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Gene: Taf1 (TATA-box binding protein associated factor 1) Rattus norvegicus

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Symbol:

Taf1

Name:

TATA-box binding protein associated factor 1

RGD ID:

1562050

Description:

Predicted to enable several functions, including RNA polymerase I general transcription initiation factor activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and general transcription initiation factor binding activity. Predicted to contribute to H3K27me3 modified histone binding activity and histone reader activity. Involved in response to xenobiotic stimulus. Predicted to be located in chromatin and nucleus. Predicted to be part of MLL1 complex and transcription factor TFIID complex. Human ortholog(s) of this gene implicated in X-linked dystonia-parkinsonism and syndromic X-linked intellectual disability. Orthologous to human TAF1 (TATA-box binding protein associated factor 1); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC102556339; LOC317256; RGD1562050; similar to CCG1; TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor; transcription initiation factor TFIID subunit 1; transcription initiation factor TFIID subunit 1-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	70,680,901 - 70,756,535 (+)	NCBI		GRCr8
mRatBN7.2	X	66,640,915 - 66,716,543 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	66,640,982 - 66,716,543 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	68,124,339 - 68,199,897 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	71,624,742 - 71,700,095 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	69,185,648 - 69,261,210 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	71,412,291 - 71,486,456 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	71,412,289 - 71,485,085 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	72,261,626 - 72,335,791 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	89,590,556 - 89,666,569 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	66,996,430 - 67,071,877 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

autosomal hemophilia A (ISO)

congenital heart disease (ISO)

factor VIII deficiency (ISO)

FG Syndrome 1 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

syndromic X-linked intellectual disability 33 (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked dystonia-parkinsonism (ISO)

X-linked severe combined immunodeficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrolein (ISO)

alpha-pinene (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

doxorubicin (EXP,ISO)

epoxomicin (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

L-methionine (ISO)

methapyrilene (EXP)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

ozone (ISO)

paclitaxel (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylephrine (EXP)

PhIP (ISO)

resveratrol (EXP,ISO)

silicon dioxide (ISO)

tetraphene (ISO)

thapsigargin (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to ATP (ISO)

cellular response to UV (ISO)

chromatin remodeling (IEA)

DNA damage response (ISO)

midbrain development (ISO)

mRNA transcription by RNA polymerase II (ISO)

negative regulation of gene expression (ISO)

negative regulation of protein autoubiquitination (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

negative regulation of ubiquitin-dependent protein catabolic process (ISO)

peptidyl-serine phosphorylation (ISO)

peptidyl-threonine phosphorylation (ISO)

positive regulation of androgen receptor activity (ISO)

positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription initiation by RNA polymerase II (ISO)

protein autophosphorylation (ISO)

protein phosphorylation (ISO)

protein polyubiquitination (ISO)

protein stabilization (ISO)

response to xenobiotic stimulus (IEP)

RNA polymerase II preinitiation complex assembly (IBA,ISO)

transcription by RNA polymerase II (ISO)

transcription initiation at RNA polymerase I promoter (ISO)

transcription initiation at RNA polymerase II promoter (ISO)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

chromatin (ISO)

MLL1 complex (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

pronucleus (ISO)

transcription factor TFIID complex (IBA,ISO)

transcription regulator complex (ISO)

Molecular Function

acetyl-CoA binding (ISO)

DNA binding (ISO)

histone acetyltransferase activity (ISO)

histone H3K27me3 reader activity (ISO)

histone H4K16ac reader activity (ISO)

histone reader activity (ISO)

kinase activity (ISO)

nuclear receptor binding (ISO)

p53 binding (ISO)

promoter-specific chromatin binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein kinase activity (ISO)

protein serine/threonine kinase activity (ISO)

RNA polymerase I general transcription initiation factor activity (ISO)

RNA polymerase II core promoter sequence-specific DNA binding (ISO)

RNA polymerase II general transcription initiation factor activity (IBA,ISO)

RNA polymerase II general transcription initiation factor binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (ISO)

TBP-class protein binding (IBA,ISO)

transcription regulator inhibitor activity (ISO)

ubiquitin conjugating enzyme activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

RNA polymerase II transcription initiation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structural bioinformatics of the general transcription factor TFIID.	Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
2.	Immunohistochemical study of TAFII250 in the rat laryngeal nervous system.	Okano H, etal., Histol Histopathol. 2005 Oct;20(4):1029-35.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	Readout of epigenetic modifications.	Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	TAFII250, Egr-1, and D-type cyclin expression in mice and neonatal rat cardiomyocytes treated with doxorubicin.	Saadane N, etal., Am J Physiol. 1999 Mar;276(3 Pt 2):H803-14.
9.	The bromodomain: From epigenome reader to druggable target.	Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.

Additional References at PubMed

PMID:8625415	PMID:8980232	PMID:9660973	PMID:11592977	PMID:12498690	PMID:14580349	PMID:15053879	PMID:15607978	PMID:15960975	PMID:16822332	PMID:17237821	PMID:17996705
PMID:18548200	PMID:18722179	PMID:20181722	PMID:21616129	PMID:22323595	PMID:24289924	PMID:24927529	PMID:25412659	PMID:26637982	PMID:27007846	PMID:31344492	PMID:34403156

Genomics

Comparative Map Data

Taf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	70,680,901 - 70,756,535 (+)	NCBI		GRCr8
mRatBN7.2	X	66,640,915 - 66,716,543 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	66,640,982 - 66,716,543 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	68,124,339 - 68,199,897 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	71,624,742 - 71,700,095 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	69,185,648 - 69,261,210 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	71,412,291 - 71,486,456 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	71,412,289 - 71,485,085 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	72,261,626 - 72,335,791 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	89,590,556 - 89,666,569 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	66,996,430 - 67,071,877 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

TAF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	71,366,357 - 71,530,525 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	71,366,136 - 71,532,374 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	70,586,207 - 70,750,375 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	70,502,839 - 70,601,025 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	70,369,134 - 70,467,321	NCBI
Celera	X	70,939,992 - 71,039,729 (+)	NCBI		Celera
Cytogenetic Map	X	q13.1	NCBI
HuRef	X	64,401,859 - 64,501,671 (+)	NCBI		HuRef
CHM1_1	X	70,479,138 - 70,579,043 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	69,800,459 - 69,963,776 (+)	NCBI		T2T-CHM13v2.0

Taf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	100,576,335 - 100,644,635 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	100,576,279 - 100,644,640 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	101,527,572 - 101,601,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	101,532,734 - 101,601,789 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	98,728,074 - 98,797,128 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	97,735,454 - 97,804,508 (+)	NCBI		MGSCv36	mm8
Celera	X	88,450,587 - 88,519,292 (+)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	44.29	NCBI

Taf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	10,930,192 - 11,005,724 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	10,930,175 - 11,006,876 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	71,039,480 - 71,139,385 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	71,043,123 - 71,142,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	60,630,137 - 60,729,904 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	70,684,192 - 70,784,292 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	70,684,217 - 70,782,323 (+)	Ensembl	panpan1.1		panPan2

TAF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	55,693,091 - 55,764,268 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	55,693,194 - 55,763,683 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	46,519,902 - 46,591,035 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	56,662,169 - 56,733,328 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	56,662,183 - 56,732,743 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	54,629,611 - 54,700,758 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	55,961,540 - 56,032,713 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	55,888,952 - 55,960,089 (+)	NCBI		UU_Cfam_GSD_1.0

Taf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	46,427,534 - 46,509,580 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936762	189,710 - 271,759 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	57,382,354 - 57,466,697 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	57,382,211 - 57,466,700 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TAF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	61,167,743 - 61,269,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	61,167,589 - 61,268,839 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	3,030,320 - 3,130,765 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624903	1,698,201 - 1,774,607 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Taf1
129 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	761
Count of miRNA genes:	303
Interacting mature miRNAs:	410
Transcripts:	ENSRNOT00000003494
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Markers in Region

RH131488

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	66,715,633 - 66,715,832 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	71,485,547 - 71,485,745	NCBI	Rnor6.0
Rnor_5.0	X	72,334,882 - 72,335,080	UniSTS	Rnor5.0
RGSC_v3.4	X	89,665,660 - 89,665,858	UniSTS	RGSC3.4
Celera	X	67,070,968 - 67,071,166	UniSTS
Cytogenetic Map	X	q31	UniSTS

AI548344

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	66,660,107 - 66,660,296 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	72,708,987 - 72,709,175	NCBI	Rnor6.0
Rnor_6.0	X	71,431,417 - 71,431,605	NCBI	Rnor6.0
Rnor_5.0	X	72,280,752 - 72,280,940	UniSTS	Rnor5.0
Rnor_5.0	X	73,544,320 - 73,544,508	UniSTS	Rnor5.0
RGSC_v3.4	X	89,609,682 - 89,609,870	UniSTS	RGSC3.4
Celera	X	67,015,557 - 67,015,745	UniSTS
Cytogenetic Map	X	q31	UniSTS

px-35c7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	66,650,626 - 66,650,791 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	71,421,936 - 71,422,100	NCBI	Rnor6.0
Rnor_5.0	X	72,271,271 - 72,271,435	UniSTS	Rnor5.0
RGSC_v3.4	X	89,600,201 - 89,600,365	UniSTS	RGSC3.4
Celera	X	67,006,075 - 67,006,239	UniSTS
Cytogenetic Map	X	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	66,640,982 - 66,716,543 (+)	Ensembl
Rnor_6.0 Ensembl	X	71,412,303 - 71,484,890 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	66,641,269 - 66,716,543 (+)	Ensembl
Rnor_6.0 Ensembl	X	71,412,289 - 71,485,085 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	72,705,039 - 72,713,249 (+)	Ensembl

RefSeq Acc Id:

NM_001191723 ⟹ NP_001178652

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,977 - 70,756,535 (+)	NCBI
mRatBN7.2	X	66,640,982 - 66,716,543 (+)	NCBI
Rnor_6.0	X	71,412,291 - 71,486,456 (+)	NCBI
Rnor_5.0	X	72,261,626 - 72,335,791 (+)	NCBI
Celera	X	66,996,430 - 67,071,877 (+)	NCBI

Sequence:

show sequence

TGTTTCCGGCCCATGGGGCCAGGGTGGGCTGGACTGCTGCCCGAAGACGGTTCTGGTAGCCCTT
CCGCCGTCATGTCAGACACAGACAGCGATGAAGATTCTGCTGGTGGAGGCCCGTTTTCTTTGAC
TGGGTTCCTGTTCGGCAACATAAATGGAGCAGGGCAGCTGGAGGGTGAAAGCGTCTTGGACGAT
GAGTGCAAGAAGCATCTTGCAGGCTTGGGGGCATTGGGCCTTGGTAGCCTGATCACTGAACTCA
CAGCAAATGAAGAATTGTCTGGGACTGATGGTACCCTGGTAAATGATGAAGGATGGATTAGGAG
TAGAGAAGATGCTGTGGACTACTCAGACATCAACGAGGTGGCAGAAGATGAAAGTCGAAGATAT
CAGCAGACAATGGGGAGCTTGCAACCCCTTTGCCACACAGATTATGATGAAGATGACTATGATG
CTGATTGTGAAGATATTGATTGCAAATTGATGCCTCCCCCACCTCCACCCCCAGGACCAGTGAA
GAAAGAGAGGGACCAAGATGGTATTACTGGTGTGTCTGAAGATGGAGAAGGCATCATCTTGCCC
TCCATCATTGCCCCTTCCTCTTTGGCCTCAGAGAAAGTGGACTTCAGTAGTTCCTCTGACTCAG
AATCTGAGATGGGACCTCAGGAAGCAACACAGTCAGAATCTAAGGATGGAAAGCTGACCCTACC
ATTGGCTGGGATTATGCAGCATGATGCCACCAAGCTGTTGCCAAGTGTCACAGAACTTTTTCCA
GAATTTAGACCTGGAAAGGTGTTACGCTTTTTACGGCTTTTTGGACCAGGGAAGAATGTCCCAT
CTGTTTGGAGGAGTGCTCGGAGAAAGAGGAAAAAGAAGCACCGTGAACTTATACAGGAAGAGCA
GATCCAGGAAGAGGAGTGTTCAGTAGAATTAGAAGTCAACCAGAAATCTCTGTGGAACTATGAC
TATGCTCCACCACCACTTCCAGAGCAGTGTCTCTCTGATGATGAAATCACAATGATGGCTCCTG
TGGAGTCCAAGTTTTCCCAGTCAACTGGAGATACAGATAAAGTAATGGATACCAAACCAAGAGT
GGCAGAATGGCGTTATGGACCTGCCCGGCTATGGTATGATATGCTAGGTGTTCCTGAAGATGGC
AGTGGCTTTGACTATGGCTTCAAAATGAAGAAGACTGAACATGACTCTACAATGAAATATAACA
TAATGAAGAAACTAAGAAAACTTGAGGAAAACAATGGCGTTGATCTTCTGGCAGATGAAAACTT
CCTAATGGTGACACAACTGCATTGGGAAGATGATATCATCTGGGATGGGGAGGATGTCAAACAC
AAAGGAACAAAACCTCAGCGTGCAAGTTTGGCAGGTTGGCTTCCCTCCAGTATGACTAGGAATG
CCATGGCCTACAATGTTCAGCAAGGTTTTACAGCTACATTGGATGATGATAAACCATGGTACTC
CATTTTCCCCATTGATAATGAAGATCTGGTATATGGACGTTGGGAGGACAATATCATTTGGGAT
GCTCAGAACATGCCTAGGATTTTGGAGCCTCCTGTTTTGACACTTGATCCCAATGATGAGAACT
TGATTTTGGAGATCCCCGATGAGAAGGAAGAAGCTACTTCTAATTCCCCTTCTAAGGAGAATAA
GAAAGAATCATCTCTGAAGAAGAGTCGAATTCTCTTGGGAAAAACAGGAGTTATCAAGGAAGAG
CCACAGCAGAACATGTCTCAGCCAGAAGTGAAAGATCCATGGAATCTCTCCAATGATGAGTATT
ACTATCCCAAGCAACAGGGTCTTCGAGGTACTTTCGGAGGGAATATTATCCAGCACTCAATTCC
AGCTGTAGAATTACGGCAGCCCTTCTTTCCCACCCACATGGGACCCATCAAACTCCGGCAGTTC
CATCGCCCACCTCTAAAAAAGTACTCCTTTGGGGCACTATCTCAGCCAGGCCCACACTCAGTCC
AGCCTTTGTTGAAGCATATCAAAAAGAAGGCCAAGATGAGAGAACAAGAGAGACAAGCCTCGGG
TGGTGGAGAGATGTTTTTTATGCGTACACCTCAGGACCTTACAGGCAAAGATGGAGACCTTATT
CTTGCTGAATACAGTGAAGAAAATGGACCATTAATGATGCAAGTTGGCATGGCAACTAAGATAA
AAAACTACTATAAACGGAAACCTGGAAAAGATCCTGGAGCCCCAGATTGCAAATATGGAGAAAC
TGTTTATTGTCATACATCACCTTTCCTGGGTTCTCTTCATCCTGGCCAGTTACTGCAGGCATTT
GAAAACAACCTTTTTCGTGCTCCAATTTATCTTCATAAGATGCCAGAGTCTGACTTCCTGATCA
TTCGCACAAGGCAGGGTTACTATATTCGAGAATTGGTGGATATTTTTGTTGTGGGCCAGCAGTG
TCCCTTGTTTGAAGTTCCTGGTCCTAATTCCAAAAGGGCCAATACACACATCAGAGACTTTCTG
CAGGTTTTTATTTACCGGCTCTTTTGGAAGAGTAAAGATAGGCCACGGAGGATACGGATGGAAG
ATATAAAGAAAGCCTTTCCTTCACATTCAGAAAGCAGCATCCGGAAGAGGCTAAAGCTCTGTGC
TGACTTCAAACGTACAGGGATGGATTCAAACTGGTGGGTGCTGAAGTCTGATTTTCGTTTACCA
ACGGAAGAGGAGATCAGAGCTATGGTCTCTCCAGAACAGTGCTGTGCTTATTATAGCATGATAG
CTGCAGAACAGAGACTAAAGGATGCTGGCTATGGAGAGAAGTCCTTTTTTGCTCCTGAGGAAGA
AAATGAAGAAGATTTCCAGATGAAGATTGATGATGAAGTTCGTACTGCTCCTTGGAATACTACA
AGGGCTTTCATTGCTGCCATGAAGGGCAAATGTCTCCTGGAGGTGACTGGAGTAGCAGATCCTA
CAGGTTGTGGTGAAGGGTTCTCCTATGTGAAGATTCCAAACAAACCAACACAGCAGAAGGATGA
TAAGGAGCCTCAGCCAGTGAAGAAAACAGTCACAGGAACAGATGCAGACCTTCGTCGCCTATCT
TTGAAAAATGCCAAGCAACTTCTTCGTAAATTTGGTGTGCCTGAGGAAGAGATTAAAAAGTTGT
CCCGCTGGGAAGTTATTGATGTGGTACGCACAATGTCAACAGAACAGGCTCGTTCCGGAGAGGG
GCCCATGAGTAAATTTGCTCGTGGATCAAGGTTTTCTGTGGCTGAGCATCAAGAACGTTACAAA
GAGGAATGTCAGCGCATCTTTGACCTACAGAACAAGGTTTTGTCTTCAACAGAGGTCTTATCAA
CTGACACAGACAGCAGCTCAGCTGAAGACAGTGACTTTGAAGAAATGGGAAAAAACATTGAGAA
TATGCTGCAGAACAAGAAAACAAGCTCTCAGCTGTCCAGGGAACGGGAGGAGCAGGAACGAAAG
GAACTCCAGCGGATGCTACTGGCAGCAGGCTCGGCAGCAGGAGGAAACAACCACAGAGATGATG
ACACAGCCTCGGTGACTAGCCTTAACTCTTCTGCCACTGGCCGCTGTCTCAAGATTTATCGAAC
ATTTCGAGATGAGGAGGGGAAGGAATATGTTCGTTGTGAGACAGTCCGAAAAGCAGCTGTTATT
GATGCTTATGTACGCATACGGACCACAAAAGATGAAGAATTCATTCGAAAATTTGCCCTTTTTG
ATGAGCAACACCGAGAAGAGATGAGAAAAGAACGGCGGAGGATTCAGGAGCAACTGAGGAGACT
TAAACGAAACCAGGAAAAGGAGAAACTGAAGGGTCCTCCTGAGAAAAAGCCCAAAAAGATGAAG
GAACGTCCTGACTTAAAACTAAAATGTGGAGCATGTGGTGCAATTGGACACATGAGGACAAATA
AATTCTGCCCTCTTTATTATCAAACAAATGCACCACCTTCTAATCCTGTTGCAATGACAGAGGA
ACAGGAAGAAGAGCTGGAAAAGACAGTCATTCACAATGATAATGAAGAACTTATCAAGGTCGAA
GGGACCAAGATCGTTTTGGGAAAACAGCTAATTGAGAGTGCGGATGAAGTACGCAGAAAATCTC
TGGTTCTGAAGTTCCCTAAACAACAACTTCCTCCCAAGAAAAAGCGTCGGGTTGGAACCACTGT
TCACTGTGACTATTTGAATAGACCTCATAAATCCATCCACCGACGCCGGACAGACCCTATGGTG
ACACTGTCTTCTATCTTGGAATCTATTATCAATGACATGAGAGATCTTCCAAATACATACCCTT
TCCATACTCCAGTTAATGCAAAAGTTGTAAAGGATTACTACAAAATCATCACTCGGCCAATGGA
TCTACAAACACTCCGTGAAAATGTGCGCAAACGTCTTTATCCATCTCGAGAAGAATTCAGAGAA
CATTTGGAATTAATTGTGAAAAATAGTGCAACTTATAATGGGCCAAAACATTCACTGACTCAGA
TTTCTCAATCCATGCTGGATCTCTGTGATGAAAAACTCAAAGAGAAAGAGGATAAGTTGGCACG
TTTAGAGAAAGCTATCAACCCCTTGCTTGATGATGATGATCAAGTAGCATTTTCTTTTATTCTG
GATAACATTGTCACTCAGAAAATGATGGCAGTTCCAGATTCTTGGCCATTTCATCACCCAGTTA
ATAAGAAGTTTGTTCCAGATTATTACAAAGTGATTGTCAATCCAATGGATTTGGAGACTATACG
TAAGAATATCTCCAAGCACAAATACCAGAGTCGAGAGAGCTTTTTAGATGATGTAAACCTGATT
CTGGCCAACAGTGTTAAGTACAATGGGCCTGAGAGTCAGTATACTAAGACTGCTCAGGAGATTG
TGAACGTTTGTCACCAGACATTAACTGAGTATGATGAACATTTGACTCAACTTGAGAAAGATAT
TTGTACAGCTAAAGAAGCAGCTCTGGAGGAAGCAGAATTAGAAAGTCTAGACCCAATGACTCCA
GGACCTTATACCCCTCAGGCTAAGCCTCCTGATTTATATGATAACAGCACATCCCTCAGTGTTT
CTCGAGATGCTTCGGTGTATCAAGATGAGAGCAATCTGTCTGTCTTGGATATTCCCAGTGCTAC
TTCAGAAAAGCAGCTAACACAGGAAGGTGGAGACGGAGATGGTGATCTTGCAGATGAAGAGGAA
GGAACTGTACAACAGCCCCAAGCCAGTGTCCTGTATGAGGATTTGCTTATGTCTGAAGGTGAAG
ATGATGAAGAAGATGCTGGGAGTGATGAAGAAGGAGATAACCCTTTCTCTGCTATTCAGCTAAG
TGAAAGTGGAAGTGACTCTGATGTGGAATCTGGCAGCATAAGACCCAAACAGCCCCGCATGCTT
CAAGAGAATACAAGGATGGGCATGGAAAATGAAGAAAGCATGATGTCCTATGAGGGAGATGGTG
GGGAGGCTTCCCGTGGTTTGGAGGATAGCAACATCAGTTATGGGAGCTATGAGGAGCCTGATCC
CAAGTCGAACACCCAGGATACAAGCTTCAGCAGCATCGGTGGGTATGAGGTATCAGAGGAGGAA
GAAGATGAGGAAGAGCAGCGCTCTGGGCCCAGCGTTCTAAGCCAGGTCCAACTCTCAGAGGACG
AGGAGGACAGTGAGGATCTCCACTCCATTGCTGGAGACAGTGACTTGGACTCTGATGAATGAGG
CTTCCTTTAAGCCTCTTCAATCAGCCTAGGCCTGTTACCTTTCCCCCAGCTTGTTTATGTGTAT
ATAGTAGCTAATAATGATATCACTAGATTAACACCTCAGTTTTAGTAATAAGTAAAATAGTAAT
TATTTCTCTAGATCATAGAGTAGCAAGTTCTTTTCCCTAAGAGAGAGCAGACTCCCTCTTCCTC
ATTATACTCCTTTAATGGCATTTATTGTTTTTGGTGTATAAACATGCCACCATTTTATTTTCTA
ATTGGTAGACTAGAATAGACGAAAACCCTTCTGCTGGTTTAGAGAATTAGGTCCTGATGGGCTG
GCTCTGTGTCACACTTAAAATGTAATCCTCTCGAACAAACTGATTGTTCATGTATTACTTACTT
GGATGGACAATGCCTTGTTGCTAAATAGATTACAGGGATGTAGCTATAAATCTGTGAAACAGCC
TATGTATCCATGTAAACGTGCTCTCTCCCATCCTAGAAAAAATTATAGGAAAACGGTTCCTTAG
GGCAATGACTGTCTTTTGTTTCTTTTTTATGCTTAGGATATGGTTTTATGCAAAGTAGCTACTC
AGTAGATGGTCTTAAAAATCACAAAATCCCAACAAATATGTTACTGTGTACCTGACTCATGCTA
AGCACTCTATCATATCCTTGGAGTGCAAAGGTTAAATAAGAGCTTGCCATCAAGTTGGGGCAGT
GAGACTGGAATTCAAGCCATGTTAATAAATCATAGAATGTAAGTACAATTAAGAAACTAGGTGT
AAAGTACAAAGAAAAGAATTAGAAGAGGTCATGTTTGGAAAGCAGAGAAGTCTTCCAGAGGCCG
CCTGAAAGCTGACTGTTGAGAAGTCGTAGATAAGTACTATCTCAAAAAGTTCAGGCAGGGTGTT
AACAGTTCACAGTCTAGATATGACAGAACGTGTTCCTTGTTTGTACCTGCCTTGTTTCAGAAAG
GATGCTGAAGTGACTAGACATGACACTGAAAGACGGACAGGAAGCATATCTTCAAGAGCTTTGC
ATTTGAGCTAGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCA
GGTGAATCTCTTGAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTG
TAAAAAAGAAACCCTGTCTCAGAAAATCAAAAGAGAGAGATAGATAACAGTGAGTAAATGTTAT
ATTTAAGAATATAAAGTCTCGAGGATTAGATTTGTTTAAGAAGTTTTCAGAATGTTGAATGAAG
ACAGAAATTGAGTCAAATAATAGACATGTATGATTCAGTTTATGTAAGACTCAAAAACTGGATG
TATATGATATGTTTATATATACTTGTATGTGCAAAGTTTTCAAAAAGATATGAAAGAATATACA
TTAAAGTATTAGCAATGATAACCTCTGAAGGATGGGAATAGAGAGGAGGTGGTTTATTTAGTTT
ATATACAGTAGGTAAGTGTTACGCTTTTATTTCTGTATCTCAATTTTATAATGTGTATTTTTTT
TTAAATAAAACTTTAATTTAACAGAGAT

hide sequence

RefSeq Acc Id:

XM_039099743 ⟹ XP_038955671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,901 - 70,756,534 (+)	NCBI
mRatBN7.2	X	66,640,994 - 66,714,977 (+)	NCBI

RefSeq Acc Id:

XM_039099745 ⟹ XP_038955673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,916 - 70,756,534 (+)	NCBI
mRatBN7.2	X	66,640,916 - 66,714,977 (+)	NCBI

RefSeq Acc Id:

XM_063280029 ⟹ XP_063136099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,916 - 70,756,534 (+)	NCBI

RefSeq Acc Id:

XM_063280030 ⟹ XP_063136100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,916 - 70,756,534 (+)	NCBI

RefSeq Acc Id:

XR_005497977

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	70,680,915 - 70,744,821 (+)	NCBI
mRatBN7.2	X	66,640,915 - 66,704,814 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178652	(Get FASTA)	NCBI Sequence Viewer
	XP_038955671	(Get FASTA)	NCBI Sequence Viewer
	XP_038955673	(Get FASTA)	NCBI Sequence Viewer
	XP_063136099	(Get FASTA)	NCBI Sequence Viewer
	XP_063136100	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95890	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000087648.1
	ENSRNOP00000088334.1

RefSeq Acc Id:

NP_001178652 ⟸ NM_001191723

- UniProtKB:

A0A8I6A7M0 (UniProtKB/TrEMBL), A0A8I6A7N8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPGWAGLLPEDGSGSPSAVMSDTDSDEDSAGGGPFSLTGFLFGNINGAGQLEGESVLDDECKK
HLAGLGALGLGSLITELTANEELSGTDGTLVNDEGWIRSREDAVDYSDINEVAEDESRRYQQTM
GSLQPLCHTDYDEDDYDADCEDIDCKLMPPPPPPPGPVKKERDQDGITGVSEDGEGIILPSIIA
PSSLASEKVDFSSSSDSESEMGPQEATQSESKDGKLTLPLAGIMQHDATKLLPSVTELFPEFRP
GKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEEECSVELEVNQKSLWNYDYAPP
PLPEQCLSDDEITMMAPVESKFSQSTGDTDKVMDTKPRVAEWRYGPARLWYDMLGVPEDGSGFD
YGFKMKKTEHDSTMKYNIMKKLRKLEENNGVDLLADENFLMVTQLHWEDDIIWDGEDVKHKGTK
PQRASLAGWLPSSMTRNAMAYNVQQGFTATLDDDKPWYSIFPIDNEDLVYGRWEDNIIWDAQNM
PRILEPPVLTLDPNDENLILEIPDEKEEATSNSPSKENKKESSLKKSRILLGKTGVIKEEPQQN
MSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPP
LKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEY
SEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNL
FRAPIYLHKMPESDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFI
YRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEE
IRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFI
AAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNA
KQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQ
RIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQR
MLLAAGSAAGGNNHRDDDTASVTSLNSSATGRCLKIYRTFRDEEGKEYVRCETVRKAAVIDAYV
RIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKMKERPD
LKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEELIKVEGTKI
VLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSS
ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLEL
IVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIV
TQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANS
VKYNGPESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYT
PQAKPPDLYDNSTSLSVSRDASVYQDESNLSVLDIPSATSEKQLTQEGGDGDGDLADEEEGTVQ
QPQASVLYEDLLMSEGEDDEEDAGSDEEGDNPFSAIQLSESGSDSDVESGSIRPKQPRMLQENT
RMGMENEESMMSYEGDGGEASRGLEDSNISYGSYEEPDPKSNTQDTSFSSIGGYEVSEEEEDEE
EQRSGPSVLSQVQLSEDEEDSEDLHSIAGDSDLDSDE

hide sequence

RefSeq Acc Id:	XP_038955673 ⟸ XM_039099745
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A7N8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955671 ⟸ XM_039099743
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A7N8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136099 ⟸ XM_063280029
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7N8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136100 ⟸ XM_063280030
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A7N8 (UniProtKB/TrEMBL)

Protein Domains

Bromo

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562050	AgrOrtholog
BioCyc Gene	G2FUF-2095	BioCyc
Ensembl Genes	ENSRNOG00000002565	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000060509	Ensembl
Ensembl Transcript	ENSRNOT00000003494.8	UniProtKB/TrEMBL
	ENSRNOT00000076799.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1100.10	UniProtKB/TrEMBL
	1.20.920.10	UniProtKB/TrEMBL
InterPro	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/TrEMBL
	TAF1	UniProtKB/TrEMBL
	TAF1_animal	UniProtKB/TrEMBL
	TAF1_HAT_dom	UniProtKB/TrEMBL
	TAF_II_230-bd	UniProtKB/TrEMBL
	TAFII-230_TBP-bd_sf	UniProtKB/TrEMBL
	Znf-CCHC_6	UniProtKB/TrEMBL
KEGG Report	rno:317256	UniProtKB/TrEMBL
NCBI Gene	317256	ENTREZGENE
PANTHER	PTHR13900	UniProtKB/TrEMBL
	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1	UniProtKB/TrEMBL
Pfam	Bromodomain	UniProtKB/TrEMBL
	DUF3591	UniProtKB/TrEMBL
	TBP-binding	UniProtKB/TrEMBL
	zf-CCHC_6	UniProtKB/TrEMBL
PhenoGen	Taf1	PhenoGen
PIRSF	TAF1_animal	UniProtKB/TrEMBL
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002565	RatGTEx
	ENSRNOG00000060509	RatGTEx
SMART	BROMO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47055	UniProtKB/TrEMBL
	SSF47370	UniProtKB/TrEMBL
UniProt	A0A8I6A7M0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7N8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Taf1	TATA-box binding protein associated factor 1	LOC102556339	transcription initiation factor TFIID subunit 1-like	Data merged from RGD:7527757	737654	PROVISIONAL
2016-05-18	Taf1	TATA-box binding protein associated factor 1	Taf1	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-17	LOC102556339	transcription initiation factor TFIID subunit 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Taf1	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Taf1_predicted	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Taf1_predicted	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)	RGD1562050_predicted	similar to CCG1 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1562050_predicted	similar to CCG1 (predicted)	LOC317256	similar to CCG1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317256	similar to CCG1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations