Cntfr (ciliary neurotrophic factor receptor)

Gene: Cntfr (ciliary neurotrophic factor receptor) Ictidomys tridecemlineatus

Analyze

Symbol:

Cntfr

Name:

ciliary neurotrophic factor receptor

RGD ID:

12523355

Description:

ENCODES a protein that exhibits ciliary neurotrophic factor receptor activity (ortholog); cytokine binding (ortholog); INVOLVED IN brainstem development (ortholog); ciliary neurotrophic factor-mediated signaling pathway (ortholog); motor neuron apoptotic process (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN apical plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ciliary neurotrophic factor receptor subunit alpha; ciliary neurotrophic factor receptor, transcript variant X1; ciliary neurotrophic factor receptor, transcript variant X2; ciliary neurotrophic factor receptor, transcript variant X4; ciliary neurotrophic factor receptor, transcript variant X5; ciliary neurotrophic factor receptor, transcript variant X6; ciliary neurotrophic factor receptor, transcript variant X7; ciliary neurotrophic factor receptor, transcript variant X8

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	166,088,587 - 166,127,184 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	2,636,166 - 2,674,192 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	2,636,166 - 2,674,488 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

autosomal recessive distal hereditary motor neuronopathy 2 (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

genetic disease (ISO)

hyperphosphatasia with impaired intellectual development syndrome 2 (ISO)

primary ciliary dyskinesia (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brainstem development (IEA,ISO)

ciliary neurotrophic factor-mediated signaling pathway (IEA,ISO)

motor neuron apoptotic process (IEA,ISO)

negative regulation of motor neuron apoptotic process (IEA,ISO)

negative regulation of neuron apoptotic process (IEA)

positive regulation of cell population proliferation (IEA,ISO)

response to organic substance (IEA)

sex differentiation (IEA,ISO)

skeletal muscle organ development (IEA,ISO)

suckling behavior (IEA,ISO)

Cellular Component

apical plasma membrane (IEA,ISO)

ciliary neurotrophic factor receptor complex (IEA)

CNTFR-CLCF1 complex (IEA)

external side of plasma membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

ciliary neurotrophic factor receptor activity (IEA,ISO)

cytokine binding (IEA,ISO)

cytokine receptor activity (IEA)

protein binding (ISO)

signaling receptor binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cntfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	166,088,587 - 166,127,184 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	2,636,166 - 2,674,192 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	2,636,166 - 2,674,488 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTFR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	34,551,433 - 34,590,852 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	34,551,432 - 34,590,140 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	34,551,431 - 34,590,157 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	34,541,431 - 34,579,722 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	34,541,430 - 34,579,722	NCBI
Celera	9	34,482,940 - 34,521,225 (-)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	34,505,791 - 34,566,338 (-)	NCBI		HuRef
CHM1_1	9	34,551,220 - 34,589,921 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	34,569,984 - 34,609,005 (-)	NCBI		T2T-CHM13v2.0

Cntfr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,657,498 - 41,697,091 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	41,657,498 - 41,697,089 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	41,657,498 - 41,697,091 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,657,498 - 41,697,089 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	41,604,529 - 41,644,123 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	41,846,167 - 41,885,712 (-)	NCBI		MGSCv36	mm8
Celera	4	41,319,986 - 41,355,439 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	21.81	NCBI

Cntfr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,619,326 - 61,657,359 (-)	NCBI		GRCr8
mRatBN7.2	5	56,823,448 - 56,861,049 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,823,965 - 56,841,392 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	58,803,485 - 58,832,001 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,622,311 - 60,650,828 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	60,608,710 - 60,637,223 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	58,041,114 - 58,078,687 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,041,146 - 58,078,545 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,566,649 - 62,594,369 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	55,418,121 - 55,446,426 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Cntfr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	1,540,973 - 1,579,947 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	1,540,973 - 1,577,734 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNTFR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	90,013,433 - 90,052,344 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	90,019,374 - 90,058,284 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	34,387,929 - 34,426,907 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	35,197,474 - 35,236,234 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,197,474 - 35,214,977 (-)	Ensembl	panpan1.1		panPan2

CNTFR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	51,226,951 - 51,266,431 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	51,227,509 - 51,245,188 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	49,856,718 - 49,885,981 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	52,168,591 - 52,207,166 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	52,156,483 - 52,206,853 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	50,831,810 - 50,861,067 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	50,699,974 - 50,729,298 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	51,464,730 - 51,493,994 (-)	NCBI		UU_Cfam_GSD_1.0

CNTFR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	32,211,777 - 32,251,503 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	32,211,809 - 32,251,412 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	36,352,329 - 36,392,542 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNTFR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	46,017,992 - 46,068,187 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	46,030,203 - 46,069,944 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	43,135,677 - 43,185,259 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntfr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	38,943,803 - 38,961,547 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	38,943,842 - 38,983,473 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005326215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002484079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002783 ⟹ ENSSTOP00000002490

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936524	2,636,166 - 2,674,192 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036813 ⟹ ENSSTOP00000031234

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936524	2,648,318 - 2,653,707 (-)	Ensembl

RefSeq Acc Id:

XM_005326214 ⟹ XP_005326271

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,126,619 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,674,192 (-)	NCBI

Sequence:

show sequence

CGGCGGCAGCGGAGGCGGCGGCTCCAGCCGGCGCGGCGCGAGGTTCGGCGGTGGGATCCGGCAG
CGGTGCTAGCTTCGCGCTGCTTGCCTTGCTCCCTGCCGGGGGCGGTCGAAGGGCGCGGCGCGGA
GCCCGGGTGGCCCCAGGGCGCGAATCCAGACTTGTCACATCATCCCACCCCCTTGGTTTTGGAA
GTCCTGGGAAGAGTGGTCTCGAGGAAGAAAAGGACATTGATGTGCTTGGAGTGTGGCTGGTGGT
GAAGAGGGCCTCCTTCATGATGGCTGCTCCTGTCCCATGGGCCTGCTGTGCTGTGCTTGCTGCC
GCTGCTGCCGTTGTCTACACCCAAAGACACAGTCCACAGGAGACGCCCCATGTGCAGTATGAGC
GCCTGGGATCAGATGTGACATTGCCATGTGGAACAGCAAATTGGGATGCAGCTGTGACGTGGCG
GGTGAATGGAACAGATCTGGCCCCTGACCTGCTCAATGGCTCTCAACTGGTACTCCGTGGCCTG
GATCTGGGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGACTCCTGGCACCTGCGCCACCAAG
TCCTGCTACATGTGGGCTTGCCACCACGGGAACCTGTGCTTAGCTGCCGCTCCAACACTTACCC
CAAGGGCTTCTACTGCAGCTGGCATCTGCCCACCCCCACCTACATCCCAAACACCTTCAATGTG
ACTGTGCTGCACGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCTGCC
ACATCCGATACATGCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAATGC
TCTGGGTCACAACGCCACGGCTATCACCTTTGATGAGTTCACCATTGTGAAGCCTGACCCTCCA
GAAAATGTGGTAGCCCGGCCAGTGCCTAGCAACCCTCGTCGGCTGGAGGTGACGTGGCAGACCC
CCTCGACTTGGCCTGACCCTGAGTCCTTTCCTCTGAAGTTCTTTTTGCGTTACCGGCCCCTCAT
CCTGGACCAGTGGCAGCATGTGGAGCTGTCTGATGGCACAGCACATACCATCACAGATGCCTAT
GCTGGGAAGGAGTACATTATCCAGGTGGCAGCCAAGGACAATGAGATTGGGACATGGAGCGACT
GGAGCGTGGCTGCTCATGCCACCCCCTGGACTGAGGAACCACGACACCTCACCACCGAGGCCCA
GGCCCCGGAGACCACGACCAGCACTACCAGCTCACTGGCACCCCCGCCCACCACGAAGATCTGT
GACCCTGGGGAGCTGGGCAGCGGCGGAGGACCCTCGGTACCCTTCTTGATCAGTGTCCCTGTCA
CTCTGGCCCTGGCTGCCGCTGCCGCCACTGCCAACAGTCTCCTGATCTGAACCCGGCATCCCAT
GAGGACATGCCAGAGCACTGCAGAGGAGCAGGAGGCCGGAGCTGAGCCTGCAGACCCCGGTTTC
TATTTTGCACACGGGCAGGAGGACCTTTTGCATTCTCTTCAGAAACAATTTGTAGAGACCCCGG
CGGGCCCGGGCCTGCCATCCCTTAGCCCCGCCACACCAAGCTGGCCCTCCTCCCACCTTCAGGG
GAGGAGGACCATGCAGCTAACCCACCCACCAAAGACTCTCCCCTCATCTGCCTCCTCGGGCTGG
ACCCTCCAACGCCAGCGACTCCCAGGAGCCCTTGGGGGGCCTGAGGGGAGCCCTTCACATTCAC
AATTCCTCCTCCTGCCCCAGCCTCCTGTCTGTCCCAGGGTCTCTGTTGCCACCATCAGATTATA
AGCTCCTGACGCTGGGGGGGCCCAGCCATCCCCCTCCCCCCAGTGCCCACACTTTTCAGTATCC
CCACCTCTGCCCTGTTTTGTATGACCCTCCCCTGACCTTGTCCTACCCCACAGTATTTAATGCC
CTGTCAGTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGTATTTGAATTTTTTATAGATGTAT
ATACAGGGGTGGGAGGGTTGGGGGGGTTCTCATTAAACGTCACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_005326215 ⟹ XP_005326272

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,126,629 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,674,219 (-)	NCBI

Sequence:

show sequence

GAGGAGCCGGTGCAGAGCGGGCGGCGGCGGCGGCAGCGGAGGCGGCGGCTCCAGCCGGCGCGGC
GCGAGGTTCGGCGGTGGGATCCGGCAGCGGTGCTAGCTTCGCGCTGCTTGCCTTGCTCCCTGCC
GGGGGCGGTCGAAGGGCGCGGCGCGGAGCCCGGGTGGCCCCAGGGCGCGAATCCAGACTTGTCA
CATCATCCCACCCCCTTGGTTTTGGAAGTCCTGGGAAGAGTGGTCTCGAGGAAGAAAAGGACAT
TGATGTGCTTGGAGTGTGGCTGGTGGTGAAGAGATGGCTGCTCCTGTCCCATGGGCCTGCTGTG
CTGTGCTTGCTGCCGCTGCTGCCGTTGTCTACACCCAAAGACACAGTCCACAGGAGACGCCCCA
TGTGCAGTATGAGCGCCTGGGATCAGATGTGACATTGCCATGTGGAACAGCAAATTGGGATGCA
GCTGTGACGTGGCGGGTGAATGGAACAGATCTGGCCCCTGACCTGCTCAATGGCTCTCAACTGG
TACTCCGTGGCCTGGATCTGGGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGACTCCTGGCA
CCTGCGCCACCAAGTCCTGCTACATGTGGGCTTGCCACCACGGGAACCTGTGCTTAGCTGCCGC
TCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGGCATCTGCCCACCCCCACCTACATCCCAA
ACACCTTCAATGTGACTGTGCTGCACGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCT
CAAGAACCGCTGCCACATCCGATACATGCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATA
AGTGTCAGCAATGCTCTGGGTCACAACGCCACGGCTATCACCTTTGATGAGTTCACCATTGTGA
AGCCTGACCCTCCAGAAAATGTGGTAGCCCGGCCAGTGCCTAGCAACCCTCGTCGGCTGGAGGT
GACGTGGCAGACCCCCTCGACTTGGCCTGACCCTGAGTCCTTTCCTCTGAAGTTCTTTTTGCGT
TACCGGCCCCTCATCCTGGACCAGTGGCAGCATGTGGAGCTGTCTGATGGCACAGCACATACCA
TCACAGATGCCTATGCTGGGAAGGAGTACATTATCCAGGTGGCAGCCAAGGACAATGAGATTGG
GACATGGAGCGACTGGAGCGTGGCTGCTCATGCCACCCCCTGGACTGAGGAACCACGACACCTC
ACCACCGAGGCCCAGGCCCCGGAGACCACGACCAGCACTACCAGCTCACTGGCACCCCCGCCCA
CCACGAAGATCTGTGACCCTGGGGAGCTGGGCAGCGGCGGAGGACCCTCGGTACCCTTCTTGAT
CAGTGTCCCTGTCACTCTGGCCCTGGCTGCCGCTGCCGCCACTGCCAACAGTCTCCTGATCTGA
ACCCGGCATCCCATGAGGACATGCCAGAGCACTGCAGAGGAGCAGGAGGCCGGAGCTGAGCCTG
CAGACCCCGGTTTCTATTTTGCACACGGGCAGGAGGACCTTTTGCATTCTCTTCAGAAACAATT
TGTAGAGACCCCGGCGGGCCCGGGCCTGCCATCCCTTAGCCCCGCCACACCAAGCTGGCCCTCC
TCCCACCTTCAGGGGAGGAGGACCATGCAGCTAACCCACCCACCAAAGACTCTCCCCTCATCTG
CCTCCTCGGGCTGGACCCTCCAACGCCAGCGACTCCCAGGAGCCCTTGGGGGGCCTGAGGGGAG
CCCTTCACATTCACAATTCCTCCTCCTGCCCCAGCCTCCTGTCTGTCCCAGGGTCTCTGTTGCC
ACCATCAGATTATAAGCTCCTGACGCTGGGGGGGCCCAGCCATCCCCCTCCCCCCAGTGCCCAC
ACTTTTCAGTATCCCCACCTCTGCCCTGTTTTGTATGACCCTCCCCTGACCTTGTCCTACCCCA
CAGTATTTAATGCCCTGTCAGTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGTATTTGAATT
TTTTATAGATGTATATACAGGGGTGGGAGGGTTGGGGGGGTTCTCATTAAACGTCACCATTTCA
TGAG

hide sequence

RefSeq Acc Id:

XM_013359071 ⟹ XP_013214525

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,127,035 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,674,487 (-)	NCBI

Sequence:

show sequence

CTCACAGGCCTGAGCAGAAATCCAGACTTGTCACATCATCCCACCCCCTTGGTTTTGGAAGTCC
TGGGAAGAGTGGTCTCGAGGAAGAAAAGGACATTGATGTGCTTGGAGTGTGGCTGGTGGTGAAG
AGGGCCTCCTTCATGATGGCTGCTCCTGTCCCATGGGCCTGCTGTGCTGTGCTTGCTGCCGCTG
CTGCCGTTGTCTACACCCAAAGACACAGTCCACAGGAGACGCCCCATGTGCAGTATGAGCGCCT
GGGATCAGATGTGACATTGCCATGTGGAACAGCAAATTGGGATGCAGCTGTGACGTGGCGGGTG
AATGGAACAGATCTGGCCCCTGACCTGCTCAATGGCTCTCAACTGGTACTCCGTGGCCTGGATC
TGGGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGACTCCTGGCACCTGCGCCACCAAGTCCT
GCTACATGTGGGCTTGCCACCACGGGAACCTGTGCTTAGCTGCCGCTCCAACACTTACCCCAAG
GGCTTCTACTGCAGCTGGCATCTGCCCACCCCCACCTACATCCCAAACACCTTCAATGTGACTG
TGCTGCACGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCTGCCACAT
CCGATACATGCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAATGCTCTG
GGTCACAACGCCACGGCTATCACCTTTGATGAGTTCACCATTGTGAAGCCTGACCCTCCAGAAA
ATGTGGTAGCCCGGCCAGTGCCTAGCAACCCTCGTCGGCTGGAGGTGACGTGGCAGACCCCCTC
GACTTGGCCTGACCCTGAGTCCTTTCCTCTGAAGTTCTTTTTGCGTTACCGGCCCCTCATCCTG
GACCAGTGGCAGCATGTGGAGCTGTCTGATGGCACAGCACATACCATCACAGATGCCTATGCTG
GGAAGGAGTACATTATCCAGGTGGCAGCCAAGGACAATGAGATTGGGACATGGAGCGACTGGAG
CGTGGCTGCTCATGCCACCCCCTGGACTGAGGAACCACGACACCTCACCACCGAGGCCCAGGCC
CCGGAGACCACGACCAGCACTACCAGCTCACTGGCACCCCCGCCCACCACGAAGATCTGTGACC
CTGGGGAGCTGGGCAGCGGCGGAGGACCCTCGGTACCCTTCTTGATCAGTGTCCCTGTCACTCT
GGCCCTGGCTGCCGCTGCCGCCACTGCCAACAGTCTCCTGATCTGAACCCGGCATCCCATGAGG
ACATGCCAGAGCACTGCAGAGGAGCAGGAGGCCGGAGCTGAGCCTGCAGACCCCGGTTTCTATT
TTGCACACGGGCAGGAGGACCTTTTGCATTCTCTTCAGAAACAATTTGTAGAGACCCCGGCGGG
CCCGGGCCTGCCATCCCTTAGCCCCGCCACACCAAGCTGGCCCTCCTCCCACCTTCAGGGGAGG
AGGACCATGCAGCTAACCCACCCACCAAAGACTCTCCCCTCATCTGCCTCCTCGGGCTGGACCC
TCCAACGCCAGCGACTCCCAGGAGCCCTTGGGGGGCCTGAGGGGAGCCCTTCACATTCACAATT
CCTCCTCCTGCCCCAGCCTCCTGTCTGTCCCAGGGTCTCTGTTGCCACCATCAGATTATAAGCT
CCTGACGCTGGGGGGGCCCAGCCATCCCCCTCCCCCCAGTGCCCACACTTTTCAGTATCCCCAC
CTCTGCCCTGTTTTGTATGACCCTCCCCTGACCTTGTCCTACCCCACAGTATTTAATGCCCTGT
CAGTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGTATTTGAATTTTTTATAGATGTATATAC
AGGGGTGGGAGGGTTGGGGGGGTTCTCATTAAACGTCACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_021726934 ⟹ XP_021582609

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,114,653 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,661,944 (-)	NCBI

Sequence:

show sequence

GTCCTGTTGCTGTGCCTGGCTTCCATGGAGCCCTATCAGGCTCCTTTTAGGATGGGGGCGTCAG
GGCCCCAGCTACACCTGGAGTGGCAAGTGGGCCTCCTTCATGATGGCTGCTCCTGTCCCATGGG
CCTGCTGTGCTGTGCTTGCTGCCGCTGCTGCCGTTGTCTACACCCAAAGACACAGTCCACAGGA
GACGCCCCATGTGCAGTATGAGCGCCTGGGATCAGATGTGACATTGCCATGTGGAACAGCAAAT
TGGGATGCAGCTGTGACGTGGCGGGTGAATGGAACAGATCTGGCCCCTGACCTGCTCAATGGCT
CTCAACTGGTACTCCGTGGCCTGGATCTGGGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGA
CTCCTGGCACCTGCGCCACCAAGTCCTGCTACATGTGGGCTTGCCACCACGGGAACCTGTGCTT
AGCTGCCGCTCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGGCATCTGCCCACCCCCACCT
ACATCCCAAACACCTTCAATGTGACTGTGCTGCACGGCTCCAAAATTATGGTCTGTGAGAAGGA
CCCAGCCCTCAAGAACCGCTGCCACATCCGATACATGCACCTGTTCTCAACCATCAAGTACAAG
GTCTCCATAAGTGTCAGCAATGCTCTGGGTCACAACGCCACGGCTATCACCTTTGATGAGTTCA
CCATTGTGAAGCCTGACCCTCCAGAAAATGTGGTAGCCCGGCCAGTGCCTAGCAACCCTCGTCG
GCTGGAGGTGACGTGGCAGACCCCCTCGACTTGGCCTGACCCTGAGTCCTTTCCTCTGAAGTTC
TTTTTGCGTTACCGGCCCCTCATCCTGGACCAGTGGCAGCATGTGGAGCTGTCTGATGGCACAG
CACATACCATCACAGATGCCTATGCTGGGAAGGAGTACATTATCCAGGTGGCAGCCAAGGACAA
TGAGATTGGGACATGGAGCGACTGGAGCGTGGCTGCTCATGCCACCCCCTGGACTGAGGAACCA
CGACACCTCACCACCGAGGCCCAGGCCCCGGAGACCACGACCAGCACTACCAGCTCACTGGCAC
CCCCGCCCACCACGAAGATCTGTGACCCTGGGGAGCTGGGCAGCGGCGGAGGACCCTCGGTACC
CTTCTTGATCAGTGTCCCTGTCACTCTGGCCCTGGCTGCCGCTGCCGCCACTGCCAACAGTCTC
CTGATCTGAACCCGGCATCCCATGAGGACATGCCAGAGCACTGCAGAGGAGCAGGAGGCCGGAG
CTGAGCCTGCAGACCCCGGTTTCTATTTTGCACACGGGCAGGAGGACCTTTTGCATTCTCTTCA
GAAACAATTTGTAGAGACCCCGGCGGGCCCGGGCCTGCCATCCCTTAGCCCCGCCACACCAAGC
TGGCCCTCCTCCCACCTTCAGGGGAGGAGGACCATGCAGCTAACCCACCCACCAAAGACTCTCC
CCTCATCTGCCTCCTCGGGCTGGACCCTCCAACGCCAGCGACTCCCAGGAGCCCTTGGGGGGCC
TGAGGGGAGCCCTTCACATTCACAATTCCTCCTCCTGCCCCAGCCTCCTGTCTGTCCCAGGGTC
TCTGTTGCCACCATCAGATTATAAGCTCCTGACGCTGGGGGGGCCCAGCCATCCCCCTCCCCCC
AGTGCCCACACTTTTCAGTATCCCCACCTCTGCCCTGTTTTGTATGACCCTCCCCTGACCTTGT
CCTACCCCACAGTATTTAATGCCCTGTCAGTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGT
ATTTGAATTTTTTATAGATGTATATACAGGGGTGGGAGGGTTGGGGGGGTTCTCATTAAACGTC
ACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_021726935 ⟹ XP_021582610

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,115,157 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,662,742 (-)	NCBI

Sequence:

show sequence

GCCGGGGCTGCCGGGGCCCCAGCCCTGAGCCCCGGGGACCCGATGCCCGCGGGCGGCCGAGCGG
ACCCACGGAGCGCCGGAGGCATCGACGGGCGCCTGCGCGGGGACCCAGGTCCTGTTGCTGTGCC
TGGCTTCCATGGAGCCCTATCAGGCTCCTTTTAGGATGGGGGCGTCAGGGCCCCAGCTACACCT
GGAGTGGCAAGTGATGGCTGCTCCTGTCCCATGGGCCTGCTGTGCTGTGCTTGCTGCCGCTGCT
GCCGTTGTCTACACCCAAAGACACAGTCCACAGGAGACGCCCCATGTGCAGTATGAGCGCCTGG
GATCAGATGTGACATTGCCATGTGGAACAGCAAATTGGGATGCAGCTGTGACGTGGCGGGTGAA
TGGAACAGATCTGGCCCCTGACCTGCTCAATGGCTCTCAACTGGTACTCCGTGGCCTGGATCTG
GGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGACTCCTGGCACCTGCGCCACCAAGTCCTGC
TACATGTGGGCTTGCCACCACGGGAACCTGTGCTTAGCTGCCGCTCCAACACTTACCCCAAGGG
CTTCTACTGCAGCTGGCATCTGCCCACCCCCACCTACATCCCAAACACCTTCAATGTGACTGTG
CTGCACGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCTGCCACATCC
GATACATGCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAATGCTCTGGG
TCACAACGCCACGGCTATCACCTTTGATGAGTTCACCATTGTGAAGCCTGACCCTCCAGAAAAT
GTGGTAGCCCGGCCAGTGCCTAGCAACCCTCGTCGGCTGGAGGTGACGTGGCAGACCCCCTCGA
CTTGGCCTGACCCTGAGTCCTTTCCTCTGAAGTTCTTTTTGCGTTACCGGCCCCTCATCCTGGA
CCAGTGGCAGCATGTGGAGCTGTCTGATGGCACAGCACATACCATCACAGATGCCTATGCTGGG
AAGGAGTACATTATCCAGGTGGCAGCCAAGGACAATGAGATTGGGACATGGAGCGACTGGAGCG
TGGCTGCTCATGCCACCCCCTGGACTGAGGAACCACGACACCTCACCACCGAGGCCCAGGCCCC
GGAGACCACGACCAGCACTACCAGCTCACTGGCACCCCCGCCCACCACGAAGATCTGTGACCCT
GGGGAGCTGGGCAGCGGCGGAGGACCCTCGGTACCCTTCTTGATCAGTGTCCCTGTCACTCTGG
CCCTGGCTGCCGCTGCCGCCACTGCCAACAGTCTCCTGATCTGAACCCGGCATCCCATGAGGAC
ATGCCAGAGCACTGCAGAGGAGCAGGAGGCCGGAGCTGAGCCTGCAGACCCCGGTTTCTATTTT
GCACACGGGCAGGAGGACCTTTTGCATTCTCTTCAGAAACAATTTGTAGAGACCCCGGCGGGCC
CGGGCCTGCCATCCCTTAGCCCCGCCACACCAAGCTGGCCCTCCTCCCACCTTCAGGGGAGGAG
GACCATGCAGCTAACCCACCCACCAAAGACTCTCCCCTCATCTGCCTCCTCGGGCTGGACCCTC
CAACGCCAGCGACTCCCAGGAGCCCTTGGGGGGCCTGAGGGGAGCCCTTCACATTCACAATTCC
TCCTCCTGCCCCAGCCTCCTGTCTGTCCCAGGGTCTCTGTTGCCACCATCAGATTATAAGCTCC
TGACGCTGGGGGGGCCCAGCCATCCCCCTCCCCCCAGTGCCCACACTTTTCAGTATCCCCACCT
CTGCCCTGTTTTGTATGACCCTCCCCTGACCTTGTCCTACCCCACAGTATTTAATGCCCTGTCA
GTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGTATTTGAATTTTTTATAGATGTATATACAG
GGGTGGGAGGGTTGGGGGGGTTCTCATTAAACGTCACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_021726936 ⟹ XP_021582611

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,115,145 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,662,742 (-)	NCBI

Sequence:

show sequence

GCCGGGGCTGCCGGGGCCCCAGCCCTGAGCCCCGGGGACCCGATGCCCGCGGGCGGCCGAGCGG
ACCCACGGAGCGCCGGAGGCATCGACGGGCGCCTGCGCGGGGACCCAGGGCCTCCTTCATGATG
GCTGCTCCTGTCCCATGGGCCTGCTGTGCTGTGCTTGCTGCCGCTGCTGCCGTTGTCTACACCC
AAAGACACAGTCCACAGGAGACGCCCCATGTGCAGTATGAGCGCCTGGGATCAGATGTGACATT
GCCATGTGGAACAGCAAATTGGGATGCAGCTGTGACGTGGCGGGTGAATGGAACAGATCTGGCC
CCTGACCTGCTCAATGGCTCTCAACTGGTACTCCGTGGCCTGGATCTGGGCCACAGTGGCCTCT
ACGCCTGCTTCCACCGTGACTCCTGGCACCTGCGCCACCAAGTCCTGCTACATGTGGGCTTGCC
ACCACGGGAACCTGTGCTTAGCTGCCGCTCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGG
CATCTGCCCACCCCCACCTACATCCCAAACACCTTCAATGTGACTGTGCTGCACGGCTCCAAAA
TTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCTGCCACATCCGATACATGCACCTGTT
CTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAATGCTCTGGGTCACAACGCCACGGCT
ATCACCTTTGATGAGTTCACCATTGTGAAGCCTGACCCTCCAGAAAATGTGGTAGCCCGGCCAG
TGCCTAGCAACCCTCGTCGGCTGGAGGTGACGTGGCAGACCCCCTCGACTTGGCCTGACCCTGA
GTCCTTTCCTCTGAAGTTCTTTTTGCGTTACCGGCCCCTCATCCTGGACCAGTGGCAGCATGTG
GAGCTGTCTGATGGCACAGCACATACCATCACAGATGCCTATGCTGGGAAGGAGTACATTATCC
AGGTGGCAGCCAAGGACAATGAGATTGGGACATGGAGCGACTGGAGCGTGGCTGCTCATGCCAC
CCCCTGGACTGAGGAACCACGACACCTCACCACCGAGGCCCAGGCCCCGGAGACCACGACCAGC
ACTACCAGCTCACTGGCACCCCCGCCCACCACGAAGATCTGTGACCCTGGGGAGCTGGGCAGCG
GCGGAGGACCCTCGGTACCCTTCTTGATCAGTGTCCCTGTCACTCTGGCCCTGGCTGCCGCTGC
CGCCACTGCCAACAGTCTCCTGATCTGAACCCGGCATCCCATGAGGACATGCCAGAGCACTGCA
GAGGAGCAGGAGGCCGGAGCTGAGCCTGCAGACCCCGGTTTCTATTTTGCACACGGGCAGGAGG
ACCTTTTGCATTCTCTTCAGAAACAATTTGTAGAGACCCCGGCGGGCCCGGGCCTGCCATCCCT
TAGCCCCGCCACACCAAGCTGGCCCTCCTCCCACCTTCAGGGGAGGAGGACCATGCAGCTAACC
CACCCACCAAAGACTCTCCCCTCATCTGCCTCCTCGGGCTGGACCCTCCAACGCCAGCGACTCC
CAGGAGCCCTTGGGGGGCCTGAGGGGAGCCCTTCACATTCACAATTCCTCCTCCTGCCCCAGCC
TCCTGTCTGTCCCAGGGTCTCTGTTGCCACCATCAGATTATAAGCTCCTGACGCTGGGGGGGCC
CAGCCATCCCCCTCCCCCCAGTGCCCACACTTTTCAGTATCCCCACCTCTGCCCTGTTTTGTAT
GACCCTCCCCTGACCTTGTCCTACCCCACAGTATTTAATGCCCTGTCAGTCCCTTCTAGTCTGA
CTCAATGGTAACTTGCTGTATTTGAATTTTTTATAGATGTATATACAGGGGTGGGAGGGTTGGG
GGGGTTCTCATTAAACGTCACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_021726938 ⟹ XP_021582613

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,115,188 (-)	NCBI
SpeTri2.0	NW_004936524	2,636,166 - 2,662,742 (-)	NCBI

Sequence:

show sequence

GCCGGGGCTGCCGGGGCCCCAGCCCTGAGCCCCGGGGACCCGATGCCCGCGGGCGGCCGAGCGG
ACCCACGGAGCGCCGGAGGCATCGACGGGCGCCTGCGCGGGGACCCAGATGGCTGCTCCTGTCC
CATGGGCCTGCTGTGCTGTGCTTGCTGCCGCTGCTGCCGTTGTCTACACCCAAAGACACAGTCC
ACAGGAGACGCCCCATGTGCAGTATGAGCGCCTGGGATCAGATGTGACATTGCCATGTGGAACA
GCAAATTGGGATGCAGCTGTGACGTGGCGGGTGAATGGAACAGATCTGGCCCCTGACCTGCTCA
ATGGCTCTCAACTGGTACTCCGTGGCCTGGATCTGGGCCACAGTGGCCTCTACGCCTGCTTCCA
CCGTGACTCCTGGCACCTGCGCCACCAAGTCCTGCTACATGTGGGCTTGCCACCACGGGAACCT
GTGCTTAGCTGCCGCTCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGGCATCTGCCCACCC
CCACCTACATCCCAAACACCTTCAATGTGACTGTGCTGCACGGCTCCAAAATTATGGTCTGTGA
GAAGGACCCAGCCCTCAAGAACCGCTGCCACATCCGATACATGCACCTGTTCTCAACCATCAAG
TACAAGGTCTCCATAAGTGTCAGCAATGCTCTGGGTCACAACGCCACGGCTATCACCTTTGATG
AGTTCACCATTGTGAAGCCTGACCCTCCAGAAAATGTGGTAGCCCGGCCAGTGCCTAGCAACCC
TCGTCGGCTGGAGGTGACGTGGCAGACCCCCTCGACTTGGCCTGACCCTGAGTCCTTTCCTCTG
AAGTTCTTTTTGCGTTACCGGCCCCTCATCCTGGACCAGTGGCAGCATGTGGAGCTGTCTGATG
GCACAGCACATACCATCACAGATGCCTATGCTGGGAAGGAGTACATTATCCAGGTGGCAGCCAA
GGACAATGAGATTGGGACATGGAGCGACTGGAGCGTGGCTGCTCATGCCACCCCCTGGACTGAG
GAACCACGACACCTCACCACCGAGGCCCAGGCCCCGGAGACCACGACCAGCACTACCAGCTCAC
TGGCACCCCCGCCCACCACGAAGATCTGTGACCCTGGGGAGCTGGGCAGCGGCGGAGGACCCTC
GGTACCCTTCTTGATCAGTGTCCCTGTCACTCTGGCCCTGGCTGCCGCTGCCGCCACTGCCAAC
AGTCTCCTGATCTGAACCCGGCATCCCATGAGGACATGCCAGAGCACTGCAGAGGAGCAGGAGG
CCGGAGCTGAGCCTGCAGACCCCGGTTTCTATTTTGCACACGGGCAGGAGGACCTTTTGCATTC
TCTTCAGAAACAATTTGTAGAGACCCCGGCGGGCCCGGGCCTGCCATCCCTTAGCCCCGCCACA
CCAAGCTGGCCCTCCTCCCACCTTCAGGGGAGGAGGACCATGCAGCTAACCCACCCACCAAAGA
CTCTCCCCTCATCTGCCTCCTCGGGCTGGACCCTCCAACGCCAGCGACTCCCAGGAGCCCTTGG
GGGGCCTGAGGGGAGCCCTTCACATTCACAATTCCTCCTCCTGCCCCAGCCTCCTGTCTGTCCC
AGGGTCTCTGTTGCCACCATCAGATTATAAGCTCCTGACGCTGGGGGGGCCCAGCCATCCCCCT
CCCCCCAGTGCCCACACTTTTCAGTATCCCCACCTCTGCCCTGTTTTGTATGACCCTCCCCTGA
CCTTGTCCTACCCCACAGTATTTAATGCCCTGTCAGTCCCTTCTAGTCTGACTCAATGGTAACT
TGCTGTATTTGAATTTTTTATAGATGTATATACAGGGGTGGGAGGGTTGGGGGGGTTCTCATTA
AACGTCACCATTTCATGAG

hide sequence

RefSeq Acc Id:

XM_040285952 ⟹ XP_040141886

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,127,035 (-)	NCBI

RefSeq Acc Id:

XM_040285953 ⟹ XP_040141887

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,118,418 (-)	NCBI

RefSeq Acc Id:

XM_040285954 ⟹ XP_040141888

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,127,184 (-)	NCBI

RefSeq Acc Id:

XM_040285955 ⟹ XP_040141889

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	166,088,587 - 166,119,481 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326271	(Get FASTA)	NCBI Sequence Viewer
	XP_005326272	(Get FASTA)	NCBI Sequence Viewer
	XP_013214525	(Get FASTA)	NCBI Sequence Viewer
	XP_021582609	(Get FASTA)	NCBI Sequence Viewer
	XP_021582610	(Get FASTA)	NCBI Sequence Viewer
	XP_021582611	(Get FASTA)	NCBI Sequence Viewer
	XP_021582613	(Get FASTA)	NCBI Sequence Viewer
	XP_040141886	(Get FASTA)	NCBI Sequence Viewer
	XP_040141887	(Get FASTA)	NCBI Sequence Viewer
	XP_040141888	(Get FASTA)	NCBI Sequence Viewer
	XP_040141889	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002490.2
	ENSSTOP00000031234.1
GenBank Protein	KAG3287417	(Get FASTA)	NCBI Sequence Viewer
	KAG3287418	(Get FASTA)	NCBI Sequence Viewer
	KAG3287419	(Get FASTA)	NCBI Sequence Viewer
	KAG3287420	(Get FASTA)	NCBI Sequence Viewer
	KAG3287421	(Get FASTA)	NCBI Sequence Viewer
	KAG3287422	(Get FASTA)	NCBI Sequence Viewer
	KAG3287423	(Get FASTA)	NCBI Sequence Viewer
	KAG3287424	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013214525 ⟸ XM_013359071

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTD
LAPDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYC
SWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNA
TAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQ
HVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETT
TSTTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI

hide sequence

RefSeq Acc Id:	XP_005326272 ⟸ XM_005326215
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDL APDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCS WHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNAT AITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH VELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETTT STTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI hide sequence

RefSeq Acc Id:

XP_005326271 ⟸ XM_005326214

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTD
LAPDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYC
SWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNA
TAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQ
HVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETT
TSTTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI

hide sequence

RefSeq Acc Id:	XP_021582613 ⟸ XM_021726938
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDL APDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCS WHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNAT AITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH VELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETTT STTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI hide sequence

RefSeq Acc Id:

XP_021582611 ⟸ XM_021726936

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTD
LAPDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYC
SWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNA
TAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQ
HVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETT
TSTTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI

hide sequence

RefSeq Acc Id:

XP_021582610 ⟸ XM_021726935

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEPYQAPFRMGASGPQLHLEWQVMAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSD
VTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHV
GLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYM
HLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWP
DPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAA
HATPWTEEPRHLTTEAQAPETTTSTTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALA
AAAATANSLLI

hide sequence

RefSeq Acc Id:

XP_021582609 ⟸ XM_021726934

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMAAPVPWACCAVLAAAAAVVYTQRHSPQETPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTD
LAPDLLNGSQLVLRGLDLGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYC
SWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNA
TAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQ
HVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETT
TSTTSSLAPPPTTKICDPGELGSGGGPSVPFLISVPVTLALAAAAATANSLLI

hide sequence

RefSeq Acc Id:	XP_040141888 ⟸ XM_040285954
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040141886 ⟸ XM_040285952
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040141889 ⟸ XM_040285955
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040141887 ⟸ XM_040285953
- Peptide Label:	isoform X5
- UniProtKB:	I3M137 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000031234 ⟸ ENSSTOT00000036813

RefSeq Acc Id:

ENSSTOP00000002490 ⟸ ENSSTOT00000002783

Protein Domains

Fibronectin type-III Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002791	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002783.3	UniProtKB/TrEMBL
	ENSSTOT00000036813.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Hematopoietin_rcpt_L_F3_CS	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
NCBI Gene	Cntfr	ENTREZGENE
PANTHER	CILIARY NEUROTROPHIC FACTOR RECEPTOR SUBUNIT ALPHA	UniProtKB/TrEMBL
	CYTOKINE RECEPTOR	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	HEMATOPO_REC_L_F3	UniProtKB/TrEMBL
	IG_LIKE	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF49265	UniProtKB/TrEMBL
UniProt	A0A287DCH1_ICTTR	UniProtKB/TrEMBL
	I3M137	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar