 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway Annotations |
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
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Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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InterViewer (Protein-Protein Interactions) |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Choi JS, etal., Mol Cells 2004 Apr 30;17(2):292-6. |
| 2. | Davis S, etal., Science. 1991 Jul 5;253(5015):59-63. |
| 3. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 4. | Ip NY, etal., Neuron 1993 Jan;10(1):89-102. |
| 5. | MGD data from the GO Consortium |
| 6. | Ozog MA, etal., Mol Biol Cell 2004 Nov;15(11):4761-74. Epub 2004 Sep 1. |
| 7. | Pipeline to import KEGG annotations from KEGG into RGD |
| 8. | RGD automated data pipeline |
| 9. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 10. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 7585948 8385113 8460125 10526311 11285233 11312299 12643274 12707266 15051883 15272019 15755520 18086669 18588528 19666135 21912637 22037350 22146310 23325260 25799580 31185137 |
Genomics
Comparative Map Data| Cntfr (Rattus norvegicus - Norway rat) |
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| CNTFR (Homo sapiens - human) |
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| Cntfr (Mus musculus - house mouse) |
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| Cntfr (Chinchilla lanigera - long-tailed chinchilla) |
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| CNTFR (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CNTFR (Canis lupus familiaris - dog) |
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| Cntfr (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CNTFR (Sus scrofa - pig) |
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| CNTFR (Chlorocebus sabaeus - African green monkey) |
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| Cntfr (Heterocephalus glaber - naked mole-rat) |
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Position Markers| UniSTS:496823 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 14 | 6 | 6 | 6 | 3 | 66 | 18 | 26 | |||||
| Low | 3 | 24 | 37 | 27 | 3 | 27 | 8 | 8 | 8 | 15 | 14 | 11 | 8 |
| Below cutoff | 5 | 13 | 8 | 12 | 8 | 2 | 1 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001003929 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006238055 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593359 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07048041 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07048042 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01036353 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01036354 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| S54212 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000075777 ⟹ ENSRNOP00000066185 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001003929 ⟹ NP_001003929 | ||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
CAACACATCATCCCAGGAAGACTTTGGTCTGCAGAGGAGGATAATATTGATGTGCTTGGAGAGChide sequence |
| RefSeq Acc Id: | XM_006238055 ⟹ XP_006238117 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
AGAGGAGCCGGTGCAGAGCGGGCGGCGGCGGCGGCAGTGGAGGCGGCGGCTCCAGCCGGCGCGGhide sequence |
| RefSeq Acc Id: | XM_017593357 ⟹ XP_017448846 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AGAGGAGCCGGTGCAGAGCGGGCGGCGGCGGCGGCAGTGGAGGCGGCGGCTCCAGCCGGCGCGGhide sequence |
| RefSeq Acc Id: | XM_017593358 ⟹ XP_017448847 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AGAGGAGCCGGTGCAGAGCGGGCGGCGGCGGCGGCAGTGGAGGCGGCGGCTCCAGCCGGCGCGGhide sequence |
| RefSeq Acc Id: | XM_017593359 ⟹ XP_017448848 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGATGCATGTGTGCCTGTCTTGGACATCTTCCGCCTCCAGAGCGTGACTAGAGACCTAGAAGGAhide sequence |
Protein Sequences| Protein RefSeqs | NP_001003929 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006238117 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448846 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448847 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448848 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAB25290 | (Get FASTA) | NCBI Sequence Viewer |
| EDL98683 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL98684 | (Get FASTA) | NCBI Sequence Viewer | |
| Q08406 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001003929 ⟸ NM_001003929 |
| - Peptide Label: | precursor |
| - UniProtKB: | Q08406 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGTDVTLPCGTASWDAAVTWRVNGTDLhide sequence |
| RefSeq Acc Id: | XP_006238117 ⟸ XM_006238055 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGTDVTLPCGTASWDAAVTWRVNGTDLhide sequence |
| RefSeq Acc Id: | XP_017448846 ⟸ XM_017593357 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | M0R9L2 (UniProtKB/TrEMBL) |
| - Sequence: |
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGTDVTLPCGTASWDAAVTWRVNGTDLhide sequence |
| RefSeq Acc Id: | XP_017448847 ⟸ XM_017593358 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | M0R9L2 (UniProtKB/TrEMBL) |
| - Sequence: |
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGTDVTLPCGTASWDAAVTWRVNGTDLhide sequence |
| RefSeq Acc Id: | XP_017448848 ⟸ XM_017593359 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | M0R9L2 (UniProtKB/TrEMBL) |
| - Sequence: |
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGTDVTLPCGTASWDAAVTWRVNGTDLhide sequence |
| RefSeq Acc Id: | ENSRNOP00000066185 ⟸ ENSRNOT00000075777 |
Protein Domains
Fibronectin type-III Ig-like Ig-like C2-type
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1303100 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000047307 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000066185 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000075777 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/Swiss-Prot |
| InterPro | FN3_dom | UniProtKB/Swiss-Prot |
| FN3_sf | UniProtKB/Swiss-Prot | |
| Hematopoietin_rcpt_L_F3_CS | UniProtKB/Swiss-Prot | |
| Ig-like_dom | UniProtKB/Swiss-Prot | |
| Ig-like_dom_sf | UniProtKB/Swiss-Prot | |
| Ig-like_fold | UniProtKB/Swiss-Prot | |
| Ig_sub | UniProtKB/Swiss-Prot | |
| Ig_sub2 | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:313173 | UniProtKB/Swiss-Prot |
| NCBI Gene | 313173 | ENTREZGENE |
| Pfam | fn3 | UniProtKB/Swiss-Prot |
| PhenoGen | Cntfr | PhenoGen |
| PROSITE | FN3 | UniProtKB/Swiss-Prot |
| HEMATOPO_REC_L_F3 | UniProtKB/Swiss-Prot | |
| IG_LIKE | UniProtKB/Swiss-Prot | |
| SMART | FN3 | UniProtKB/Swiss-Prot |
| IGc2 | UniProtKB/Swiss-Prot | |
| SM00409 | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | SSF48726 | UniProtKB/Swiss-Prot |
| SSF49265 | UniProtKB/Swiss-Prot | |
| UniGene | Rn.55036 | ENTREZGENE |
| UniProt | CNTFR_RAT | UniProtKB/Swiss-Prot |
| M0R9L2 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q08406 | ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2006-03-30 | Cntfr | ciliary neurotrophic factor receptor | Symbol and Name status set to approved | 1299863 | APPROVED | ||
| 2005-02-14 | Cntfr | ciliary neurotrophic factor receptor | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Cntfr | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1303100 |
| Created: | 2004-12-03 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-05-19 |
| Status: | ACTIVE |
