Per3 (period circadian regulator 3) - Rat Genome Database

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Gene: Per3 (period circadian regulator 3) Rattus norvegicus
Analyze
Symbol: Per3
Name: period circadian regulator 3
RGD ID: 621581
Description: Predicted to enable enzyme binding activity; transcription cis-regulatory region binding activity; and transcription corepressor binding activity. Predicted to be involved in several processes, including entrainment of circadian clock by photoperiod; protein stabilization; and regulation of gene expression. Predicted to act upstream of or within circadian rhythm. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome and advanced sleep phase syndrome 3. Orthologous to human PER3 (period circadian regulator 3); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: circadian clock protein PERIOD 3; period circadian clock 3; period circadian protein homolog 3; period homolog 3; period homolog 3 (Drosophila); period3; rper3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25161,460,228 - 161,495,404 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5161,459,533 - 161,495,607 (-)Ensembl
Rnor_6.05168,088,126 - 168,123,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,086,998 - 168,123,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,665,221 - 171,700,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,152,693 - 168,187,442 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15168,163,026 - 168,197,630 (-)NCBI
Celera5159,712,426 - 159,747,156 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
calcium silicate  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
cerium trichloride  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dichloromethane  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
Erionite  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
imidacloprid  (EXP)
isoprenaline  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
metacetamol  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
ochratoxin A  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenethyl caffeate  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
ritodrine  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (EXP)
Se-methylselenocysteine  (EXP)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
styrene  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP)
tremolite asbestos  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

Additional References at PubMed
PMID:9989497   PMID:12843397   PMID:14564007   PMID:15917222   PMID:16267386   PMID:17346965   PMID:19716732   PMID:20738730   PMID:21957163   PMID:24439663   PMID:24577121   PMID:26903630  


Genomics

Comparative Map Data
Per3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25161,460,228 - 161,495,404 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5161,459,533 - 161,495,607 (-)Ensembl
Rnor_6.05168,088,126 - 168,123,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,086,998 - 168,123,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,665,221 - 171,700,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,152,693 - 168,187,442 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15168,163,026 - 168,197,630 (-)NCBI
Celera5159,712,426 - 159,747,156 (-)NCBICelera
Cytogenetic Map5q36NCBI
PER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817,784,291 - 7,845,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl17,784,291 - 7,845,177 (+)EnsemblGRCh38hg38GRCh38
GRCh3717,844,351 - 7,905,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3617,767,350 - 7,827,824 (+)NCBINCBI36hg18NCBI36
Build 3417,779,028 - 7,839,503NCBI
Celera16,952,489 - 7,012,918 (+)NCBI
Cytogenetic Map1p36.23NCBI
HuRef16,993,003 - 7,053,532 (+)NCBIHuRef
CHM1_117,832,500 - 7,892,974 (+)NCBICHM1_1
T2T-CHM13v2.017,315,337 - 7,376,224 (+)NCBI
Per3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,081,475 - 151,129,167 (-)NCBIGRCm39mm39
GRCm39 Ensembl4151,088,109 - 151,129,122 (-)Ensembl
GRCm384150,997,018 - 151,044,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4151,003,652 - 151,044,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv374150,377,764 - 150,418,731 (-)NCBIGRCm37mm9NCBIm37
MGSCv364149,848,512 - 149,888,389 (-)NCBImm8
Celera4153,279,480 - 153,320,397 (-)NCBICelera
Cytogenetic Map4E2NCBI
Per3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,059,773 - 5,101,637 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554865,058,602 - 5,101,480 (-)NCBIChiLan1.0ChiLan1.0
PER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.117,795,549 - 7,855,922 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17,795,552 - 7,855,922 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v016,547,667 - 6,607,905 (+)NCBIMhudiblu_PPA_v0panPan3
PER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,445,580 - 61,499,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,445,461 - 61,498,499 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,454,281 - 61,508,079 (+)NCBI
ROS_Cfam_1.0561,662,394 - 61,716,172 (+)NCBI
ROS_Cfam_1.0 Ensembl561,662,356 - 61,716,152 (+)Ensembl
UMICH_Zoey_3.1561,661,665 - 61,715,387 (+)NCBI
UNSW_CanFamBas_1.0561,526,094 - 61,579,868 (+)NCBI
UU_Cfam_GSD_1.0561,929,781 - 61,983,527 (+)NCBI
Per3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,805,406 - 31,853,491 (+)NCBI
SpeTri2.0NW_0049366232,291,211 - 2,362,693 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1668,487,634 - 68,548,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PER3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,912,773 - 123,970,440 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,912,208 - 123,970,549 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605427,947,725 - 28,005,720 (-)NCBIVero_WHO_p1.0
Per3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248183,967,333 - 4,007,739 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248183,959,639 - 4,007,739 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D5Mco10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,481,433 - 161,481,680 (+)MAPPERmRatBN7.2
Rnor_6.05168,109,415 - 168,109,659NCBIRnor6.0
Rnor_5.05171,686,510 - 171,686,754UniSTSRnor5.0
RGSC_v3.45168,173,895 - 168,174,140RGDRGSC3.4
RGSC_v3.45168,173,896 - 168,174,140UniSTSRGSC3.4
RGSC_v3.15168,184,083 - 168,184,328RGD
Celera5159,733,610 - 159,733,854UniSTS
Cytogenetic Map5q36UniSTS
BF419445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,476,220 - 161,476,346 (+)MAPPERmRatBN7.2
Rnor_6.05168,104,117 - 168,104,242NCBIRnor6.0
Rnor_5.05171,681,212 - 171,681,337UniSTSRnor5.0
RGSC_v3.45168,168,684 - 168,168,809UniSTSRGSC3.4
Celera5159,728,417 - 159,728,542UniSTS
RH 3.4 Map51128.4UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:128
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000024932
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 12 13 4 12 4 4 7 27 21 32 11 4
Low 31 44 37 7 37 4 4 47 14 9 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_023978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB092512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB092513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB092977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF311875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024932   ⟹   ENSRNOP00000024932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,460,228 - 161,495,607 (-)Ensembl
Rnor_6.0 Ensembl5168,086,998 - 168,123,395 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092747   ⟹   ENSRNOP00000076026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,460,374 - 161,495,607 (-)Ensembl
Rnor_6.0 Ensembl5168,088,272 - 168,123,030 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092840
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,119,561 - 168,123,030 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,109,659 - 168,110,285 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,121,316 - 168,123,021 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093063   ⟹   ENSRNOP00000075932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,112,376 - 168,120,179 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,121,998 - 168,122,977 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5168,121,329 - 168,121,640 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108999   ⟹   ENSRNOP00000094435
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,459,533 - 161,495,295 (-)Ensembl
RefSeq Acc Id: NM_023978   ⟹   NP_076468
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,228 - 161,494,982 (-)NCBI
Rnor_6.05168,088,126 - 168,123,030 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
RGSC_v3.45168,152,693 - 168,187,442 (-)RGD
Celera5159,712,426 - 159,747,156 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239500   ⟹   XP_006239562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,403 (-)NCBI
Rnor_6.05168,089,355 - 168,123,482 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239501   ⟹   XP_006239563
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,402 (-)NCBI
Rnor_6.05168,089,355 - 168,123,482 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239502   ⟹   XP_006239564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,404 (-)NCBI
Rnor_6.05168,089,355 - 168,123,482 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239504   ⟹   XP_006239566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,244 - 161,495,402 (-)NCBI
Rnor_6.05168,088,190 - 168,123,482 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239505   ⟹   XP_006239567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,244 - 161,495,402 (-)NCBI
Rnor_6.05168,088,190 - 168,123,482 (-)NCBI
Rnor_5.05171,665,221 - 171,700,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593652   ⟹   XP_017449141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,404 (-)NCBI
Rnor_6.05168,089,355 - 168,123,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110818   ⟹   XP_038966746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,403 (-)NCBI
RefSeq Acc Id: XM_039110819   ⟹   XP_038966747
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,495,404 (-)NCBI
RefSeq Acc Id: XM_039110820   ⟹   XP_038966748
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,483,774 (-)NCBI
RefSeq Acc Id: XM_039110821   ⟹   XP_038966749
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,460,326 - 161,484,660 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_076468   ⟸   NM_023978
- UniProtKB: Q8CJE2 (UniProtKB/Swiss-Prot),   G3V8D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239567   ⟸   XM_006239505
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006239566   ⟸   XM_006239504
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006239563   ⟸   XM_006239501
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006239564   ⟸   XM_006239502
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006239562   ⟸   XM_006239500
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017449141   ⟸   XM_017593652
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000076026   ⟸   ENSRNOT00000092747
RefSeq Acc Id: ENSRNOP00000024932   ⟸   ENSRNOT00000024932
RefSeq Acc Id: ENSRNOP00000075932   ⟸   ENSRNOT00000093063
RefSeq Acc Id: XP_038966747   ⟸   XM_039110819
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038966746   ⟸   XM_039110818
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966749   ⟸   XM_039110821
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038966748   ⟸   XM_039110820
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000094435   ⟸   ENSRNOT00000108999
Protein Domains
PAC   PAS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CJE2-F1-model_v2 AlphaFold Q8CJE2 1-1119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694287
Promoter ID:EPDNEW_R4812
Type:initiation region
Name:Per3_1
Description:period circadian regulator 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05168,123,419 - 168,123,479EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 168094378 168094379 G A snv CDR, ACI/EurMcwi (MCW), WKY/N (2020), COP/CrCrl (MCW & UW), ACI/N (MCW), WKY/N (MCW), ACI/EurMcwi (RGD), GK/Ox (RGD), LE/Stm (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LEXF11/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019)
5 168095532 168095533 C T snv WN/N (MCW), WN/N (2020)
5 168099268 168099269 C T snv CDS, GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), BBDP/Wor (RGD), F344/NCrl (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 171671473 171671474 G A snv SHR/OlaIpcv (KNAW), DOB/Oda (KyushuU), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/N (KNAW), ACI/EurMcwi (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), BDIX.Cg-Tal/NemOda (KyushuU), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), LE/Stm (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU)
5 171672627 171672628 C T snv WN/N (KNAW)
5 171699538 171699539 A G snv SR/JrHsd (MCW)


Assembly: RGSC_v3.4
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 168158945 168158946 G A snv ACI/EurMcwi (MCW), LCR/2Mco (UMich), SHR/OlaIpcv (ICL), SHRSP/Gcrc (MDC), ACI/N (KNAW), LE/Stm (KNAW), WKY/N (KNAW), SHR/OlaIpcv (KNAW), COP/CrCrl (MCW & UW), ACI/EurMcwi (ICL), GK/Ox (ICL), LE/Stm (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), WKY/NCrl (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), LCR/1Mco (UMich)
5 168186855 168186856 A G snv SR/JrHsd (MCW)


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 161466480 161466481 G A snv ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LEXF11/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020)
5 161467634 161467635 C T snv WN/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621581 AgrOrtholog
BioCyc Gene G2FUF-39044 BioCyc
Ensembl Genes ENSRNOG00000018413 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000024932 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075932 UniProtKB/TrEMBL
  ENSRNOP00000076026 UniProtKB/TrEMBL
  ENSRNOP00000094435 ENTREZGENE
Ensembl Transcript ENSRNOT00000024932 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000092747 UniProtKB/TrEMBL
  ENSRNOT00000093063 UniProtKB/TrEMBL
  ENSRNOT00000108999 ENTREZGENE
InterPro PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Per_circ_prot_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Period_circadian-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:78962 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 78962 ENTREZGENE
PANTHER PTHR11269:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAS_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Period_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Per3 PhenoGen
PROSITE PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GWK7_RAT UniProtKB/TrEMBL
  A0A1B0GWU7_RAT UniProtKB/TrEMBL
  G3V8D9 ENTREZGENE, UniProtKB/TrEMBL
  PER3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-09 Per3  period circadian regulator 3  Per3  period circadian clock 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-02 Per3  period circadian clock 3  Per3  period homolog 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Per3  period homolog 3 (Drosophila)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Per3  period homolog 3 (Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL