Rps20l1 (ribosomal protein S20 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rps20l1 (ribosomal protein S20 like 1) Rattus norvegicus
Analyze
Symbol: Rps20l1 (Ensembl: RGD1562259)
Name: ribosomal protein S20 like 1 (Ensembl:similar to 40S ribosomal protein S20)
RGD ID: 1562259
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation; INTERACTS WITH bisphenol A; rotenone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S20-like; LOC500451; RGD1562259; similar to 40S ribosomal protein S20
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,663,405 - 62,663,926 (-)NCBIGRCr8
mRatBN7.2557,867,628 - 57,868,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,867,676 - 57,868,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,847,622 - 59,848,143 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,666,439 - 61,666,960 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,637,720 - 61,638,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,113,366 - 59,113,815 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.4560,090,675 - 60,091,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera556,448,150 - 56,448,599 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
rotenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps20l1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000040481
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000083129   ⟹   ENSRNOP00000073861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,867,676 - 57,868,035 (-)Ensembl
RefSeq Acc Id: NM_001402105   ⟹   NP_001389034
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,663,405 - 62,663,926 (-)NCBI
mRatBN7.2557,867,628 - 57,868,149 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001389034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073861
  ENSRNOP00000073861.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000073861   ⟸   ENSRNOT00000083129
RefSeq Acc Id: NP_001389034   ⟸   NM_001402105
- UniProtKB: A0A0G2K6L6 (UniProtKB/TrEMBL)
Protein Domains
Small ribosomal subunit protein uS10

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6L6-F1-model_v2 AlphaFold A0A0G2K6L6 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-41500 BioCyc
Ensembl Genes ENSRNOG00000070923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083129 ENTREZGENE
  ENSRNOT00000083129.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.600 UniProtKB/TrEMBL
InterPro Ribosomal_S10 UniProtKB/TrEMBL
  Ribosomal_S10_CS UniProtKB/TrEMBL
  Ribosomal_S10_dom UniProtKB/TrEMBL
  Ribosomal_S10_dom_sf UniProtKB/TrEMBL
  Ribosomal_S10_euk/arc UniProtKB/TrEMBL
NCBI Gene 500451 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S20 UniProtKB/TrEMBL
  PTHR11700 UniProtKB/TrEMBL
Pfam Ribosomal_S10 UniProtKB/TrEMBL
PhenoGen Rps20l1 PhenoGen
PRINTS RIBOSOMALS10 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S10 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070923 RatGTEx
SMART Ribosomal_S10 UniProtKB/TrEMBL
Superfamily-SCOP SSF54999 UniProtKB/TrEMBL
UniProt A0A0G2K6L6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps20l1  ribosomal protein S20 like 1  RGD1562259  similar to 40S ribosomal protein S20  Symbol and Name Changed 1299863 APPROVED
2022-06-01 RGD1562259  similar to 40S ribosomal protein S20  RGD1562259  similar to 40S ribosomal protein S20  Data merged from RGD:149736094 737654 PROVISIONAL
2021-08-09 RGD1562259  similar to 40S ribosomal protein S20      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1562259  similar to 40S ribosomal protein S20   RGD1562259_predicted  similar to 40S ribosomal protein S20 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562259_predicted  similar to 40S ribosomal protein S20 (predicted)  LOC500451  similar to 40S ribosomal protein S20  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500451  similar to 40S ribosomal protein S20      Symbol and Name status set to provisional 70820 PROVISIONAL