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ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to light stimulus
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Accession:GO:0071482 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


show annotations for term's descendants           Sort by:
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17234588)
GO_REF:0000107		 RGD
Ensembl		 PMID:17234588 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Gpr52 G protein-coupled receptor 52 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:72,800,265...72,804,989
Ensembl chr13:72,800,127...72,806,180 		JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:206,876,373...206,885,034
Ensembl chr 2:204,191,427...204,199,733 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEP RGD PMID:17475674 RGD:9068879 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 IEP RGD PMID:24202060 RGD:12910722 NCBI chr11:45,066,875...45,080,024
Ensembl chr11:31,580,742...31,593,901 		JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:157,056,355...157,076,716
Ensembl chr  X:151,905,096...151,925,388 		JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Opn3 opsin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847 		JBrowse link
G Opn4 opsin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Opn5 opsin 5 involved_in IBA
ISO		 GO_REF:0000033
(PMID:31607531)		 GO_Central
RGD		 PMID:31607531 GO_REF:0000033 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223 		JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21052544)		 GO_Central
Ensembl
RGD		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO
IEA		 MGI:2386674 (PMID:10725384)
GO_REF:0000107		 RGD
Ensembl		 PMID:10725384 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19896109)
GO_REF:0000107
(PMID:19861548)
MGI:4421441 (PMID:19966281), (PMID:21052544)		 RGD
Ensembl		 PMID:19861548 PMID:19896109 PMID:19966281 PMID:21052544 GO_REF:0000107 NCBI chr 1:127,130,686...127,247,219
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:2158456 (PMID:17202487)
GO_REF:0000107		 RGD
Ensembl		 PMID:17202487 GO_REF:0000107 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:82,883,547...82,933,817 		JBrowse link
G Slc24a2 solute carrier family 24 member 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:106,543,867...106,787,810
Ensembl chr 5:101,502,278...101,739,337 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 involved_in ISO
IEA		 (PMID:28650316)
GO_REF:0000107		 RGD
Ensembl		 PMID:28650316 GO_REF:0000107 NCBI chr 6:127,044,470...127,184,684
Ensembl chr 6:121,280,031...121,414,949 		JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in ISO
ISS		 (PMID:19424603)
GO_REF:0000024		 RGD
UniProt		 PMID:19424603 GO_REF:0000024 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO
IEA		 (PMID:9925639)
GO_REF:0000107		 RGD
Ensembl		 PMID:9925639 GO_REF:0000107 NCBI chr 8:105,306,299...105,403,742
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Aurkb aurora kinase B involved_in ISO
IEA
ISS		 (PMID:20959462)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20959462 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,243,116...54,249,675
Ensembl chr10:53,745,142...53,750,837 		JBrowse link
G Bak1 BCL2-antagonist/killer 1 involved_in ISO
IEA		 (PMID:15901672)
GO_REF:0000107		 RGD
Ensembl		 PMID:15901672 GO_REF:0000107 NCBI chr20:5,102,334...5,111,615
Ensembl chr20:5,100,480...5,109,264 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:98834 (PMID:14963330)
GO_REF:0000107		 RGD
Ensembl		 PMID:14963330 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO (PMID:23629966) RGD PMID:23629966 NCBI chr 3:125,953,466...125,974,087
Ensembl chr 3:105,499,538...105,520,145 		JBrowse link
G Casp9 caspase 9 involved_in ISO
IEA		 (PMID:15657060)
GO_REF:0000107		 RGD
Ensembl		 PMID:15657060 GO_REF:0000107 Ensembl chr 5:154,109,046...154,126,626 JBrowse link
G Casp9_v1 caspase-9-carboxyl-terminal divergent involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Cops9 COP9 signalosome subunit 9 involved_in ISO (PMID:26456823) RGD PMID:26456823 NCBI chr 9:100,657,276...100,662,206
Ensembl chr 9:93,209,843...93,213,317 		JBrowse link
G Crebbp CREB binding protein involved_in ISO
ISS		 (PMID:24939902)
GO_REF:0000024		 RGD
UniProt		 PMID:24939902 GO_REF:0000024 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr16:83,086,688...83,124,503
Ensembl chr16:76,384,546...76,422,330 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 1:216,677,810...216,703,605
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 3:97,640,923...97,667,617
Ensembl chr 3:77,185,109...77,207,631 		JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within ISO (PMID:17515607) RGD PMID:17515607 NCBI chr 1:156,318,559...156,342,869
Ensembl chr 1:146,906,154...146,930,462 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
IEA
ISS		 (PMID:27940037)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27940037 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (PMID:12176355) RGD PMID:12176355 NCBI chr 3:125,810,207...125,895,574
Ensembl chr 3:105,356,261...105,441,630 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12176355)		 UniProt
Ensembl
RGD		 PMID:12176355 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:103,405,880...103,430,549
Ensembl chr 6:97,672,766...97,706,225 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:24939902) RGD PMID:24939902 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO UniProtKB:Q15554 (PMID:17055345), (PMID:32034146) RGD PMID:17055345 PMID:32034146 NCBI chr10:2,926,085...2,958,176
Ensembl chr10:2,419,038...2,448,369
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 2:172,447,738...172,609,591
Ensembl chr 2:170,149,694...170,309,941 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO
IEA		 (PMID:18026119)
GO_REF:0000107		 RGD
Ensembl		 PMID:18026119 GO_REF:0000107 NCBI chr 3:126,822,280...126,919,532
Ensembl chr 3:106,368,455...106,467,911 		JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO
IEA		 (PMID:24217620)
GO_REF:0000107		 RGD
Ensembl		 PMID:24217620 GO_REF:0000107 NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Mapk13 mitogen activated protein kinase 13 involved_in ISO
IEA		 (PMID:9218798)
GO_REF:0000107		 RGD
Ensembl		 PMID:9218798 GO_REF:0000107 NCBI chr20:6,836,979...6,847,197
Ensembl chr20:6,835,320...6,844,222 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IMP RGD PMID:8875991 RGD:2304246 NCBI chr10:34,670,750...34,711,972
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO
IEA		 (PMID:28297716)
GO_REF:0000107		 RGD
Ensembl		 PMID:28297716 GO_REF:0000107 NCBI chr15:27,476,659...27,491,134
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G N4bp1 Nedd4 binding protein 1 involved_in ISO
IEA		 (PMID:17592138)
GO_REF:0000107		 RGD
Ensembl		 PMID:17592138 GO_REF:0000107 NCBI chr19:36,396,082...36,446,835
Ensembl chr19:20,222,776...20,273,570 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO
IEA		 (PMID:17996703)
GO_REF:0000107		 RGD
Ensembl		 PMID:17996703 GO_REF:0000107 NCBI chr 8:82,264,751...82,349,642
Ensembl chr 8:73,383,695...73,468,951 		JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 acts_upstream_of_or_within ISO MGI:97583 (PMID:17242187) RGD PMID:17242187 NCBI chr15:33,256,912...33,284,522
Ensembl chr15:29,305,535...29,314,610 		JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO
IEA		 (PMID:20959462)
GO_REF:0000107		 RGD
Ensembl		 PMID:20959462 GO_REF:0000107 NCBI chr 5:172,102,369...172,114,168
Ensembl chr 5:166,820,161...166,831,949 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:18,245,739...18,255,913
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
IEA		 (PMID:24289924)
GO_REF:0000107		 RGD
Ensembl		 PMID:24289924 GO_REF:0000107 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO MGI:5293435 (PMID:21715333) RGD PMID:21715333 NCBI chr15:44,198,506...44,209,572
Ensembl chr15:40,023,002...40,034,014 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IEP
IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:24939902)		 Ensembl
UniProt
RGD		 PMID:24939902 PMID:8905661 GO_REF:0000024 GO_REF:0000107, RGD:10448977 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within ISO MGI:103296|MGI:2149414 (PMID:17242187) RGD PMID:17242187 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24939902)		 UniProt
Ensembl
RGD		 PMID:24939902 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,161,984...104,178,074
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Polk DNA polymerase kappa involved_in ISO
IEA		 (PMID:28297716)
GO_REF:0000107		 RGD
Ensembl		 PMID:28297716 GO_REF:0000107 NCBI chr 2:29,556,831...29,616,960
Ensembl chr 2:27,822,679...27,882,313 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IEP RGD PMID:9811446 RGD:9999409 NCBI chr 1:105,136,521...105,139,596
Ensembl chr 1:96,000,058...96,003,171 		JBrowse link
G Prkcd protein kinase C, delta involved_in ISO
IEA
ISS		 (PMID:17303575)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17303575 GO_REF:0000024 GO_REF:0000107 NCBI chr16:5,775,681...5,806,122
Ensembl chr16:5,769,215...5,799,352 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:17925408 RGD:10044023 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K involved_in ISO (PMID:16849327) RGD PMID:16849327 NCBI chr 1:18,557,091...19,056,297
Ensembl chr 1:16,850,576...17,103,605 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19358743)		 UniProt
Ensembl
RGD		 PMID:19358743 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:91,076,786...91,196,719
Ensembl chr 9:83,630,063...83,748,689 		JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISO (PMID:21659603) RGD PMID:21659603 NCBI chr 4:163,320,141...163,325,527
Ensembl chr 4:161,634,048...161,639,371 		JBrowse link
G Rnf168 ring finger protein 168 acts_upstream_of_or_within ISO (PMID:24217620) RGD PMID:24217620 NCBI chr11:81,991,352...82,013,306
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:54,109,692...54,112,822
Ensembl chr10:53,610,421...53,613,966 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO
IEA		 (PMID:18026119)
GO_REF:0000107		 RGD
Ensembl		 PMID:18026119 GO_REF:0000107 NCBI chr 1:105,038,487...105,051,851
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA
ISO		 GO_REF:0000107
(PMID:27906959)		 Ensembl
RGD		 PMID:27906959 GO_REF:0000107 NCBI chr13:95,110,598...95,126,929
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in ISO
IEA		 (PMID:17303575)
GO_REF:0000107		 RGD
Ensembl		 PMID:17303575 GO_REF:0000107 NCBI chr 1:169,304,772...169,308,615
Ensembl chr 1:159,892,859...159,896,794 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr  X:70,680,901...70,756,535
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:19,272,433...19,282,173
Ensembl chr16:19,238,487...19,248,087 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16213212), (PMID:23629966)
GO_REF:0000107
(PMID:23629966)
MGI:99702 (PMID:14963330)		 RGD
Ensembl		 PMID:14963330 PMID:16213212 PMID:23629966 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:11557757)
GO_REF:0000107		 RGD
Ensembl		 PMID:11557757 GO_REF:0000107 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:24,260,568...24,267,968 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA		 (PMID:20511593)
GO_REF:0000107		 RGD
Ensembl		 PMID:20511593 GO_REF:0000107 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in ISO
IEA		 (PMID:15735003)
GO_REF:0000107		 RGD
Ensembl		 PMID:15735003 GO_REF:0000107 NCBI chr12:46,928,273...46,930,766
Ensembl chr12:41,267,549...41,270,042 		JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 8:58,222,258...58,282,711
Ensembl chr 8:49,325,867...49,386,229 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO
IEA		 (PMID:18026119)
GO_REF:0000107		 RGD
Ensembl		 PMID:18026119 GO_REF:0000107 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO
IEA		 (PMID:24657165)
GO_REF:0000107		 RGD
Ensembl		 PMID:24657165 GO_REF:0000107 NCBI chr 6:100,832,506...100,864,019
Ensembl chr 6:95,096,387...95,118,996 		JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 involved_in ISO (PMID:19800881) RGD PMID:19800881 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,104,466...19,112,519 		JBrowse link
G Gdf1 growth differentiation factor 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,097,314...19,112,519 		JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20876573)		 UniProt
Ensembl
RGD		 PMID:20876573 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:149,806,826...149,957,381
Ensembl chr 2:147,722,086...147,803,792 		JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in ISO (PMID:31380578) RGD PMID:31380578 NCBI chr 8:12,943,453...12,963,966
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:31380578)		 Ensembl
UniProt
RGD		 PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in ISO
IEA
ISS		 (PMID:31380578)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:12,925,267...12,938,828
Ensembl chr 8:4,640,416...4,653,961 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO
IEA		 (PMID:31380578)
GO_REF:0000107		 RGD
Ensembl		 PMID:31380578 GO_REF:0000107 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:31380578)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Opn3 opsin 3 involved_in ISO
IEA		 (PMID:31380578)
GO_REF:0000107		 RGD
Ensembl		 PMID:31380578 GO_REF:0000107 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847 		JBrowse link
G Opn5 opsin 5 involved_in ISO
IEA		 (PMID:31380578)
GO_REF:0000107		 RGD
Ensembl		 PMID:31380578 GO_REF:0000107 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISS
ISO		 GO_REF:0000024
(PMID:23220213)		 UniProt
RGD		 PMID:23220213 GO_REF:0000024 NCBI chr 2:167,025,985...167,037,998
Ensembl chr 2:164,727,779...164,740,221 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31380578)		 UniProt
Ensembl
RGD		 PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:3,766,509...3,772,578
Ensembl chr  X:1,212,972...1,217,664 		JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A involved_in ISO (PMID:25329316) RGD PMID:25329316 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Crip1 cysteine rich protein 1 involved_in ISO
ISS		 (PMID:20415737) RGD PMID:20415737 PMID:20415737 RGD:8553326 NCBI chr 6:138,047,801...138,055,672
Ensembl chr 6:132,226,746...132,234,620 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21699545)		 UniProt
Ensembl
RGD		 PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:117,129,311...117,133,162
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
ISS
IEA		 (PMID:21699545)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:117,121,802...117,125,494
Ensembl chr 8:108,243,133...108,246,850 		JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:21699545) RGD PMID:21699545 NCBI chr 8:117,133,028...117,138,663
Ensembl chr 8:108,250,667...108,260,647 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:35857590)
(PMID:32289254)		 UniProt
Ensembl
RGD		 PMID:32289254 PMID:35857590 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:77,538,146...77,697,540
Ensembl chr 3:57,130,551...57,289,626 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO
IEA		 (PMID:35857590)
GO_REF:0000107		 RGD
Ensembl		 PMID:35857590 GO_REF:0000107 NCBI chr 7:122,098,120...122,105,023
Ensembl chr 7:120,218,478...120,225,395 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO		 GO_REF:0000107
(PMID:35857590)		 Ensembl
RGD		 PMID:35857590 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO
IEA		 (PMID:22355679)
GO_REF:0000107		 RGD
Ensembl		 PMID:22355679 GO_REF:0000107 NCBI chr10:46,666,552...46,669,613
Ensembl chr10:46,167,217...46,170,155 		JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISO
ISS
IEA		 (PMID:20876573)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:20876573 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:149,806,826...149,957,381
Ensembl chr 2:147,722,086...147,803,792 		JBrowse link
G Nlrp1a NLR family, pyrin domain containing 1A involved_in ISO (PMID:30096351) RGD PMID:30096351 NCBI chr10:56,277,134...56,332,229
Ensembl chr10:55,778,560...55,825,180 		JBrowse link
G Rpl13a ribosomal protein L13A IEP RGD PMID:10483362 RGD:11036101 NCBI chr 1:104,746,223...104,748,975
Ensembl chr 1:95,609,370...95,620,463 		JBrowse link
G Rpl35 ribosomal protein L35 IEP RGD PMID:10483362 RGD:11036101 NCBI chr 3:43,162,960...43,166,485
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:25329316) RGD PMID:25329316 NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within ISO
IEA		 MGI:98834 (PMID:24014029)
GO_REF:0000107		 RGD
Ensembl		 PMID:24014029 GO_REF:0000107 NCBI chr 8:44,683,138...44,699,502
Ensembl chr 8:36,494,289...36,510,571 		JBrowse link
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:14558917 RGD:2317408 NCBI chr 7:55,176,558...55,201,757
Ensembl chr 7:53,290,664...53,314,915 		JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within ISO (PMID:21159655) RGD PMID:21159655 NCBI chr 3:32,195,024...32,201,111
Ensembl chr 3:11,797,031...11,801,568 		JBrowse link
G Polh DNA polymerase eta acts_upstream_of_or_within ISO
IEA		 MGI:1347081|MGI:3614412 (PMID:17114294)
GO_REF:0000107		 RGD
Ensembl		 PMID:17114294 GO_REF:0000107 NCBI chr 9:22,275,929...22,310,576
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Poli DNA polymerase iota acts_upstream_of_or_within ISO MGI:1891457|MGI:3055735 (PMID:17114294) RGD PMID:17114294 NCBI chr18:66,389,214...66,409,734
Ensembl chr18:64,116,774...64,163,418 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA		 MGI:108090 (PMID:24014029)
GO_REF:0000107		 RGD
Ensembl		 PMID:24014029 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnb5 G protein subunit beta 5 acts_upstream_of_or_within ISO
IEA		 (PMID:23555598)
GO_REF:0000107		 RGD
Ensembl		 PMID:23555598 GO_REF:0000107 NCBI chr 8:84,956,629...84,985,576
Ensembl chr 8:76,073,306...76,105,069 		JBrowse link
G Rgs9 regulator of G-protein signaling 9 acts_upstream_of_or_within ISO
IEA		 (PMID:23555598)
GO_REF:0000107		 RGD
Ensembl		 PMID:23555598 GO_REF:0000107 NCBI chr10:94,696,556...94,770,387
Ensembl chr10:94,197,054...94,270,892 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS		 (PMID:1730053)
GO_REF:0000024		 RGD
UniProt		 PMID:1730053 GO_REF:0000024 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:163,830,217...163,870,015
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA		 MGI:3052754 (PMID:23993650)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993650 GO_REF:0000107 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:82,821,184...82,837,971
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (PMID:18768681) RGD PMID:18768681 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899 		JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO
IEA		 (PMID:22043319)
GO_REF:0000107		 RGD
Ensembl		 PMID:22043319 GO_REF:0000107 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) RGD PMID:12080348 NCBI chr10:18,245,739...18,255,913
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO
IEA		 MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178)
GO_REF:0000107		 RGD
Ensembl		 PMID:15365173 PMID:15365178 GO_REF:0000107 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
GO_REF:0000107
(PMID:15946941)		 UniProt
InterPro
Ensembl
RGD		 PMID:15946941 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,821,184...82,837,971
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:54,109,692...54,112,822
Ensembl chr10:53,610,421...53,613,966 		JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 involved_in ISO
IEA		 (PMID:20855601)
GO_REF:0000107		 RGD
Ensembl		 PMID:20855601 GO_REF:0000107 NCBI chr 3:147,282,461...147,295,870
Ensembl chr 3:147,282,624...147,296,110 		JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:122,154,332...122,192,299
Ensembl chr  X:117,287,484...117,326,688 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:14751237), (PMID:22334663) RGD PMID:14751237 PMID:22334663 NCBI chr 1:216,677,810...216,703,605
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO
IEA		 (PMID:14751237), (PMID:22334663)
GO_REF:0000107		 RGD
Ensembl		 PMID:14751237 PMID:22334663 GO_REF:0000107 NCBI chr 3:97,640,923...97,667,617
Ensembl chr 3:77,185,109...77,207,631 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:88,099,308...88,135,966
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G H2ac25 H2A clustered histone 25 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr10:44,233,283...44,234,835
Ensembl chr10:43,733,668...43,744,874 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO
IEA		 (PMID:20855601)
GO_REF:0000107		 RGD
Ensembl		 PMID:20855601 GO_REF:0000107 NCBI chr 3:126,822,280...126,919,532
Ensembl chr 3:106,368,455...106,467,911 		JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO
IEA		 (PMID:18292087)
GO_REF:0000107		 RGD
Ensembl		 PMID:18292087 GO_REF:0000107 NCBI chr19:68,360,950...68,363,877
Ensembl chr19:51,453,239...51,454,192 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) RGD PMID:22431748 NCBI chr19:40,219,235...40,225,543
Ensembl chr19:23,314,797...23,320,695 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) RGD PMID:22431748 NCBI chr 5:74,885,518...74,923,621
Ensembl chr 5:70,090,232...70,128,319 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (PMID:20670893)
GO_REF:0000107		 RGD
Ensembl		 PMID:20670893 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:65,227,281...65,275,784
Ensembl chr 5:60,431,673...60,475,726 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in ISO
IEA		 (PMID:8077226)
GO_REF:0000107
(PMID:22431748)		 RGD
Ensembl		 PMID:8077226 PMID:22431748 GO_REF:0000107 NCBI chr 4:125,550,833...125,578,084
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    response to stimulus 11081
      response to abiotic stimulus 1619
        response to radiation 540
          response to light stimulus 381
            cellular response to light stimulus 125
              G protein-coupled opsin signaling pathway + 5
              cellular response to UV + 102
              cellular response to blue light + 0
              cellular response to light intensity + 6
              cellular response to red or far red light + 1
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      cellular response to stimulus 8975
        cellular response to environmental stimulus 458
          cellular response to abiotic stimulus 458
            cellular response to radiation 201
              cellular response to light stimulus 125
                G protein-coupled opsin signaling pathway + 5
                cellular response to UV + 102
                cellular response to blue light + 0
                cellular response to light intensity + 6
                cellular response to red or far red light + 1
paths to the root