Zbtb1 (zinc finger and BTB domain containing 1) - Rat Genome Database

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Gene: Zbtb1 (zinc finger and BTB domain containing 1) Rattus norvegicus
Analyze
Symbol: Zbtb1
Name: zinc finger and BTB domain containing 1
RGD ID: 1303095
Description: Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; K63-linked polyubiquitin modification-dependent protein binding activity; and protein dimerization activity. Predicted to be involved in several processes, including nucleobase-containing compound biosynthetic process; positive regulation of lymphocyte differentiation; and regulation of gene expression. Predicted to act upstream of or within B cell differentiation and T cell differentiation in thymus. Predicted to be located in nuclear body. Predicted to be active in nucleoplasm. Orthologous to human ZBTB1 (zinc finger and BTB domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: zinc finger and BTB domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,832,506 - 100,864,019 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6100,838,714 - 100,852,643 (+)EnsemblGRCr8
mRatBN7.2695,096,838 - 95,125,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,096,387 - 95,118,996 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx695,502,842 - 95,506,108 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0695,801,356 - 95,804,622 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,230,169 - 95,233,435 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,401,775 - 99,425,739 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,402,360 - 99,424,019 (+)Ensemblrn6Rnor6.0
Rnor_5.06108,813,081 - 108,936,519 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4698,981,038 - 98,984,303 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera693,534,115 - 93,537,380 (+)NCBICelera
RGSC_v3.1698,984,493 - 98,987,759 (+)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA,ISO)
nuclear membrane  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:20797634   PMID:21706167   PMID:22201126   PMID:22753936   PMID:24657165  


Genomics

Comparative Map Data
Zbtb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,832,506 - 100,864,019 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6100,838,714 - 100,852,643 (+)EnsemblGRCr8
mRatBN7.2695,096,838 - 95,125,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,096,387 - 95,118,996 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx695,502,842 - 95,506,108 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0695,801,356 - 95,804,622 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,230,169 - 95,233,435 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,401,775 - 99,425,739 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,402,360 - 99,424,019 (+)Ensemblrn6Rnor6.0
Rnor_5.06108,813,081 - 108,936,519 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4698,981,038 - 98,984,303 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera693,534,115 - 93,537,380 (+)NCBICelera
RGSC_v3.1698,984,493 - 98,987,759 (+)NCBI
Cytogenetic Map6q24NCBI
ZBTB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381464,503,716 - 64,533,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1464,502,152 - 64,533,690 (+)Ensemblhg38GRCh38
GRCh371464,971,488 - 65,000,411 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361464,041,174 - 64,070,161 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341464,041,173 - 64,070,161NCBI
Celera1445,029,022 - 45,058,137 (+)NCBICelera
Cytogenetic Map14q23.3NCBI
HuRef1445,143,919 - 45,173,044 (+)NCBIHuRef
CHM1_11464,910,965 - 64,940,072 (+)NCBICHM1_1
T2T-CHM13v2.01458,711,422 - 58,741,460 (+)NCBIT2T-CHM13v2.0
Zbtb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391276,416,825 - 76,443,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1276,417,040 - 76,443,724 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381276,370,051 - 76,396,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1276,370,266 - 76,396,950 (+)Ensemblmm10GRCm38
MGSCv371277,471,253 - 77,489,734 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361277,289,106 - 77,307,290 (+)NCBIMGSCv36mm8
Celera1277,461,603 - 77,479,773 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1233.73NCBI
Zbtb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554665,355,344 - 5,376,240 (-)Ensembl
ChiLan1.0NW_0049554665,353,355 - 5,376,240 (-)NCBIChiLan1.0ChiLan1.0
ZBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21565,615,544 - 65,645,388 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11464,832,059 - 64,864,228 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01445,085,146 - 45,114,965 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11463,337,806 - 63,366,653 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1463,354,458 - 63,359,403 (+)EnsemblpanPan2panpan1.1
ZBTB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1838,933,721 - 38,959,306 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl838,933,805 - 38,959,306 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha838,625,165 - 38,650,702 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0839,155,081 - 39,180,556 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl839,154,947 - 39,180,556 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1838,776,929 - 38,802,424 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0838,848,165 - 38,873,674 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0839,208,582 - 39,234,081 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864065,954,381 - 65,979,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364958,213,087 - 8,231,216 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364958,212,136 - 8,238,876 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl788,576,008 - 88,602,724 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1788,575,563 - 88,602,726 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2794,956,867 - 94,981,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12441,712,721 - 41,738,853 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2441,712,114 - 41,740,654 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605329,889,458 - 29,915,735 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473436,479,670 - 36,509,655 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1790,545,401 - 90,556,837 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb1
205 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:369
Count of miRNA genes:179
Interacting mature miRNAs:205
Transcripts:ENSRNOT00000050865
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6100704576101593851Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat

Markers in Region
RH139658  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2695,158,763 - 95,158,949 (+)MAPPERmRatBN7.2
Rnor_6.0699,463,805 - 99,463,990NCBIRnor6.0
Rnor_5.06108,873,728 - 108,873,913UniSTSRnor5.0
RGSC_v3.4699,028,190 - 99,028,375UniSTSRGSC3.4
Celera693,581,696 - 93,581,881UniSTS
RH 3.4 Map6675.5UniSTS
Cytogenetic Map6q24UniSTS
AU047738  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86100,911,578 - 100,911,742 (+)Marker Load Pipeline
mRatBN7.2695,175,918 - 95,176,082 (+)MAPPERmRatBN7.2
Rnor_6.0699,539,309 - 99,539,472NCBIRnor6.0
Rnor_6.0699,480,956 - 99,481,119NCBIRnor6.0
Rnor_5.06108,945,338 - 108,945,501UniSTSRnor5.0
Rnor_5.06108,890,878 - 108,891,041UniSTSRnor5.0
RGSC_v3.4699,045,341 - 99,045,504UniSTSRGSC3.4
Celera693,598,856 - 93,599,019UniSTS
Cytogenetic Map6q24UniSTS
Zbtb1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2695,112,219 - 95,112,275 (+)MAPPERmRatBN7.2
Rnor_6.0699,526,943 - 99,526,998NCBIRnor6.0
Rnor_6.0699,417,229 - 99,417,284NCBIRnor6.0
Rnor_5.06108,936,051 - 108,936,106UniSTSRnor5.0
RGSC_v3.4698,983,835 - 98,983,890UniSTSRGSC3.4
Celera693,536,912 - 93,536,967UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078498   ⟹   ENSRNOP00000072596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl695,096,387 - 95,118,996 (+)Ensembl
Rnor_6.0 Ensembl699,402,360 - 99,424,019 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110356   ⟹   ENSRNOP00000097406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,845,082 - 100,848,546 (+)Ensembl
mRatBN7.2 Ensembl695,097,399 - 95,113,410 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117277   ⟹   ENSRNOP00000080670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,838,714 - 100,848,239 (+)Ensembl
mRatBN7.2 Ensembl695,097,591 - 95,111,965 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119538   ⟹   ENSRNOP00000081356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,845,082 - 100,848,336 (+)Ensembl
mRatBN7.2 Ensembl695,096,835 - 95,112,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000124783   ⟹   ENSRNOP00000104817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,845,082 - 100,852,643 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144490   ⟹   ENSRNOP00000106278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,845,082 - 100,852,643 (+)Ensembl
RefSeq Acc Id: NM_001004444   ⟹   NP_001004444
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,845,090 - 100,848,355 (+)NCBI
mRatBN7.2695,109,423 - 95,112,688 (+)NCBI
Rnor_6.0699,414,432 - 99,417,697 (+)NCBI
Rnor_5.06108,813,081 - 108,936,519 (+)NCBI
RGSC_v3.4698,981,038 - 98,984,303 (+)RGD
Celera693,534,115 - 93,537,380 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240241   ⟹   XP_006240303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,832,506 - 100,848,362 (+)NCBI
mRatBN7.2695,096,838 - 95,114,753 (+)NCBI
Rnor_6.0699,401,775 - 99,420,655 (+)NCBI
Rnor_5.06108,813,081 - 108,936,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240243   ⟹   XP_006240305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,833,007 - 100,848,362 (+)NCBI
mRatBN7.2695,097,339 - 95,114,753 (+)NCBI
Rnor_6.0699,402,276 - 99,420,655 (+)NCBI
Rnor_5.06108,813,081 - 108,936,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112272   ⟹   XP_038968200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,838,330 - 100,848,362 (+)NCBI
mRatBN7.2695,097,784 - 95,114,753 (+)NCBI
RefSeq Acc Id: XM_039112273   ⟹   XP_038968201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,838,330 - 100,864,019 (+)NCBI
mRatBN7.2695,097,783 - 95,125,811 (+)NCBI
RefSeq Acc Id: XM_039112274   ⟹   XP_038968202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,838,330 - 100,856,733 (+)NCBI
mRatBN7.2695,097,784 - 95,121,065 (+)NCBI
RefSeq Acc Id: XM_063261928   ⟹   XP_063117998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,832,506 - 100,856,733 (+)NCBI
RefSeq Acc Id: NP_001004444   ⟸   NM_001004444
- UniProtKB: Q672J3 (UniProtKB/TrEMBL),   E9PT64 (UniProtKB/TrEMBL),   A0A8I5ZRA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240303   ⟸   XM_006240241
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006240305   ⟸   XM_006240243
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000072596   ⟸   ENSRNOT00000078498
RefSeq Acc Id: XP_038968201   ⟸   XM_039112273
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968202   ⟸   XM_039112274
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968200   ⟸   XM_039112272
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000097406   ⟸   ENSRNOT00000110356
Ensembl Acc Id: ENSRNOP00000081356   ⟸   ENSRNOT00000119538
Ensembl Acc Id: ENSRNOP00000080670   ⟸   ENSRNOT00000117277
RefSeq Acc Id: XP_063117998   ⟸   XM_063261928
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000104817   ⟸   ENSRNOT00000124783
Ensembl Acc Id: ENSRNOP00000106278   ⟸   ENSRNOT00000144490
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3D7-F1-model_v2 AlphaFold A0A0G2K3D7 1-644 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694683
Promoter ID:EPDNEW_R5200
Type:single initiation site
Name:Zbtb1_1
Description:zinc finger and BTB domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0699,402,379 - 99,402,439EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303095 AgrOrtholog
BioCyc Gene G2FUF-37063 BioCyc
Ensembl Genes ENSRNOG00000058593 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000110356.2 UniProtKB/TrEMBL
  ENSRNOT00000117277 ENTREZGENE
  ENSRNOT00000117277.2 UniProtKB/TrEMBL
  ENSRNOT00000119538 ENTREZGENE
  ENSRNOT00000119538.2 UniProtKB/TrEMBL
  ENSRNOT00000124783.1 UniProtKB/TrEMBL
  ENSRNOT00000144490.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:314246 UniProtKB/TrEMBL
NCBI Gene 314246 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN CONTAINING 1 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
PhenoGen Zbtb1 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058593 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K3D7 ENTREZGENE
  A0A8I5ZRA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5U4_RAT UniProtKB/TrEMBL
  E9PT64 ENTREZGENE
  Q672J3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9PT64 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zbtb1  zinc finger and BTB domain containing 1      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Zbtb1  zinc finger and BTB domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL