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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neoplastic Cell Transformation | | ISO | RGD:1317138 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:24747640 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neoplastic Cell Transformation | | ISO | RGD:1317138 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:24747640 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Nucleotide excision repair: new tricks with old bricks. | Kamileri I, etal., Trends Genet. 2012 Nov;28(11):566-73. doi: 10.1016/j.tig.2012.06.004. Epub 2012 Jul 22. |
4. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
5. | GOA pipeline | RGD automated data pipeline |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
7. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
PMID:11133167 | PMID:12660172 | PMID:16466397 | PMID:16780588 | PMID:21278158 | PMID:22736760 |
Hmgn1 (Rattus norvegicus - Norway rat) |
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HMGN1 (Homo sapiens - human) |
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Hmgn1 (Mus musculus - house mouse) |
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Hmgn1 (Chinchilla lanigera - long-tailed chinchilla) |
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HMGN1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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HMGN1 (Canis lupus familiaris - dog) |
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Hmgn1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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HMGN1 (Sus scrofa - pig) |
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HMGN1 (Chlorocebus sabaeus - green monkey) |
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Hmgn1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Hmgn1
36 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129914 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | nervous system | renal system | reproductive system | respiratory system | |
High | ||||||||||
Medium | ||||||||||
Low | 1 | |||||||||
Below cutoff | 1 | 2 | 1 | 1 | 3 | 1 | 7 | 6 | 9 | 1 |
RefSeq Transcripts | NM_001013184 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AC112406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC142178 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC086423 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474083 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ220876 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ230156 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JACYVU010000222 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000075126 ⟹ ENSRNOP00000065878 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000075762 ⟹ ENSRNOP00000067432 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000094497 ⟹ ENSRNOP00000076505 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001013184 ⟹ NP_001013202 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001013202 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH86423 | (Get FASTA) | NCBI Sequence Viewer |
EDL76666 | (Get FASTA) | NCBI Sequence Viewer | |
EDL76667 | (Get FASTA) | NCBI Sequence Viewer | |
EDL76668 | (Get FASTA) | NCBI Sequence Viewer | |
EDL76669 | (Get FASTA) | NCBI Sequence Viewer | |
EDL76670 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001013202 ⟸ NM_001013184 |
- UniProtKB: | Q5U1W8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000067432 ⟸ ENSRNOT00000075762 |
RefSeq Acc Id: | ENSRNOP00000065878 ⟸ ENSRNOT00000075126 |
RefSeq Acc Id: | ENSRNOP00000076505 ⟸ ENSRNOT00000094497 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5U1W8-F1-model_v2 | AlphaFold | Q5U1W8 | 1-96 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13698086 | ||||||||
Promoter ID: | EPDNEW_R8611 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Hmgn1_1 | ||||||||
Description: | high mobility group nucleosome binding domain 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1307761 | AgrOrtholog |
BioCyc Gene | G2FUF-21713 | BioCyc |
Ensembl Genes | ENSRNOG00000048226 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOG00000050978 | Ensembl | |
Ensembl Protein | ENSRNOP00000065878 | ENTREZGENE |
ENSRNOP00000065878.2 | UniProtKB/TrEMBL | |
ENSRNOP00000067432.2 | UniProtKB/TrEMBL | |
ENSRNOP00000076505.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000075126 | ENTREZGENE |
ENSRNOT00000075126.2 | UniProtKB/TrEMBL | |
ENSRNOT00000075762.3 | UniProtKB/TrEMBL | |
ENSRNOT00000094497.1 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7302011 | IMAGE-MGC_LOAD |
InterPro | HMG14/HMG17 | UniProtKB/TrEMBL |
KEGG Report | rno:360704 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:105952 | IMAGE-MGC_LOAD |
NCBI Gene | 360704 | ENTREZGENE |
Pfam | HMG14_17 | UniProtKB/TrEMBL |
PhenoGen | Hmgn1 | PhenoGen |
PRINTS | NONHISHMG17 | UniProtKB/TrEMBL |
PROSITE | HMG14_17 | UniProtKB/TrEMBL |
SMART | HMG17 | UniProtKB/TrEMBL |
UniProt | A0A8I5Y8Y4_RAT | UniProtKB/TrEMBL |
M0R8S8_RAT | UniProtKB/TrEMBL | |
M0RCU8_RAT | UniProtKB/TrEMBL | |
Q5U1W8 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Hmgn1 | high mobility group nucleosome binding domain 1 | LOC100911295 | non-histone chromosomal protein HMG-14-like | Data Merged | 737654 | PROVISIONAL |
2013-03-12 | Hmgn1 | high mobility group nucleosome binding domain 1 | Hmgn1 | high-mobility group nucleosome binding domain 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2012-07-05 | LOC100911295 | non-histone chromosomal protein HMG-14-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-09-24 | Hmgn1 | high-mobility group nucleosome binding domain 1 | Hmgn1 | high mobility group nucleosomal binding domain 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Hmgn1 | high mobility group nucleosomal binding domain 1 | Hmgn1_predicted | high mobility group nucleosomal binding domain 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Hmgn1_predicted | high mobility group nucleosomal binding domain 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |