,514,870 - 71,562,590 (-)	NCBI
Rnor_6.0	5	73,561,249 - 73,610,145 (-)	NCBI
Rnor_5.0	5	77,719,359 - 77,778,979 (-)	NCBI

Sequence:

show sequence

CGCCTGCCCCGCCCCCCCCAGTACCTTCTTTGCCCTCTGGTTCTTTCAGGCATTTCCTAGGACG
TGCTGTAGATATGTCTGTTGGGACAACTATTACCACACTTATTAACCATAAAGATAATACCAAA
AAGTCTGATAAGACTCTGCAAGCGATTCAGCGCGTGGGACAAGCTGTCAACTTGGCAGTTGGAA
GATTTGTTAAAGTAGGGGAAGCTATAGCCAATGAAAACTGGGATTTGAAAGAAGAAATTAGTAT
TGCCTGCATCGAAGCTAAACAAGCAGGAGAAACAATCGCCTCCCTCACAGATGTGACCAAATGG
AACCATTTGGAGTCAGATGGTCAGGTCACAATTCTGACAGACAAAACAGGAGTCGTGCAGGCGG
CCAGACTGCTGCTCTCCTCAGTGACAAAAGTGTTGCTGCTGGCAGATCAGGTAGTCATCAAGCA
AATAGTGACATCGAGAAACAAGGTTCTTGCAACCATGGAAAGGCTAGAGAGAGTAAACAGCTTT
CAGGAGTTTGTTCAGATATTCAGCCAGTTTGGAAACGAAATGGTGGAGTTTGCATACCTAACGG
GAGACAGACAAAATGATTTGAAAGATGAGAAGAAAAAGGCCAGAATGGCTGTGGCGAGGGCAGT
GCTTGAGAAGGGCACAATGATGCTCCTCACAGCCTCAAAGACGTGTCTCAGGCACCCCAGCTGT
GAGTCAGCCCATAAAAACAAAGAAGGAGTGTTTGATCGGATGAGAGCAGCCCTGGAGAAGGTCA
TCGAGATCGTGACTGACTGCAGACTCAACAGAGACACCGACAGCTCATCTGTCAGCATTTTTAC
TGGTATTAAAGAGTTGAAGTTGAATATGGAAGCTCTTCGGGAGAATGTTTACTTCGAGTCCAAG
GAGAACCTTTCTGCCGCATTGGAGGTCATCTTGGAGCGTGTGGAGGACTTCACCGATTCTGCCT
ACACCAGCCATGAGCACAGGGAACGCATCTTGGAACTGTCTGCGCAGGCGAGGACAGAAGTGCA
GCAGTTCATTTCCGTGTGGATGCAAGCTCAAAGCAGGAAGACAAAGAGCGCGGCCGAGGAGCTG
GAACTCACTGTGCTGAAGGTCAGCCACAGCCTGGACGAGCTGAGGAAAGAACTCCATTGTACAG
CCATGCAGCTGGCAGCCGACCTGTTAAAATTCCATGCCGATCATGTGGTTTTAAAAGCATTAAA
AGTTACTGGAGTAGAAGGAAATTTAGAAGCTTTGGCTGAGTATGCCTGTAAACTCTCTGAGCAG
AAAGAACAGCTTGTTGAGACATGTCGACTGTTGCGGCATGTATCCGGCACAGAACCCCTCGAGA
TAACGTGCATGCATGCAGAGGAGACATTCCAGGTGACTGGCCAACAGATCATTTCTGCTGCTGA
AACCCTGACGTTGCATCCGTCTAGCAAAATCGCTAAAGAAAACCTGGATGTGTTTTGTGAAGCG
TGGGAGTCTCAGATTAGTGATCTGGCAACGCTGCTAAGAGAGATCAGTGATGTGTTTGAAGGAC
GACGAGGAGAGAAGTATGACCATCTTTCACTTCCAAAGCCCATGAAAAATAATGCAAACCTGAA
ATCAGTGAAGTCTGACAAACCTGATTCAGAGGAGCAAGCCAAGATAGCCAAGCTTGGGCTGAAG
CTGGGATTGCTTTCCTCCGATGCTGACTGTGAAATCGAGAAATGGGAAGATGACGACAACGAGA
TCGTTCGACATGGACGGAATATGTCCAGGATGGCCTATTCTCTGTATTTATTTACTAGAGGAGA
GGGGCCACTGAAAACTTCCCAGGACTTAATTCACTTCCTGGAGGTTTTTGCTACAGAGGGATTA
AAGCTTACTTCAAGCATACAGTCTTTTTCAAAACAGCTAAAAGATGATGACAAACTTATGCTTC
TCCTGGAAATAAACAAACTAATTCCTCTATGCCACCAGCTTCAGACAATAACCAAGACATCTTT
GCAGAGTAAAGTGTTTCTGAAGGTTGACAAGTGTGTTACAAAGATAAGATCCATGATGACTCTC
GTGGTCCAGCTCCTCTCCCTTTGCTATAAGCTACTGAAAAAGATGGGAAATGACAGATGGGTCT
CTGCGACAAACAAAGATGCCATGGATGGTCAAACCTGAGCAGCCTGGGGTTCGTCTCTGGAATA
CCATGTGGTACAGCTGACATTTTAAAAAGCAAATGATCCTTTGTACTTTCATAAGTTCATCAGT
CTTTAAAAGAGGATGCTGAAATCTTTCTTTTCTCTGATCTTCAGATTAGACATGCACGTTGCTA
TGGTGGTTGCTAAGATTCTAACGGCAGTACAGTTGGAAAACAGACACTGAGCTCAGGTGTTCTT
TAGCACACACCAAATATCCCAAGGGTCTTAATGGCAGCTGAATTCCAAAGAAGCAATTGCAAAT
GCACATCCCCCAGCCCCCATCGGCTTCCTTAACTGGTTTTTAAGCTGATTATCTACAACACTAA
TTTCAGCAGAAAGCAGTGGCCTTGTTGAATGCAGGGTTTTCTTAGGCCTGGGGACTCTTCTTCA
GTTCTTGTTGAAGCAGGATAAGGGTCCCTCAGAGCCTGGTCCCAGATCACACCTGCTAGCACTG
TTGCTTCTAATAAGTATCTCACCGGATAAGGTTGTTAGGCTGCAACAGGAGTCACTCCAAAGAA
CCCTGGAGCAACTTCAGAGGAGGAGATGGTTTTTATTTTAGCTGTAGTATGCGTAGCTGACCAG
GCAGTCCTGAGTAATGGATGGAATCCTAAGTATTTCTTACTGGTTTAATAACACTTCAGAACTA
TCCTCAGTATTGATGAAATGACAGTTGCAGACGATAGAACATTGGAACCAAGAGGCTGTGTAGA
TCCCAGATACCTGTATGCTGTATTTCATGTATGTGGAATGGAATGCTCATTATACAATAAATAT
TTTTAGTCTTTTTAACTTTAGGGTTTAGACCTTTTCTTGGGCTGGGGAAACAACTCTGCCAGTA
ACCTGTTTGCCTTGTAAGCTGTGTAATAAAGCAAGGAAAAGGTTGCCCAGGAGATCACCCAGCT
GATCTGCTAGACTGTAGAGTATGAGAACAGGGCCGAGTGAGGGAGCGTGTGCAGTACCAGCGTG
TAGAGCTCTCACACCTTTAGCTACCATCAGATGCCGACATAACCAGTCTGTCAATGGTATAATC
TTGCAGGTAGCTTTACAGGGAATGATTGAGTGGAACCATCTTCAGTGAAATAGACAGGATTGGT
ACTAACGTGTGAGTGAAAATTCTGTGATTTCTTTTTAAACTGAGAAGCAGAATGCTAACTTCAC
TGGATTCTCAGTGTTAATAATTTAGTAATAAAGCAGCTCCCTCACCAGATATATGGCAACAATA
CCATTATCTTTAACAACAAAATAGGTGTATTAGTATTAAACATCATGGGATAATGTACACGTCA
ATAAAAACTGCACATTCAAACTGAATTCATACTGACTGGCTTAATCCTGATCCATCATCAAAAT
TTGGGGGCAGGCATACTGACCAGTGATAAGATTATAAAGACCCATTCCAAGCTATACTGTTTTA
TGTGCTGTATTTGAAAGCACTTCTAGTGTGGTTTTTAGTCTGTGAAGCAAACATTCTGTTAACC
TGCAATAAAATGAGCAGAGGAAGATATAACCTGTGAAACAGA

hide sequence

RefSeq Acc Id:

XM_039109442 ⟹ XP_038965370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	71,514,870 - 71,552,316 (-)	NCBI

RefSeq Acc Id:

XM_039109443 ⟹ XP_038965371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	71,514,870 - 71,540,378 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100119	(Get FASTA)	NCBI Sequence Viewer
	XP_006238239	(Get FASTA)	NCBI Sequence Viewer
	XP_038965370	(Get FASTA)	NCBI Sequence Viewer
	XP_038965371	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91687	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001100119 ⟸ NM_001106649

- UniProtKB:

D4A739 (UniProtKB/TrEMBL), A6KDR8 (UniProtKB/TrEMBL), A0A8I6GEV6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATSTAPGGGGAGAVHSSNASGLAFDSGLEIRTRSVEQTLLPLVSQITTLINHKDNTKKSDKTL
QAIQRVGQAVNLAVGRFVKVGEAIANENWDLKEEISIACIEAKQAGETIASLTDVTKWNHLESD
GQVTILTDKTGVVQAARLLLSSVTKVLLLADQVVIKQIVTSRNKVLATMERLERVNSFQEFVQI
FSQFGNEMVEFAYLTGDRQNDLKDEKKKARMAVARAVLEKGTMMLLTASKTCLRHPSCESAHKN
KEGVFDRMRAALEKVIEIVTDCRLNRDTDSSSVSIFTGIKELKLNMEALRENVYFESKENLSAA
LEVILERVEDFTDSAYTSHEHRERILELSAQARTEVQQFISVWMQAQSRKTKSAAEELELTVLK
VSHSLDELRKELHCTAMQLAADLLKFHADHVVLKALKVTGVEGNLEALAEYACKLSEQKEQLVE
TCRLLRHVSGTEPLEITCMHAEETFQVTGQQIISAAETLTLHPSSKIAKENLDVFCEAWESQIS
DLATLLREISDVFEGRRGEKYDHLSLPKPMKNNANLKSVKSDKPDSEEQAKIAKLGLKLGLLSS
DADCEIEKWEDDDNEIVRHGRNMSRMAYSLYLFTRGEGPLKTSQDLIHFLEVFATEGLKLTSSI
QSFSKQLKDDDKLMLLLEINKLIPLCHQLQTITKTSLQSKVFLKVDKCVTKIRSMMTLVVQLLS
LCYKLLKKMGNDRWVSATNKDAMDGQT

hide sequence

RefSeq Acc Id:	XP_006238239 ⟸ XM_006238177
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y1A6 (UniProtKB/TrEMBL), A0A8I6GEV6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVGTTITTLINHKDNTKKSDKTLQAIQRVGQAVNLAVGRFVKVGEAIANENWDLKEEISIACI EAKQAGETIASLTDVTKWNHLESDGQVTILTDKTGVVQAARLLLSSVTKVLLLADQVVIKQIVT SRNKVLATMERLERVNSFQEFVQIFSQFGNEMVEFAYLTGDRQNDLKDEKKKARMAVARAVLEK GTMMLLTASKTCLRHPSCESAHKNKEGVFDRMRAALEKVIEIVTDCRLNRDTDSSSVSIFTGIK ELKLNMEALRENVYFESKENLSAALEVILERVEDFTDSAYTSHEHRERILELSAQARTEVQQFI SVWMQAQSRKTKSAAEELELTVLKVSHSLDELRKELHCTAMQLAADLLKFHADHVVLKALKVTG VEGNLEALAEYACKLSEQKEQLVETCRLLRHVSGTEPLEITCMHAEETFQVTGQQIISAAETLT LHPSSKIAKENLDVFCEAWESQISDLATLLREISDVFEGRRGEKYDHLSLPKPMKNNANLKSVK SDKPDSEEQAKIAKLGLKLGLLSSDADCEIEKWEDDDNEIVRHGRNMSRMAYSLYLFTRGEGPL KTSQDLIHFLEVFATEGLKLTSSIQSFSKQLKDDDKLMLLLEINKLIPLCHQLQTITKTSLQSK VFLKVDKCVTKIRSMMTLVVQLLSLCYKLLKKMGNDRWVSATNKDAMDGQT hide sequence

RefSeq Acc Id:

ENSRNOP00000014888 ⟸ ENSRNOT00000014888

RefSeq Acc Id:	XP_038965370 ⟸ XM_039109442
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038965371 ⟸ XM_039109443
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000087173 ⟸ ENSRNOT00000101845

RefSeq Acc Id:

ENSRNOP00000077208 ⟸ ENSRNOT00000107280

RefSeq Acc Id:

ENSRNOP00000077198 ⟸ ENSRNOT00000106413

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A739-F1-model_v2	AlphaFold	D4A739	1-731	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311434	AgrOrtholog
BioCyc Gene	G2FUF-41218	BioCyc
Ensembl Genes	ENSRNOG00000010593	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014888	ENTREZGENE
	ENSRNOP00000014888.4	UniProtKB/TrEMBL
	ENSRNOP00000077198	ENTREZGENE
	ENSRNOP00000077198.1	UniProtKB/TrEMBL
	ENSRNOP00000077208.1	UniProtKB/TrEMBL
	ENSRNOP00000087173.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014888	ENTREZGENE
	ENSRNOT00000014888.5	UniProtKB/TrEMBL
	ENSRNOT00000101845.1	UniProtKB/TrEMBL
	ENSRNOT00000106413	ENTREZGENE
	ENSRNOT00000106413.1	UniProtKB/TrEMBL
	ENSRNOT00000107280.1	UniProtKB/TrEMBL
Gene3D-CATH	Alpha-catenin/vinculin-like	UniProtKB/TrEMBL
	Vinculin, Vh2 four-helix bundle	UniProtKB/TrEMBL
InterPro	Alpha-catenin/vinculin-like_sf	UniProtKB/TrEMBL
	Alpha_catenin	UniProtKB/TrEMBL
	CTNNAL1	UniProtKB/TrEMBL
	Vinculin/catenin	UniProtKB/TrEMBL
KEGG Report	rno:298019	UniProtKB/TrEMBL
NCBI Gene	298019	ENTREZGENE
PANTHER	ALPHA-CATULIN	UniProtKB/TrEMBL
	PTHR46342	UniProtKB/TrEMBL
Pfam	Vinculin	UniProtKB/TrEMBL
PhenoGen	Ctnnal1	PhenoGen
PRINTS	ALPHACATENIN	UniProtKB/TrEMBL
Superfamily-SCOP	Vinculin/catenin	UniProtKB/TrEMBL
UniProt	A0A8I5Y1A6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y7A6_RAT	UniProtKB/TrEMBL
	A0A8I6GEV6	ENTREZGENE, UniProtKB/TrEMBL
	A6KDR8	ENTREZGENE, UniProtKB/TrEMBL
	D4A739	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Ctnnal1	catenin alpha-like 1	Ctnnal1	catenin (cadherin associated protein), alpha-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ctnnal1	catenin (cadherin associated protein), alpha-like 1	Ctnnal1_predicted	catenin (cadherin associated protein), alpha-like 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ctnnal1_predicted	catenin (cadherin associated protein), alpha-like 1 (predicted)	Catnal1_predicted	catenin alpha-like 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Catnal1_predicted	catenin alpha-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar