Rpl35 (ribosomal protein L35) - Rat Genome Database

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Gene: Rpl35 (ribosomal protein L35) Rattus norvegicus
Analyze
Symbol: Rpl35
Name: ribosomal protein L35
RGD ID: 1303007
Description: Enables ribonucleoprotein complex binding activity. Involved in cellular response to UV-B. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 19. Orthologous to human RPL35 (ribosomal protein L35); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L35; large ribosomal subunit protein uL29; MGC72958; similar to 60S RIBOSOMAL PROTEIN L35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rpl35-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,162,960 - 43,166,485 (-)NCBIGRCr8
mRatBN7.2322,753,255 - 22,756,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,753,253 - 22,756,243 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,221,740 - 26,224,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,806,724 - 34,809,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,619,424 - 32,622,385 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,294,813 - 23,297,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,516,639 - 28,519,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,787,991 - 18,790,952 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,684,363 - 18,687,324 (-)NCBI
Celera321,186,541 - 21,189,502 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein S3. Chan YL, etal., Arch Biochem Biophys 1990 Dec;283(2):546-50.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Binding of rat ribosomal proteins to yeast 5.8S ribosomal ribonucleic acid. Lee JC and Henry B, Nucleic Acids Res. 1982 Apr 10;10(7):2199-207.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. UVB and gamma-radiation induce the expression of mRNAs encoding the ribosomal subunit L13A in rat keratinocytes. Shahmolky N, etal., Photochem Photobiol. 1999 Sep;70(3):341-7.
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. The primary structure of rat ribosomal protein L35. Suzuki K, etal., Biochem Biophys Res Commun 1990 Mar 30;167(3):1377-82.
13. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12962325   PMID:15489334   PMID:19946888   PMID:22658674   PMID:24930395  


Genomics

Comparative Map Data
Rpl35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,162,960 - 43,166,485 (-)NCBIGRCr8
mRatBN7.2322,753,255 - 22,756,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,753,253 - 22,756,243 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,221,740 - 26,224,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,806,724 - 34,809,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,619,424 - 32,622,385 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,294,813 - 23,297,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,516,639 - 28,519,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,787,991 - 18,790,952 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,684,363 - 18,687,324 (-)NCBI
Celera321,186,541 - 21,189,502 (-)NCBICelera
Cytogenetic Map3q12NCBI
RPL35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,857,883 - 124,861,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,857,880 - 124,861,981 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,620,162 - 127,624,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,659,979 - 126,664,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,699,716 - 124,703,794NCBI
Celera998,268,108 - 98,272,188 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,232,652 - 97,236,731 (-)NCBIHuRef
CHM1_19127,768,933 - 127,773,012 (-)NCBICHM1_1
T2T-CHM13v2.09137,056,193 - 137,060,265 (-)NCBIT2T-CHM13v2.0
Rpl35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,891,593 - 38,895,143 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,891,592 - 38,895,636 (-)EnsemblGRCm39 Ensembl
GRCm38239,001,581 - 39,005,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,001,580 - 39,005,624 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,857,101 - 38,860,651 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,823,590 - 38,827,140 (-)NCBIMGSCv36mm8
Celera240,727,327 - 40,730,877 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Rpl35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,371,109 - 3,374,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,371,109 - 3,374,555 (+)NCBIChiLan1.0ChiLan1.0
RPL35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,496,403 - 14,500,576 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,498,747 - 14,502,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,978,395 - 95,982,568 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,496,145 - 124,500,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,496,145 - 124,500,271 (-)Ensemblpanpan1.1panPan2
RPL35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,153,433 - 58,158,597 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,153,260 - 58,162,327 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,352,267 - 57,357,435 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,073,884 - 59,079,057 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,073,977 - 59,079,245 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,832,868 - 57,838,032 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,148,479 - 58,153,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,239,419 - 58,244,781 (+)NCBIUU_Cfam_GSD_1.0
Rpl35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,287,716 - 193,292,432 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,053,507 - 13,061,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,056,243 - 13,060,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,636,637 - 265,645,593 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,637,266 - 265,642,278 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,462,244 - 299,467,299 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,276,525 - 13,290,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660792,812,050 - 2,817,012 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,333,320 - 10,337,130 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,333,275 - 10,337,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl35
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:84
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000019162
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 22 20 20 6 20 45 18 28 2
Medium 1 21 37 21 13 21 8 11 29 17 13 9 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_212511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X51705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000019162   ⟹   ENSRNOP00000019162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,753,253 - 22,756,228 (-)Ensembl
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106095   ⟹   ENSRNOP00000077178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,754,081 - 22,756,243 (-)Ensembl
RefSeq Acc Id: NM_212511   ⟹   NP_997676
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,162,960 - 43,165,921 (-)NCBI
mRatBN7.2322,753,255 - 22,756,217 (-)NCBI
Rnor_6.0323,294,813 - 23,297,774 (-)NCBI
Rnor_5.0328,516,639 - 28,519,600 (-)NCBI
RGSC_v3.4318,787,991 - 18,790,952 (-)RGD
Celera321,186,541 - 21,189,502 (-)RGD
Sequence:
RefSeq Acc Id: XM_063283528   ⟹   XP_063139598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,162,960 - 43,166,485 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_997676   ⟸   NM_212511
- UniProtKB: P17078 (UniProtKB/Swiss-Prot),   A6JEV9 (UniProtKB/TrEMBL),   A0A8L2UJE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019162   ⟸   ENSRNOT00000019162
RefSeq Acc Id: ENSRNOP00000077178   ⟸   ENSRNOT00000106095
RefSeq Acc Id: XP_063139598   ⟸   XM_063283528
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y7I3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17078-F1-model_v2 AlphaFold P17078 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692055
Promoter ID:EPDNEW_R2580
Type:multiple initiation site
Name:Rpl35_1
Description:ribosomal protein L35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0323,297,780 - 23,297,840EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303007 AgrOrtholog
BioCyc Gene G2FUF-49886 BioCyc
Ensembl Genes ENSRNOG00000014272 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055008574 UniProtKB/Swiss-Prot
  ENSRNOG00060027949 UniProtKB/Swiss-Prot
  ENSRNOG00065027531 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019162 ENTREZGENE
  ENSRNOT00000019162.7 UniProtKB/TrEMBL
  ENSRNOT00000106095.1 UniProtKB/TrEMBL
  ENSRNOT00055014475 UniProtKB/Swiss-Prot
  ENSRNOT00060048529 UniProtKB/Swiss-Prot
  ENSRNOT00065047470 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.310 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.3450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919623 IMAGE-MGC_LOAD
InterPro Ribosomal_L29/L35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L29/L35_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L29_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RL35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296709 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72958 IMAGE-MGC_LOAD
NCBI Gene 296709 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45722 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl35 PhenoGen
PROSITE RIBOSOMAL_L29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014272 RatGTEx
  ENSRNOG00055008574 RatGTEx
  ENSRNOG00060027949 RatGTEx
  ENSRNOG00065027531 RatGTEx
Superfamily-SCOP SSF46561 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y7I3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UJE8 ENTREZGENE, UniProtKB/TrEMBL
  A6JEV9 ENTREZGENE, UniProtKB/TrEMBL
  P17078 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-04-21 Rpl35  ribosomal protein L35  MGC72958  similar to 60S RIBOSOMAL PROTEIN L35  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-02-14 MGC72958  similar to 60S RIBOSOMAL PROTEIN L35      Symbol and Name status set to provisional 70820 PROVISIONAL