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ONTOLOGY REPORT - ANNOTATIONS

Term:regionalization
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Accession:GO:0003002 term browser browse the term
Definition:The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
Synonyms:related_synonym: pattern formation


show annotations for term's descendants           Sort by:
regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:24528677), (PMID:9169845)
GO_REF:0000107 		RGD
Ensembl		 PMID:9169845 PMID:24528677 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within ISO
IEA 		MGI:3836420 (PMID:22939930)
GO_REF:0000107 		RGD
Ensembl		 PMID:22939930 GO_REF:0000107 NCBI chr 3:181,546,742...181,562,890
Ensembl chr 3:161,128,313...161,144,390 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:104903 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		MGI:107405|MGI:98658 (PMID:15004567), (PMID:18241853)
GO_REF:0000107 		RGD
Ensembl		 PMID:15004567 PMID:18241853 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148590 (PMID:10662781)
GO_REF:0000107 		RGD
Ensembl		 PMID:10662781 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA 		(PMID:16434966)
GO_REF:0000107 		RGD
Ensembl		 PMID:16434966 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO
IEA 		MGI:88180 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1341884 (PMID:15680351) RGD PMID:15680351 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA 		MGI:1341800 (PMID:15680351)
GO_REF:0000107 		RGD
Ensembl		 PMID:15680351 GO_REF:0000107 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO
IEA 		MGI:2449177 (PMID:12490556)
GO_REF:0000107 		RGD
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 1:254,813,161...254,838,931
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lefty1 left right determination factor 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1201414 (PMID:15004567) 		GO_Central
Ensembl
RGD		 PMID:15004567 GO_REF:0000033 GO_REF:0000107 NCBI chr13:95,188,091...95,191,488
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Lefty2 Left-right determination factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,610,185...92,620,918
Ensembl chr13:92,615,360...92,619,880 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:2158732 (PMID:11311163)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2447529 (PMID:12183370)
GO_REF:0000107 		RGD
Ensembl		 PMID:12183370 GO_REF:0000107 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA 		(PMID:18321982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18321982 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044914 (PMID:15155583) RGD PMID:15155583 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19841259) 		UniProt
Ensembl
RGD		 PMID:19841259 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902 (PMID:18028899) RGD PMID:18028899 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3580390 (PMID:15870281)
GO_REF:0000107 		RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) RGD PMID:9054360 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA 		(PMID:28839193)
GO_REF:0000107 		RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:9207801) 		UniProt
Ensembl
RGD		 PMID:9207801 GO_REF:0000024 GO_REF:0000107 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
(PMID:9054360) 		Ensembl
RGD		 PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:10452853), (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:10452853 PMID:16991118 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:9916847)
MGI:102806|MGI:1095407|MGI:1857709|MGI:98728 (PMID:10452853), (PMID:15542835), (PMID:16845371), (PMID:16991118), (PMID:9242489)
GO_REF:0000107 		RGD
Ensembl		 PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 More... GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:1096359|MGI:1857891|MGI:2180721|MGI:2679699 (PMID:15652703), (PMID:15872003), (PMID:16368932), (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:108359 (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9847249 GO_REF:0000107 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:104621|MGI:1857484 (PMID:9374397), (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9374397 PMID:9847249 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arc activity-regulated cytoskeleton-associated protein acts_upstream_of_or_within ISO MGI:2386454 (PMID:10727859) RGD PMID:10727859 NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378 		JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578634 (PMID:17855428)
GO_REF:0000107 		RGD
Ensembl		 PMID:17855428 GO_REF:0000107 NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158342 (PMID:15136140)
GO_REF:0000107 		RGD
Ensembl		 PMID:15136140 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO
IEA 		MGI:2158503|MGI:87912 (PMID:10772805), (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:10772805 PMID:15542835 GO_REF:0000107 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:3823037|MGI:3841299 (PMID:18794365), (PMID:18974875)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794365 PMID:18974875 GO_REF:0000107 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3525505 (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:15542835 GO_REF:0000107 NCBI chr13:48,083,931...48,087,690
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA 		MGI:2653120 (PMID:19754878)
GO_REF:0000107 		RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514|MGI:97858 (PMID:11784046), (PMID:7585967)
GO_REF:0000107 		RGD
Ensembl		 PMID:7585967 PMID:11784046 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO
IEA 		MGI:88362 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 acts_upstream_of_or_within ISO
IEA 		MGI:88361 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:2668337|MGI:4430218 (PMID:18849982), (PMID:19357712) RGD PMID:18849982 PMID:19357712 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		(PMID:9501024)
GO_REF:0000107 		RGD
Ensembl		 PMID:9501024 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:97451 (PMID:11412024) 		GO_Central
Ensembl
RGD		 PMID:11412024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:97,033,033...97,067,457
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3045424 (PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr 5:165,245,019...165,293,994
Ensembl chr 5:159,961,928...160,010,939 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2183292|MGI:2679699 (PMID:17067568) RGD PMID:17067568 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:1096359 (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:17067568 GO_REF:0000107 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2148858|MGI:97490 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 1:268,612,663...268,619,671
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2387775 (PMID:11358868)
GO_REF:0000107 		RGD
Ensembl		 PMID:11358868 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:19877275) RGD PMID:19877275 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672|MGI:5544775 (PMID:10391213), (PMID:23918385)
GO_REF:0000107 		RGD
Ensembl		 PMID:10391213 PMID:23918385 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:22841643) RGD PMID:22841643 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276|MGI:3798847|MGI:95728 (PMID:15315762), (PMID:22841643)
GO_REF:0000107 		RGD
Ensembl		 PMID:15315762 PMID:22841643 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO
IEA 		(PMID:16936074)
GO_REF:0000107 		RGD
Ensembl		 PMID:16936074 GO_REF:0000107 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1314872 (PMID:16537918)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537918 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO MGI:1314872 (PMID:16537918) RGD PMID:16537918 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:2670936 (PMID:15872003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15872003 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069|MGI:96182 (PMID:10529420), (PMID:15367676) RGD PMID:10529420 PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA 		MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96184|MGI:96207 (PMID:7913519), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:7913519 PMID:9441667 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxa4 homeo box A4 acts_upstream_of_or_within ISO MGI:2150391|MGI:96185|MGI:96208 (PMID:7628700), (PMID:7918106) RGD PMID:7628700 PMID:7918106 NCBI chr 4:81,289,677...81,291,685
Ensembl chr 4:81,289,682...81,291,685 		JBrowse link
G Hoxa5 homeo box A5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150397|MGI:3723623|MGI:96186|MGI:96196 (PMID:17417799), (PMID:17626057), (PMID:7901120), (PMID:9603431) 		GO_Central
RGD		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000033 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxa6 homeobox A6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150392|MGI:96187|MGI:96197 (PMID:17626057), (PMID:7918106) 		GO_Central
RGD		 PMID:7918106 PMID:17626057 GO_REF:0000033 NCBI chr 4:81,304,918...81,313,184
Ensembl chr 4:81,306,407...81,308,850 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO
IEA 		MGI:96188 (PMID:9784603)
GO_REF:0000107 		RGD
Ensembl		 PMID:9784603 GO_REF:0000107 NCBI chr 4:82,646,342...82,652,449
Ensembl chr 4:81,314,625...81,317,659 		JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (PMID:17626057), (PMID:8625797), (PMID:9013929) 		GO_Central
RGD		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO
IEA 		MGI:96170|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10529420), (PMID:10885747)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529420 PMID:10885747 GO_REF:0000107 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:2151772|MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (PMID:10885747), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7628700), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Hoxb5 homeo box B5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151484|MGI:96177|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96196 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,269,372...81,271,580
Ensembl chr10:81,269,372...81,271,580 		JBrowse link
G Hoxb6 homeo box B6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151485|MGI:96178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190|MGI:96197 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,258,726...81,267,458
Ensembl chr10:81,265,056...81,267,449 		JBrowse link
G Hoxb7 homeo box B7 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9784603) 		GO_Central
Ensembl
RGD		 PMID:9784603 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,749,159...81,752,577
Ensembl chr10:81,252,553...81,256,034 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within ISO MGI:1934178|MGI:2683089|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190|MGI:96198|MGI:96209 (PMID:10559485), (PMID:10885747), (PMID:11311170), (PMID:14623233) RGD PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 NCBI chr10:81,745,430...81,747,181
Ensembl chr10:81,248,887...81,250,638 		JBrowse link
G Hoxb9 homeo box B9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (PMID:10885747), (PMID:17626057), (PMID:9013929) 		GO_Central
RGD		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO
IEA 		MGI:1926422 (PMID:9420327)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420327 GO_REF:0000107 NCBI chr 7:134,058,640...134,065,479
Ensembl chr 7:134,058,640...134,064,800 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:1857570|MGI:2150683 (PMID:8626021), (PMID:8660891)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:8626021 PMID:8660891 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc5 homeo box C5 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96177|MGI:96186 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,150,988...134,154,410
Ensembl chr 7:134,150,988...134,154,410 		JBrowse link
G Hoxc6 homeo box C6 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96178|MGI:96187 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within ISO
IEA 		MGI:2149030|MGI:96189|MGI:96209 (PMID:11311170)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311170 GO_REF:0000107 NCBI chr 7:134,127,937...134,130,503
Ensembl chr 7:134,127,913...134,130,503 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO
IEA 		MGI:2150685|MGI:96180|MGI:96190|MGI:96210 (PMID:17626057), (PMID:7547473)
GO_REF:0000107 		RGD
Ensembl		 PMID:7547473 PMID:17626057 GO_REF:0000107 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96192|MGI:96210 (PMID:10642795), (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:10642795 PMID:12869760 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12869760) RGD PMID:12869760 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA 		MGI:1857871 (PMID:8106170)
GO_REF:0000107 		RGD
Ensembl		 PMID:8106170 GO_REF:0000107 NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within ISO
IEA 		MGI:1857959|MGI:96175|MGI:96184 (PMID:7910549), (PMID:7913519), (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2151488|MGI:96176 (PMID:7628700), (PMID:7750651) 		GO_Central
Ensembl
RGD		 PMID:7628700 PMID:7750651 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:80,021,886...80,041,462
Ensembl chr 3:59,614,464...59,631,528 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within ISO MGI:2151815|MGI:96189|MGI:96198 (PMID:11311170) RGD PMID:11311170 NCBI chr 3:80,015,223...80,017,789
Ensembl chr 3:59,607,996...59,610,361 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150414|MGI:96180|MGI:96190|MGI:96199|MGI:96202 (PMID:10642795), (PMID:17626057), (PMID:8625797) 		GO_Central
Ensembl
RGD		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (PMID:16109169) RGD PMID:16109169 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527|MGI:3027342 (PMID:12701101), (PMID:15930098) RGD PMID:12701101 PMID:15930098 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:1861960 (PMID:10220415) RGD PMID:10220415 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1932339 (PMID:15741318), (PMID:16618927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15741318 PMID:16618927 GO_REF:0000107 NCBI chr 8:54,013,547...54,089,219
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685) 		UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:15142971)
GO_REF:0000107 		RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315|MGI:1861309|MGI:2156191 (PMID:15142971), (PMID:16126904), (PMID:19795512) RGD PMID:15142971 PMID:16126904 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2388982 (PMID:12242306)
GO_REF:0000107 		RGD
Ensembl		 PMID:12242306 GO_REF:0000107 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:97168 (PMID:21465616)
GO_REF:0000107 		RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:2148229 (PMID:16368089) RGD PMID:16368089 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676|MGI:2158732|MGI:2180793|MGI:2656539|MGI:3056345 (PMID:11311163), (PMID:11418863), (PMID:15004567), (PMID:15302604), (PMID:16496285)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579117|MGI:3579118 (PMID:15829524)
GO_REF:0000107 		RGD
Ensembl		 PMID:15829524 GO_REF:0000107 NCBI chr 1:133,419,161...133,434,290
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:97451 (PMID:15105370)
GO_REF:0000107 		RGD
Ensembl		 PMID:15105370 GO_REF:0000107 NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:109448|MGI:1857502|MGI:2661067 (PMID:11412024), (PMID:12652306), (PMID:9501024) RGD PMID:9501024 PMID:11412024 PMID:12652306 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:95388 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2155612 (PMID:11566859)
GO_REF:0000107 		RGD
Ensembl		 PMID:11566859 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:1857633|MGI:1932339 (PMID:15741318), (PMID:8625838) RGD PMID:8625838 PMID:15741318 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IEA 		(PMID:18519639)
GO_REF:0000107 		RGD
Ensembl		 PMID:18519639 GO_REF:0000107 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3847257 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:1926913|MGI:99150 (PMID:11060235), (PMID:16624538) RGD PMID:11060235 PMID:16624538 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:3706668 (PMID:17215307)
GO_REF:0000107 		RGD
Ensembl		 PMID:17215307 GO_REF:0000107 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within ISO MGI:96995|MGI:99161 (PMID:15741318) RGD PMID:15741318 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:892014 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:11118883)
GO_REF:0000107 		RGD
Ensembl		 PMID:11118883 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:1857691|MGI:2668416 (PMID:11418863), (PMID:12842913), (PMID:9529255) 		UniProt
RGD		 PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000024 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857691|MGI:2656539|MGI:2668393 (PMID:15215210)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215210 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2176256|MGI:2450929 (PMID:22987639)
GO_REF:0000107 		RGD
Ensembl		 PMID:22987639 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:104686|MGI:2179191 (PMID:15084464), (PMID:16399080) 		UniProt
RGD		 PMID:15084464 PMID:16399080 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:3042261|MGI:3042262|MGI:3042264 (PMID:15384171)
GO_REF:0000107 		RGD
Ensembl		 PMID:15384171 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16845371)
GO_REF:0000107 		RGD
Ensembl		 PMID:16845371 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (PMID:17586487) RGD PMID:17586487 NCBI chr18:77,376,399...77,452,815
Ensembl chr18:77,377,394...77,453,509 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2388066 (PMID:19334287)
GO_REF:0000107 		RGD
Ensembl		 PMID:19334287 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857642 (PMID:18849982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18849982 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (PMID:10431240) RGD PMID:10431240 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		(PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1857617 (PMID:15073149), (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:15073149 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1101770|MGI:2445451 (PMID:16624538)
GO_REF:0000107 		RGD
Ensembl		 PMID:16624538 GO_REF:0000107 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA 		MGI:2182708 (PMID:10835630)
GO_REF:0000107 		RGD
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO MGI:97359 (PMID:16496285) RGD PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98956 (PMID:11029008) RGD PMID:11029008 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839484 (PMID:20630950)
GO_REF:0000107 		RGD
Ensembl		 PMID:20630950 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:11029008)
GO_REF:0000107 		RGD
Ensembl		 PMID:11029008 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (PMID:7903221) RGD PMID:7903221 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:1856419 (PMID:7925021)
GO_REF:0000107 		RGD
Ensembl		 PMID:7925021 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 Zic family member 2 involved_in ISO MGI:106676 (PMID:17490632) RGD PMID:17490632 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106679 (PMID:17490632) RGD PMID:17490632 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 acts_upstream_of_or_within ISO (PMID:24531968) RGD PMID:24531968 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:23431145) RGD PMID:23431145 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO
IEA 		MGI:5527461 (PMID:22923088), (PMID:23056351)
GO_REF:0000107 		RGD
Ensembl		 PMID:22923088 PMID:23056351 GO_REF:0000107 NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:95388 (PMID:15147765)
GO_REF:0000107 		RGD
Ensembl		 PMID:15147765 GO_REF:0000107 NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2148858|MGI:95387 (PMID:12764040), (PMID:15147765)
GO_REF:0000107 		RGD
Ensembl		 PMID:12764040 PMID:15147765 GO_REF:0000107 NCBI chr 1:268,612,663...268,619,671
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:30186101)
GO_REF:0000107
MGI:2176173|MGI:3802572 (PMID:23431145) 		RGD
Ensembl		 PMID:23431145 PMID:30186101 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:3521756 (PMID:17828260) RGD PMID:17828260 NCBI chr 2:9,776,179...9,785,924
Ensembl chr 2:8,040,377...8,050,123 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1856155 (PMID:12764040), (PMID:23431145)
GO_REF:0000107
(PMID:30186101) 		RGD
Ensembl		 PMID:12764040 PMID:23431145 PMID:30186101 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Tra2b transformer 2 beta acts_upstream_of_or_within ISO
IEA 		MGI:2176173|MGI:4450919 (PMID:24586484)
GO_REF:0000107 		RGD
Ensembl		 PMID:24586484 GO_REF:0000107 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1861919 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:92,689,577...92,698,125
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO
IEA 		MGI:1933734 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr12:19,144,474...19,152,951
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857877 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1860298 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:31887266) RGD PMID:31887266 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO
IEA 		(PMID:22581229)
GO_REF:0000107 		RGD
Ensembl		 PMID:22581229 GO_REF:0000107 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:3722325 (PMID:18043505) 		UniProt
Ensembl
RGD		 PMID:18043505 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:9660951)
GO_REF:0000107 		RGD
Ensembl		 PMID:9660951 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:23063586)
GO_REF:0000107 		RGD
Ensembl		 PMID:23063586 GO_REF:0000107 NCBI chr13:89,310,897...89,403,856
Ensembl chr13:86,778,500...86,871,615 		JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:9660951)
GO_REF:0000107 		RGD
Ensembl		 PMID:9660951 GO_REF:0000107 NCBI chr 5:151,318,752...151,329,948
Ensembl chr 5:151,318,754...151,338,719 		JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (PMID:15750185) RGD PMID:15750185 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO
IBA 		(PMID:15466485)
GO_REF:0000033 		RGD
GO_Central		 PMID:15466485 GO_REF:0000033 NCBI chr19:40,231,061...40,245,329
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA 		(PMID:11076684)
GO_REF:0000107 		RGD
Ensembl		 PMID:11076684 GO_REF:0000107 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857639 (PMID:9576835)
GO_REF:0000107 		RGD
Ensembl		 PMID:9576835 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:23063620)
GO_REF:0000107
MGI:3722325 (PMID:18043505)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18043505 PMID:23063620 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in ISO
IEA 		(PMID:26437028)
GO_REF:0000107 		RGD
Ensembl		 PMID:26437028 GO_REF:0000107 NCBI chr 1:188,480,186...188,485,855
Ensembl chr 1:188,480,186...188,485,855 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO MGI:5445347 (PMID:25192045) RGD PMID:25192045 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:1856184 (PMID:10349618)
GO_REF:0000107 		RGD
Ensembl		 PMID:10349618 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) RGD PMID:15466485 NCBI chr19:40,231,061...40,245,329
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO
IEA 		(PMID:17507406)
GO_REF:0000107 		RGD
Ensembl		 PMID:17507406 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO 		GO_REF:0000107
(PMID:11517919) 		Ensembl
RGD		 PMID:11517919 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 involved_in ISO
IEA 		(PMID:17239842)
GO_REF:0000107 		RGD
Ensembl		 PMID:17239842 GO_REF:0000107 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11517919)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (PMID:24585447) RGD PMID:24585447 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO MGI:1856917 (PMID:18414654) RGD PMID:18414654 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:11959836) RGD PMID:11959836 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA 		MGI:1931734 (PMID:15531373)
GO_REF:0000107 		RGD
Ensembl		 PMID:15531373 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvr1c activin A receptor type 1C NOT|acts_upstream_of_or_within ISO MGI:3512292 (PMID:15485907) RGD PMID:15485907 NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:16991118 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA 		MGI:102806|MGI:1857709 (PMID:16991118), (PMID:9242489)
GO_REF:0000107 		RGD
Ensembl		 PMID:9242489 PMID:16991118 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase acts_upstream_of_or_within ISO
IEA 		MGI:3578146 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 2:138,936,998...138,951,228
Ensembl chr 2:138,936,993...138,951,216 		JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 5:61,309,183...61,350,596
Ensembl chr 5:61,309,183...61,350,596 		JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr14:79,879,482...79,930,778
Ensembl chr14:79,879,533...79,930,778 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Bicc1 BicC family RNA binding protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr20:17,449,639...17,686,775
Ensembl chr20:17,449,560...17,686,776 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO
IEA 		MGI:5708063 (PMID:24947469), (PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:24947469 PMID:25807483 GO_REF:0000107 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:5316786 (PMID:25807483), (PMID:28289722)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit acts_upstream_of_or_within ISO MGI:97359 (PMID:28182636) RGD PMID:28182636 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 involved_in ISO (PMID:26531781) RGD PMID:26531781 NCBI chr18:67,884,651...67,955,873
Ensembl chr18:67,869,855...67,952,318 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2179530 (PMID:10521397), (PMID:25807483) 		GO_Central
Ensembl
RGD		 PMID:10521397 PMID:25807483 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 5:164,358,333...164,393,758
Ensembl chr 5:159,075,343...159,105,369 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:15750185) 		UniProt
RGD		 PMID:15750185 GO_REF:0000024 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Daam2 dishevelled associated activator of morphogenesis 2 acts_upstream_of_or_within ISO
IEA 		MGI:4841108 (PMID:24091014)
GO_REF:0000107 		RGD
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr 9:18,926,620...19,044,672
Ensembl chr 9:11,428,724...11,545,497 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 acts_upstream_of_or_within ISO MGI:3056132|MGI:97359 (PMID:15466485) RGD PMID:15466485 NCBI chr19:40,231,061...40,245,329
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 acts_upstream_of_or_within ISO MGI:5431501 (PMID:25807483), (PMID:28289722) RGD PMID:25807483 PMID:28289722 NCBI chr 9:84,435,552...84,472,632
Ensembl chr 9:84,435,552...84,472,635 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2429759|MGI:2448055 (PMID:12421714), (PMID:15755804) RGD PMID:12421714 PMID:15755804 NCBI chr13:97,252,574...97,398,329
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1861919 (PMID:12730124) RGD PMID:12730124 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Dnaaf3 dynein, axonemal, assembly factor 3 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 1:69,291,300...69,299,365
Ensembl chr 1:69,291,454...69,299,344 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:23872636)
(PMID:25807483)
GO_REF:0000033 		UniProt
Ensembl
RGD
GO_Central		 PMID:23872636 PMID:25807483 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:73,696,394...73,711,315
Ensembl chr 8:73,698,103...73,711,292 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO (PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)
MGI:1856917|MGI:2152963|MGI:4821828 (PMID:10556073), (PMID:25807483), (PMID:27340223), (PMID:9353118) 		RGD PMID:9353118 PMID:10556073 PMID:12142464 PMID:18022865 PMID:22184204 More... MGI:48750 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 acts_upstream_of_or_within ISO
IEA 		(PMID:11788826), (PMID:17515466), (PMID:22499950)
GO_REF:0000107
MGI:2180081|MGI:5285078 (PMID:11912187), (PMID:25807483), (PMID:28289722) 		RGD
Ensembl		 PMID:11788826 PMID:11912187 PMID:17515466 PMID:22499950 PMID:25807483 More... GO_REF:0000107 NCBI chr 2:78,937,788...79,255,551
Ensembl chr 2:78,937,800...79,254,890 		JBrowse link
G Dnai1 dynein, axonemal, intermediate chain 1 acts_upstream_of_or_within ISO
IEA 		(PMID:11231901), (PMID:17515466), (PMID:22499950)
GO_REF:0000107
(PMID:25807483) 		RGD
Ensembl		 PMID:11231901 PMID:17515466 PMID:22499950 PMID:25807483 GO_REF:0000107 NCBI chr 5:61,526,079...61,596,806
Ensembl chr 5:56,730,179...56,800,925 		JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 acts_upstream_of_or_within ISO
IEA 		(PMID:18950741)
GO_REF:0000107 		RGD
Ensembl		 PMID:18950741 GO_REF:0000107 NCBI chr10:99,759,966...99,793,379
Ensembl chr10:99,759,966...99,793,378 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO
IEA 		MGI:4262238 (PMID:21746835)
GO_REF:0000107 		RGD
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Drc1 dynein regulatory complex subunit 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 6:26,025,004...26,059,438
Ensembl chr 6:26,025,005...26,059,414 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578144 (PMID:15755804), (PMID:16061793), (PMID:16229832), (PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:25807483 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:3505858 (PMID:15371312)
GO_REF:0000107 		RGD
Ensembl		 PMID:15371312 GO_REF:0000107 NCBI chr 6:9,992,537...10,025,355
Ensembl chr 6:9,992,541...10,025,336 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:15329346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15329346 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843 (PMID:10411502)
GO_REF:0000107 		RGD
Ensembl		 PMID:10411502 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA 		(PMID:11493558)
GO_REF:0000107 		RGD
Ensembl		 PMID:11493558 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2387775 (PMID:12642485)
GO_REF:0000107 		RGD
Ensembl		 PMID:12642485 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Foxj1 forkhead box J1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25807483)
(PMID:31630787) 		UniProt
Ensembl
RGD		 PMID:25807483 PMID:31630787 GO_REF:0000024 GO_REF:0000107 NCBI chr10:102,065,163...102,069,945
Ensembl chr10:101,566,304...101,570,237 		JBrowse link
G Galnt11 polypeptide N-acetylgalactosaminyltransferase 11 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:9,837,629...9,871,141
Ensembl chr 4:9,837,629...9,871,140 		JBrowse link
G Gas8 growth arrest specific 8 acts_upstream_of_or_within ISO MGI:3870680 (PMID:27472056) RGD PMID:27472056 NCBI chr19:51,552,770...51,572,323
Ensembl chr19:51,552,816...51,572,305 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:2682066 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift74 intraflagellar transport 74 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 5:109,460,372...109,563,839
Ensembl chr 5:109,474,255...109,563,833 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153|MGI:3027342 (PMID:10804177), (PMID:15755804) RGD PMID:10804177 PMID:15755804 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:1861960|MGI:3580660 (PMID:10220415), (PMID:15755804) RGD PMID:10220415 PMID:15755804 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lefty1 left right determination factor 1 involved_in ISO
IEA 		(PMID:9708732)
GO_REF:0000107 		RGD
Ensembl		 PMID:9708732 GO_REF:0000107 NCBI chr13:95,188,091...95,191,488
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA 		MGI:4410614|MGI:4887578 (PMID:19776033), (PMID:21045211)
GO_REF:0000107 		RGD
Ensembl		 PMID:19776033 PMID:21045211 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:26429889), (PMID:26437028)
GO_REF:0000107
(PMID:26437028)
(PMID:25807483) 		RGD
Ensembl		 PMID:25807483 PMID:26429889 PMID:26437028 GO_REF:0000107 NCBI chr 1:188,480,186...188,485,855
Ensembl chr 1:188,480,186...188,485,855 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 4:118,260,323...118,285,038
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nek8 NIMA-related kinase 8 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr10:63,060,868...63,073,546
Ensembl chr10:63,061,253...63,072,416 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1931319 (PMID:15329346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15329346 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO
IEA 		MGI:4151115 (PMID:21746835)
GO_REF:0000107 		RGD
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676|MGI:1344365|MGI:2158732|MGI:2180793|MGI:2388004|MGI:2443893 (PMID:11311163), (PMID:12231623), (PMID:12642485), (PMID:12654299), (PMID:15466485), (PMID:16496285), (PMID:28182636)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 PMID:12231623 PMID:12642485 PMID:12654299 PMID:15466485 More... GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857230|MGI:1857877 (PMID:12730124), (PMID:7789282)
GO_REF:0000107 		RGD
Ensembl		 PMID:7789282 PMID:12730124 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:1933205 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:3053092 (PMID:17884984), (PMID:20350929), (PMID:22357932)
GO_REF:0000107 		RGD
Ensembl		 PMID:17884984 PMID:20350929 PMID:22357932 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA
IBA 		(PMID:18371931)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18371931 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23849778)
GO_REF:0000107
MGI:5311373 (PMID:23849778), (PMID:25807483) 		RGD
Ensembl		 PMID:23849778 PMID:25807483 GO_REF:0000107 NCBI chr17:59,910,665...60,104,929
Ensembl chr17:55,218,991...55,409,399 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO (PMID:25192045)
MGI:5548687 (PMID:25807483), (PMID:31383820) 		RGD PMID:25192045 PMID:25807483 PMID:31383820 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within
involved_in 		ISO MGI:4133392 (PMID:27305836)
(PMID:34715025) 		RGD PMID:27305836 PMID:34715025 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568 		JBrowse link
G Pierce2 piercer of microtubule wall 2 involved_in ISO (PMID:34715025) RGD PMID:34715025 NCBI chr 8:73,715,383...73,719,849
Ensembl chr 8:73,715,383...73,719,849 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within
involved_in 		ISO MGI:1857844|MGI:1857846|MGI:1857880|MGI:2136268|MGI:2384494|MGI:2445428 (PMID:10498698), (PMID:10499586), (PMID:10572050), (PMID:11493526), (PMID:12397115), (PMID:24091014)
(PMID:9708732) 		RGD PMID:9708732 PMID:10498698 PMID:10499586 PMID:10572050 PMID:11493526 More... NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel acts_upstream_of_or_within ISO MGI:2676373 (PMID:12062060) RGD PMID:12062060 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Pskh1 protein serine kinase H1 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr19:33,794,919...33,827,040
Ensembl chr19:33,794,935...33,827,032 		JBrowse link
G Rfx3 regulatory factor X3 acts_upstream_of_or_within ISO
IEA 		MGI:3045792 (PMID:15121860)
GO_REF:0000107 		RGD
Ensembl		 PMID:15121860 GO_REF:0000107 NCBI chr 1:225,449,872...225,709,622
Ensembl chr 1:225,456,187...225,709,402 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3513254 (PMID:17531978) RGD PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rttn rotatin acts_upstream_of_or_within ISO
IEA 		MGI:2674124 (PMID:11900971)
GO_REF:0000107 		RGD
Ensembl		 PMID:11900971 GO_REF:0000107 NCBI chr18:82,220,999...82,398,334
Ensembl chr18:82,221,050...82,398,333 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:10385121), (PMID:10411502), (PMID:10500184)
GO_REF:0000107 		RGD
Ensembl		 PMID:10385121 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553|MGI:2176255 (PMID:12421714), (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:12421714 PMID:15755804 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3512046 (PMID:16155214)
GO_REF:0000107 		RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179191 (PMID:16556915) 		UniProt
RGD		 PMID:16556915 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3652354 (PMID:16705179)
GO_REF:0000107 		RGD
Ensembl		 PMID:16705179 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:31887266) RGD PMID:31887266 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
G Tmem67 transmembrane protein 67 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 5:30,333,793...30,386,702
Ensembl chr 5:25,536,458...25,589,334 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:16291790)
GO_REF:0000107 		RGD
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1857617 (PMID:24091014)
GO_REF:0000107 		RGD
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (PMID:15384171), (PMID:16496285) 		RGD PMID:9354794 PMID:15384171 PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19944405) 		Ensembl
RGD		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:18371931)
GO_REF:0000107 		RGD
Ensembl		 PMID:18371931 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:94,940,311...94,967,920
Ensembl chr13:94,939,741...94,967,920 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA 		(PMID:10330403)
GO_REF:0000107 		RGD
Ensembl		 PMID:10330403 GO_REF:0000107 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2181295 (PMID:12923052)
GO_REF:0000107 		RGD
Ensembl		 PMID:12923052 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148594|MGI:2158470 (PMID:12923052)
GO_REF:0000107 		RGD
Ensembl		 PMID:12923052 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (PMID:11238923) RGD PMID:11238923 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1934347 (PMID:10588713)
GO_REF:0000107 		RGD
Ensembl		 PMID:10588713 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:9192640) 		Ensembl
RGD		 PMID:9192640 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2159246|MGI:2388160 (PMID:11830578), (PMID:11830579)
GO_REF:0000107 		RGD
Ensembl		 PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:15218525)
GO_REF:0000107 		RGD
Ensembl		 PMID:15218525 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:108075|MGI:95728|MGI:95729|MGI:99833 (PMID:28817564) RGD PMID:28817564 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826 		JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within ISO MGI:6887372|MGI:6887373 (PMID:29038301) RGD PMID:29038301 NCBI chr 5:153,515,507...153,516,455
Ensembl chr 5:153,515,376...153,522,508 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA 		MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (PMID:18003640), (PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO
IEA 		MGI:1347476 (PMID:23383217)
GO_REF:0000107 		RGD
Ensembl		 PMID:23383217 GO_REF:0000107 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472|MGI:95841 (PMID:18590716), (PMID:23383217), (PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (PMID:17504940), (PMID:17504941) RGD PMID:17504940 PMID:17504941 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509|MGI:2145349|MGI:2442827|MGI:95729 (PMID:17395647), (PMID:18590716), (PMID:19286674), (PMID:20159594), (PMID:28817564), (PMID:9247260) RGD PMID:9247260 PMID:17395647 PMID:18590716 PMID:19286674 PMID:20159594 More... NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2145349|MGI:2442827|MGI:95728 (PMID:17395647), (PMID:20159594), (PMID:28817564) RGD PMID:17395647 PMID:20159594 PMID:28817564 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within ISO (PMID:26967474) RGD PMID:26967474 NCBI chr13:75,745,678...75,762,307
Ensembl chr13:75,745,680...75,762,298 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1347476 (PMID:9226455)
GO_REF:0000107 		RGD
Ensembl		 PMID:9226455 GO_REF:0000107 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:2443231 (PMID:22689656) RGD PMID:22689656 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within
involved_in 		ISO MGI:1341070|MGI:1861960|MGI:95728 (PMID:18590716), (PMID:19286674)
(PMID:21209331) 		RGD PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO MGI:4887578 (PMID:21045211) RGD PMID:21045211 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) RGD PMID:18590716 NCBI chr 4:5,866,506...5,871,465
Ensembl chr 4:5,866,506...5,871,465 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO
IEA 		(PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18590716 GO_REF:0000107 NCBI chr 5:157,279,623...157,381,188
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO MGI:97760 (PMID:22007132) RGD PMID:22007132 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO MGI:97592 (PMID:22007132) RGD PMID:22007132 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:235,636,885...235,726,198 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284 (PMID:10557208)
GO_REF:0000107 		RGD
Ensembl		 PMID:10557208 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208) RGD PMID:10557208 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857447 (PMID:9262482)
GO_REF:0000107 		RGD
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) RGD PMID:7720556 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO
IEA 		MGI:6393918 (PMID:30177510)
GO_REF:0000107 		RGD
Ensembl		 PMID:30177510 GO_REF:0000107 NCBI chr 5:130,739,173...130,961,386
Ensembl chr 5:130,739,183...130,961,418 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:95655 (PMID:17442700), (PMID:17504941), (PMID:18590716)
GO_REF:0000107
(PMID:21209331) 		RGD
Ensembl		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2176255 (PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18590716 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:95728|MGI:95729 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:3716885 (PMID:16357211)
GO_REF:0000107 		RGD
Ensembl		 PMID:16357211 GO_REF:0000107 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:35353806) RGD PMID:35353806 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (PMID:21945076) RGD PMID:21945076 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2388066|MGI:3664273 (PMID:19223390), (PMID:19286674), (PMID:19334287) 		Ensembl
RGD		 PMID:19223390 PMID:19286674 PMID:19334287 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:1932386|MGI:5315748 (PMID:22689656) RGD PMID:22689656 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:8299937)
GO_REF:0000107 		RGD
Ensembl		 PMID:8299937 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Acvr1 activin A receptor type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:134,117,917...134,135,306
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856035 (PMID:18316368)
GO_REF:0000107 		RGD
Ensembl		 PMID:18316368 GO_REF:0000107 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Bmp1 bone morphogenetic protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:107191 (PMID:15673568)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:15673568 GO_REF:0000033 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:1338938 (PMID:15673568)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:15673568 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrd chordin involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2157350 (PMID:12810603) 		GO_Central
RGD		 PMID:12810603 GO_REF:0000033 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2176173 (PMID:15708565)
GO_REF:0000107 		RGD
Ensembl		 PMID:15708565 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2448055 (PMID:15755804) RGD PMID:15755804 NCBI chr13:97,252,574...97,398,329
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:105373|MGI:3578144|MGI:95729|MGI:98297 (PMID:15755804), (PMID:16061793), (PMID:16229832), (PMID:21552265)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857637 (PMID:15110048)
GO_REF:0000107 		RGD
Ensembl		 PMID:15110048 GO_REF:0000107 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:8684466), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:8684466 PMID:9362463 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:245,189,732...245,191,973
Ensembl chr 1:245,189,736...245,192,007 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA 		MGI:3042750 (PMID:15105374)
GO_REF:0000107 		RGD
Ensembl		 PMID:15105374 GO_REF:0000107 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1857771|MGI:1932522 (PMID:14566948), (PMID:15893304) RGD PMID:14566948 PMID:15893304 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070 (PMID:17504940) RGD PMID:17504940 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727 (PMID:16342201) RGD PMID:16342201 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856275|MGI:1856276 (PMID:12435629), (PMID:14723851), (PMID:16571630)
GO_REF:0000107 		RGD
Ensembl		 PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hhip Hedgehog-interacting protein acts_upstream_of_or_within ISO MGI:105373 (PMID:15576403) RGD PMID:15576403 NCBI chr19:44,768,038...44,856,878
Ensembl chr19:27,863,213...27,952,528 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:11493536)
GO_REF:0000107 		RGD
Ensembl		 PMID:11493536 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626|MGI:96183 (PMID:10230789)
GO_REF:0000107 		RGD
Ensembl		 PMID:10230789 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:96174 (PMID:10230789)
GO_REF:0000107 		RGD
Ensembl		 PMID:10230789 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:11493536) RGD PMID:11493536 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529|MGI:98297 (PMID:15755804), (PMID:21552265) RGD PMID:15755804 PMID:21552265 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:108075|MGI:2682066 (PMID:14603322), (PMID:15755804), (PMID:16061793), (PMID:21552265)
GO_REF:0000107 		RGD
Ensembl		 PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:3027342 (PMID:15755804), (PMID:15930098) RGD PMID:15755804 PMID:15930098 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:3580660 (PMID:15755804) RGD PMID:15755804 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685) 		UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1890208 (PMID:11165475), (PMID:14566948)
GO_REF:0000107 		RGD
Ensembl		 PMID:11165475 PMID:14566948 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2385819 (PMID:18037398)
GO_REF:0000107 		RGD
Ensembl		 PMID:18037398 GO_REF:0000107 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) RGD PMID:10767331 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3621893|MGI:3707955 (PMID:16207730), (PMID:17119023)
GO_REF:0000107 		RGD
Ensembl		 PMID:16207730 PMID:17119023 GO_REF:0000107 NCBI chr 3:77,429,600...77,483,593
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Nog noggin involved_in IEA
ISO 		GO_REF:0000107
(PMID:7666191) 		Ensembl
RGD		 PMID:7666191 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1857063 (PMID:8155581)
GO_REF:0000107 		RGD
Ensembl		 PMID:8155581 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2661067 (PMID:12652306) RGD PMID:12652306 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:3522498 (PMID:16423343)
GO_REF:0000107 		RGD
Ensembl		 PMID:16423343 GO_REF:0000107 NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:2156741|MGI:3521718 (PMID:15548580), (PMID:15878992)
GO_REF:0000107 		RGD
Ensembl		 PMID:15548580 PMID:15878992 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856842|MGI:3521736 (PMID:12183375), (PMID:15459176)
GO_REF:0000107 		RGD
Ensembl		 PMID:12183375 PMID:15459176 GO_REF:0000107 NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434 		JBrowse link
G Ptch1 patched 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1341847 (PMID:15576403) 		UniProt
Ensembl
RGD		 PMID:15576403 GO_REF:0000024 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1932386 (PMID:21552265) 		UniProt
Ensembl
RGD		 PMID:21552265 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553|MGI:2176173|MGI:2176256 (PMID:15755804), (PMID:16571630)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16571630 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:2684137 (PMID:14597661)
GO_REF:0000107 		RGD
Ensembl		 PMID:14597661 GO_REF:0000107 NCBI chr 6:139,816,258...139,818,865
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO
IEA 		MGI:3580099 (PMID:15901664)
GO_REF:0000107 		RGD
Ensembl		 PMID:15901664 GO_REF:0000107 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3698004 (PMID:17082251)
GO_REF:0000107 		RGD
Ensembl		 PMID:17082251 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tll1 tolloid-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:25,509,146...25,710,330
Ensembl chr16:25,509,146...25,709,543 		JBrowse link
G Tll2 tolloid-like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:239,912,648...240,028,168
Ensembl chr 1:239,915,508...240,028,120 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO
IEA 		MGI:1857704 (PMID:7885472), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:7885472 PMID:9362463 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:3583785 (PMID:16314491)
GO_REF:0000107 		RGD
Ensembl		 PMID:16314491 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2179442 (PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2386265 (PMID:9136932) RGD PMID:9136932 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:4819764 (PMID:20643351)
GO_REF:0000107 		RGD
Ensembl		 PMID:20643351 GO_REF:0000107 NCBI chr 2:193,475,785...193,493,092
Ensembl chr 2:193,475,782...193,493,139 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (PMID:9192865) RGD PMID:9192865 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24052814)
GO_REF:0000107 		CAFA
RGD
Ensembl		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1927227 (PMID:9192865)
GO_REF:0000107 		RGD
Ensembl		 PMID:9192865 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:17234970) RGD PMID:17234970 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA
IBA
ISS 		(PMID:21131972)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:21131972 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA
IBA 		(PMID:21131974)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21131974 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 acts_upstream_of_or_within ISO
IEA 		MGI:6509073 (PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr13:84,989,474...85,012,880
Ensembl chr13:84,981,728...85,012,878 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 acts_upstream_of_or_within ISO MGI:6720857 (PMID:33347437) RGD PMID:33347437 NCBI chr18:67,884,651...67,955,873
Ensembl chr18:67,869,855...67,952,318 		JBrowse link
G Dnaaf11 dynein axonemal assembly factor 11 involved_in
acts_upstream_of_or_within 		ISO (PMID:23122589)
MGI:6147714 (PMID:27353389) 		RGD PMID:23122589 PMID:27353389 NCBI chr 7:98,141,525...98,245,906
Ensembl chr 7:98,144,763...98,245,837 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO MGI:1856917 (PMID:10549278), (PMID:22102620) RGD PMID:10549278 PMID:22102620 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (PMID:10549278) RGD PMID:10549278 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350 		JBrowse link
G Megf8 multiple EGF-like-domains 8 NOT|acts_upstream_of_or_within ISO MGI:3722325 (PMID:18043505) RGD PMID:18043505 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO MGI:5548687 (PMID:31383820) RGD PMID:31383820 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:27486780)
GO_REF:0000107
MGI:6110171 (PMID:27486780) 		RGD
Ensembl		 PMID:27486780 GO_REF:0000107 NCBI chr10:85,480,089...85,508,603
Ensembl chr10:85,480,094...85,508,603 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA 		(PMID:16311594)
GO_REF:0000107 		RGD
Ensembl		 PMID:16311594 GO_REF:0000107 NCBI chr  X:28,015,347...28,056,115
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
G Rfx3 regulatory factor X3 involved_in ISO
IEA 		(PMID:15121860)
GO_REF:0000107 		RGD
Ensembl		 PMID:15121860 GO_REF:0000107 NCBI chr 1:225,449,872...225,709,622
Ensembl chr 1:225,456,187...225,709,402 		JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:5056368 (PMID:29317443)
GO_REF:0000107 		RGD
Ensembl		 PMID:29317443 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 involved_in ISO
IEA 		(PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr13:84,989,474...85,012,880
Ensembl chr13:84,981,728...85,012,878 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 involved_in ISO
IEA 		(PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr10:52,613,761...52,654,922
Ensembl chr10:52,613,762...52,654,934 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains involved_in ISO (PMID:39753129) RGD PMID:39753129 NCBI chr 5:164,358,333...164,393,758
Ensembl chr 5:159,075,343...159,105,369 		JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:5526981|MGI:5532530 (PMID:23525783), (PMID:31107948)
GO_REF:0000107 		RGD
Ensembl		 PMID:23525783 PMID:31107948 GO_REF:0000107 NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199 		JBrowse link
G Enkur enkurin, TRPC channel interacting protein involved_in
acts_upstream_of_or_within 		ISO (PMID:29257953)
MGI:6156078 (PMID:29257953) 		RGD PMID:29257953 NCBI chr17:83,690,105...83,714,756
Ensembl chr17:83,690,797...83,714,408 		JBrowse link
G Pierce1 piercer of microtubule wall 1 involved_in ISO (PMID:27305836) RGD PMID:27305836 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16720875) RGD PMID:16720875 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:1859823 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:1920441 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:2450901|MGI:98953 (PMID:18094027) RGD PMID:18094027 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:102764 (PMID:18094027)
GO_REF:0000107 		RGD
Ensembl		 PMID:18094027 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843|MGI:2150348 (PMID:16613831)
GO_REF:0000107 		RGD
Ensembl		 PMID:16613831 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:10625551)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625551 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:11060228), (PMID:11124115), (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857494 (PMID:10393115), (PMID:11163262), (PMID:11830575)
GO_REF:0000107 		RGD
Ensembl		 PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:11050125), (PMID:11124115), (PMID:18701439), (PMID:24528677)
GO_REF:0000107 		RGD
Ensembl		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO
IEA 		MGI:2152544 (PMID:19732765)
GO_REF:0000107 		RGD
Ensembl		 PMID:19732765 GO_REF:0000107 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:3775846|MGI:3840448 (PMID:24528677)
GO_REF:0000107 		RGD
Ensembl		 PMID:24528677 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO
IEA 		(PMID:15164427)
GO_REF:0000107 		RGD
Ensembl		 PMID:15164427 GO_REF:0000107 NCBI chr 2:195,142,573...195,156,945
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO
IEA 		(PMID:15164427)
GO_REF:0000107 		RGD
Ensembl		 PMID:15164427 GO_REF:0000107 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:9169845)
GO_REF:0000107 		RGD
Ensembl		 PMID:9169845 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:26295701)
GO_REF:0000107 		RGD
Ensembl		 PMID:26295701 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA
ISS 		(PMID:19736317)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19736317 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS
IEA 		(PMID:20702560)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO
IEA 		(PMID:18297060)
GO_REF:0000107 		RGD
Ensembl		 PMID:18297060 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Gata5 GATA binding protein 5 involved_in ISO
IEA 		(PMID:21633169)
GO_REF:0000107 		RGD
Ensembl		 PMID:21633169 GO_REF:0000107 NCBI chr 3:187,796,140...187,804,327
Ensembl chr 3:167,418,565...167,426,751 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:18297060), (PMID:18593560)
GO_REF:0000107 		RGD
Ensembl		 PMID:18297060 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:24,067,869...25,108,694
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:26,015,919...27,583,750
Ensembl chr11:12,528,951...13,041,536 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Aplnr apelin receptor involved_in ISO
IEA 		(PMID:23603510)
GO_REF:0000107 		RGD
Ensembl		 PMID:23603510 GO_REF:0000107 NCBI chr 3:90,624,055...90,627,700
Ensembl chr 3:70,217,385...70,221,050 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:22554696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Asb2 ankyrin repeat and SOCS box-containing 2 involved_in ISO (PMID:32179481) RGD PMID:32179481 NCBI chr 6:122,474,754...122,511,014
Ensembl chr 6:122,474,756...122,510,854 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA
IBA 		(PMID:22693285)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22693285 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179530 (PMID:10521397)
GO_REF:0000107 		RGD
Ensembl		 PMID:10521397 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (PMID:15750185) RGD PMID:15750185 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) RGD PMID:12730124 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944400), (PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944400 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO
IEA 		(PMID:22581229)
GO_REF:0000107 		RGD
Ensembl		 PMID:22581229 GO_REF:0000107 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO
IEA 		UniProtKB:Q60838 (PMID:22841628)
GO_REF:0000107 		RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IEA 		UniProtKB:P51141 (PMID:22841628)
GO_REF:0000107 		RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Eng endoglin involved_in ISO (PMID:10348742), (PMID:19703439) RGD PMID:10348742 PMID:19703439 NCBI chr 3:36,332,190...36,370,324
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843 (PMID:10411502)
GO_REF:0000107 		RGD
Ensembl		 PMID:10411502 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO
IEA 		(PMID:17286298)
GO_REF:0000107 		RGD
Ensembl		 PMID:17286298 GO_REF:0000107 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO
IEA 		(PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (PMID:15310850) RGD PMID:15310850 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9486664) RGD PMID:9486664 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153823 (PMID:9500551)
GO_REF:0000107 		RGD
Ensembl		 PMID:9500551 GO_REF:0000107 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857639 (PMID:9171826)
GO_REF:0000107 		RGD
Ensembl		 PMID:9171826 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2179429 (PMID:14659802)
GO_REF:0000107 		RGD
Ensembl		 PMID:14659802 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:3829198 (PMID:18930042)
GO_REF:0000107 		RGD
Ensembl		 PMID:18930042 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA 		MGI:3707373 (PMID:17027958)
GO_REF:0000107 		RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO
IEA 		(PMID:11517919)
GO_REF:0000107 		RGD
Ensembl		 PMID:11517919 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) RGD PMID:25463925 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2181727 (PMID:10330409) RGD PMID:10330409 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2386948 (PMID:12522123)
GO_REF:0000107 		RGD
Ensembl		 PMID:12522123 GO_REF:0000107 NCBI chr 1:244,083,873...244,085,690
Ensembl chr 1:244,083,873...244,085,690 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:16680724) 		UniProt
RGD		 PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:10393122)
GO_REF:0000107 		RGD
Ensembl		 PMID:10393122 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603514 (PMID:16000382)
GO_REF:0000107 		RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:1,802,519...1,926,988
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:166,345,853...166,530,575
Ensembl chr 1:166,345,859...166,471,719
Ensembl chr 1:166,345,859...166,471,719 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1927227 (PMID:16510504), (PMID:7628699), (PMID:9192865)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676 (PMID:16496285)
GO_REF:0000107 		RGD
Ensembl		 PMID:16496285 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA 		UniProtKB:O35516 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124) 		Ensembl
RGD		 PMID:12730124 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:3053092 (PMID:17884984)
GO_REF:0000107 		RGD
Ensembl		 PMID:17884984 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:18371931), (PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:18371931 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:3777011 (PMID:17573777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17573777 GO_REF:0000107 NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284 (PMID:10557208)
GO_REF:0000107 		RGD
Ensembl		 PMID:10557208 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1857796 (PMID:10411502), (PMID:10500184)
GO_REF:0000107
(PMID:11517919) 		RGD
Ensembl		 PMID:10411502 PMID:10500184 PMID:11517919 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11517919)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2179440 (PMID:17610846)
GO_REF:0000107
(PMID:17610846), (PMID:17655922) 		RGD
Ensembl		 PMID:17610846 PMID:17655922 GO_REF:0000107 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:2385465|MGI:2386742 (PMID:15929941)
GO_REF:0000107 		RGD
Ensembl		 PMID:15929941 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3512046 (PMID:16155214)
GO_REF:0000107 		RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:3579849|MGI:3580099 (PMID:15843407), (PMID:15901664)
GO_REF:0000107
GO_REF:0000033
(PMID:15843409) 		RGD
Ensembl
GO_Central		 PMID:15843407 PMID:15843409 PMID:15901664 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:2655214|MGI:3769504 (PMID:17460765), (PMID:18723448)
GO_REF:0000107 		RGD
Ensembl		 PMID:17460765 PMID:18723448 GO_REF:0000107 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA 		(PMID:17050629)
GO_REF:0000107 		RGD
Ensembl		 PMID:17050629 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4343479|MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in ISO
IEA 		(PMID:11440971)
GO_REF:0000107 		RGD
Ensembl		 PMID:11440971 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:16291790)
GO_REF:0000107 		RGD
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (PMID:15384171), (PMID:16496285) 		RGD PMID:9354794 PMID:15384171 PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:22554696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) RGD PMID:12730124 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3578147 (PMID:20678497)
GO_REF:0000107 		RGD
Ensembl		 PMID:20678497 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:2682066|MGI:3829198 (PMID:18930042), (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:18930042 PMID:22554696 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift25 intraflagellar transport 25 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (PMID:22595669) RGD PMID:22595669 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421 		JBrowse link
G Mns1 meiosis-specific nuclear structural 1 acts_upstream_of_or_within ISO
IEA 		MGI:5425368 (PMID:22396656)
GO_REF:0000107 		RGD
Ensembl		 PMID:22396656 GO_REF:0000107 NCBI chr 8:73,148,877...73,169,570
Ensembl chr 8:73,148,877...73,176,925 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA 		UniProtKB:O35516 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124) 		Ensembl
RGD		 PMID:12730124 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553 (PMID:9636176)
GO_REF:0000107 		RGD
Ensembl		 PMID:9636176 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (PMID:17127413) RGD PMID:17127413 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 NOT|acts_upstream_of_or_within ISO MGI:3512139 (PMID:21203428) RGD PMID:21203428 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944400)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944400 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO
IEA 		(PMID:20080492)
GO_REF:0000107 		RGD
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Foxj1 forkhead box J1 acts_upstream_of_or_within ISO
IEA 		MGI:2158221 (PMID:10873152)
GO_REF:0000107 		RGD
Ensembl		 PMID:10873152 GO_REF:0000107 NCBI chr10:102,065,163...102,069,945
Ensembl chr10:101,566,304...101,570,237 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA 		MGI:3707373 (PMID:17027958)
GO_REF:0000107 		RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:23063620)
GO_REF:0000107
(PMID:24052814)
(PMID:32203821), (PMID:32966817)
GO_REF:0000024 		RGD
Ensembl
CAFA		 PMID:23063620 PMID:24052814 PMID:32203821 PMID:32966817 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO
IEA 		(PMID:34486668)
GO_REF:0000107 		RGD
Ensembl		 PMID:34486668 GO_REF:0000107 NCBI chr 1:175,217,680...175,288,521
Ensembl chr 1:175,217,545...175,288,334 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO
IEA 		MGI:4151115 (PMID:20080492)
GO_REF:0000107 		RGD
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:4949891 (PMID:20080492) RGD PMID:20080492 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2183156 (PMID:16801545)
GO_REF:0000107 		RGD
Ensembl		 PMID:16801545 GO_REF:0000107 NCBI chr 3:176,667,476...176,671,965
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:5476827 (PMID:23184148), (PMID:23303524) RGD PMID:23184148 PMID:23303524 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2148569 (PMID:19686689), (PMID:19805295)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:1261834 (PMID:19686689) RGD PMID:19686689 NCBI chr 4:47,294,300...47,340,284
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO
IEA 		MGI:98954 (PMID:19686689)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 GO_REF:0000107 NCBI chr 2:195,142,573...195,156,945
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		(PMID:15531758)
GO_REF:0000107 		RGD
Ensembl		 PMID:15531758 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647|MGI:95729 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16720875) RGD PMID:16720875 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1099809 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:2687297 (PMID:16720875) RGD PMID:16720875 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:15634693)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:15634693 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:15607945)
GO_REF:0000107 		RGD
Ensembl		 PMID:15607945 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:2150347 (PMID:17601531)
GO_REF:0000107 		RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:11029008), (PMID:19795512) RGD PMID:11029008 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857490 (PMID:2205396)
GO_REF:0000107 		RGD
Ensembl		 PMID:2205396 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15857913) 		Ensembl
RGD		 PMID:15857913 GO_REF:0000107 NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856382 (PMID:8555108)
GO_REF:0000107 		RGD
Ensembl		 PMID:8555108 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:104877 (PMID:11500373)
GO_REF:0000107 		RGD
Ensembl		 PMID:11500373 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11522634) RGD PMID:11522634 NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA 		(PMID:16434966)
GO_REF:0000107 		RGD
Ensembl		 PMID:16434966 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Sostdc1 sclerostin domain containing 1 involved_in ISO
IEA 		(PMID:15020244)
GO_REF:0000107 		RGD
Ensembl		 PMID:15020244 GO_REF:0000107 NCBI chr 6:58,778,623...58,782,797
Ensembl chr 6:53,051,354...53,055,579 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO 		GO_REF:0000024
(PMID:23806618) 		UniProt
RGD		 PMID:23806618 GO_REF:0000024 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA 		(PMID:23806618)
GO_REF:0000107 		RGD
Ensembl		 PMID:23806618 GO_REF:0000107 NCBI chr  X:28,015,347...28,056,115
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA 		(PMID:15042700)
GO_REF:0000107 		RGD
Ensembl		 PMID:15042700 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23072809)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:19,144,474...19,152,951
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) RGD PMID:23332756 NCBI chr13:77,578,257...77,623,661
Ensembl chr13:77,577,739...77,619,613 		JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12755329) 		Ensembl
RGD		 PMID:12755329 GO_REF:0000107 NCBI chr 2:196,029,206...196,053,848
Ensembl chr 2:196,029,434...196,053,845 		JBrowse link
G Nog noggin involved_in IEA
ISO 		GO_REF:0000107
(PMID:8582276) 		Ensembl
RGD		 PMID:8582276 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:17584735) RGD PMID:17584735 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
neural plate mediolateral regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in ISO
IEA 		(PMID:23014696)
GO_REF:0000107 		RGD
Ensembl		 PMID:23014696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like acts_upstream_of_or_within ISO
IEA 		MGI:2442827 (PMID:29487109)
GO_REF:0000107 		RGD
Ensembl		 PMID:29487109 GO_REF:0000107 NCBI chr 8:100,188,414...100,229,077
Ensembl chr 8:100,194,999...100,228,988 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA 		MGI:4458412 (PMID:24009529)
GO_REF:0000107 		RGD
Ensembl		 PMID:24009529 GO_REF:0000107 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA 		(PMID:8681379)
GO_REF:0000107 		RGD
Ensembl		 PMID:8681379 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		MGI:1919757 (PMID:29487109)
GO_REF:0000107 		RGD
Ensembl		 PMID:29487109 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) RGD PMID:22698544 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:4129326 (PMID:21945076)
GO_REF:0000107 		RGD
Ensembl		 PMID:21945076 GO_REF:0000107 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
organ induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857137 (PMID:9806931)
GO_REF:0000107 		RGD
Ensembl		 PMID:9806931 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fgf1 fibroblast growth factor 1 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr18:30,937,670...31,023,786
Ensembl chr18:30,686,581...30,772,357 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IDA
IEA
ISO 		PMID:10964474
GO_REF:0000107
MGI:95517 (PMID:12810586) 		Ensembl
RGD		 PMID:12810586 PMID:10964474 GO_REF:0000107, RGD:8554722 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA 		(PMID:15576401)
GO_REF:0000107 		RGD
Ensembl		 PMID:15576401 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:12810586), (PMID:15741321) RGD PMID:12810586 PMID:15741321 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:95517 (PMID:15741321)
GO_REF:0000107 		RGD
Ensembl		 PMID:15741321 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA 		(PMID:15576401)
GO_REF:0000107 		RGD
Ensembl		 PMID:15576401 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr17:9,466,686...9,481,423
Ensembl chr17:9,461,547...9,476,242 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3521833 (PMID:15569927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gdnf glial cell derived neurotrophic factor acts_upstream_of_or_within ISO
IEA 		MGI:1345139 (PMID:15691764)
GO_REF:0000107 		RGD
Ensembl		 PMID:15691764 GO_REF:0000107 NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12050119)
GO_REF:0000107 		RGD
Ensembl		 PMID:12050119 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12050119)
GO_REF:0000107 		RGD
Ensembl		 PMID:12050119 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12050119) RGD PMID:12050119 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2655195 (PMID:12783782)
GO_REF:0000107 		RGD
Ensembl		 PMID:12783782 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within ISO
IEA 		MGI:3574404 (PMID:15691764)
GO_REF:0000107 		RGD
Ensembl		 PMID:15691764 GO_REF:0000107 NCBI chr 2:120,557,256...120,561,917
Ensembl chr 2:120,556,706...120,566,189 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:44,578,536...44,581,187
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21383078)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11044396)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11044396 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		(PMID:14511481)
GO_REF:0000107 		RGD
Ensembl		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA 		(PMID:19506109)
GO_REF:0000107 		RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:18316368)
GO_REF:0000107 		RGD
Ensembl		 PMID:18316368 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:18316368) RGD PMID:18316368 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
primary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:16680724) 		UniProt
RGD		 PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO
IEA 		UniProtKB:P22725 (PMID:22569553)
GO_REF:0000107 		RGD
Ensembl		 PMID:22569553 GO_REF:0000107 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P48615 (PMID:22569553) 		Ensembl
RGD		 PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1891557 (PMID:23552073)
GO_REF:0000107 		RGD
Ensembl		 PMID:23552073 GO_REF:0000107 NCBI chr11:35,021,536...35,038,322
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:11291865)
MGI:1857725 (PMID:11291865) 		UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA 		MGI:4999724|MGI:97359 (PMID:21445260)
GO_REF:0000107 		RGD
Ensembl		 PMID:21445260 GO_REF:0000107 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11291865)
MGI:1857502|MGI:1857848 (PMID:11291865) 		UniProt
Ensembl
RGD		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96086 (PMID:14511481), (PMID:21445260) 		Ensembl
RGD		 PMID:14511481 PMID:21445260 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in 		ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:4356107 (PMID:19706528) 		Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:2158696 (PMID:9799237)
GO_REF:0000107 		RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:12435636) 		UniProt
RGD		 PMID:12435636 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12435636) 		UniProt
Ensembl
RGD		 PMID:12435636 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO
IEA 		MGI:3716756 (PMID:17317769)
GO_REF:0000107 		RGD
Ensembl		 PMID:17317769 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:12163408) RGD PMID:12163408 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
proximal/distal pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:2180721 (PMID:14623241), (PMID:15069081)
GO_REF:0000107 		RGD
Ensembl		 PMID:14623241 PMID:15069081 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1856318 (PMID:16887818) RGD PMID:16887818 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148594 (PMID:12885771)
GO_REF:0000107 		RGD
Ensembl		 PMID:12885771 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:3039046 (PMID:15030763)
GO_REF:0000107 		RGD
Ensembl		 PMID:15030763 GO_REF:0000107 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22529374) 		UniProt
RGD		 PMID:22529374 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857826|MGI:94902 (PMID:9187081)
GO_REF:0000107 		RGD
Ensembl		 PMID:9187081 GO_REF:0000107 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857828|MGI:94901 (PMID:9187081)
GO_REF:0000107 		RGD
Ensembl		 PMID:9187081 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:8684466), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:8684466 PMID:9362463 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727|MGI:95729 (PMID:16342201) RGD PMID:16342201 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276|MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:3054923 (PMID:12808456) RGD PMID:12808456 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA 		MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:96210 (PMID:8625797) 		GO_Central
RGD		 PMID:8625797 GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb9 homeo box B9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96192 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12869760) RGD PMID:12869760 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150414|MGI:96180 (PMID:8625797) 		GO_Central
Ensembl
RGD		 PMID:8625797 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3707955 (PMID:17119023)
GO_REF:0000107 		RGD
Ensembl		 PMID:17119023 GO_REF:0000107 NCBI chr 3:77,429,600...77,483,593
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1341793|MGI:2155612 (PMID:11566859), (PMID:16672333)
GO_REF:0000107 		RGD
Ensembl		 PMID:11566859 PMID:16672333 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO MGI:97495 (PMID:16672333) RGD PMID:16672333 NCBI chr20:4,156,107...4,161,503
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:2684137 (PMID:14597661)
GO_REF:0000107 		RGD
Ensembl		 PMID:14597661 GO_REF:0000107 NCBI chr 6:139,816,258...139,818,865
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA 		MGI:1934580 (PMID:10227293)
GO_REF:0000107 		RGD
Ensembl		 PMID:10227293 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378 		JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:15,211,878...15,215,317 		JBrowse link
radial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579117|MGI:3579118 (PMID:15829524)
GO_REF:0000107 		RGD
Ensembl		 PMID:15829524 GO_REF:0000107 NCBI chr 1:133,419,161...133,434,290
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
regulation of adaxial/abaxial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA 		MGI:95286 (PMID:17107999)
GO_REF:0000107 		RGD
Ensembl		 PMID:17107999 GO_REF:0000107 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO
IEA 		MGI:88174 (PMID:17107999)
GO_REF:0000107 		RGD
Ensembl		 PMID:17107999 GO_REF:0000107 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,815,351...162,828,325
Ensembl chr 5:162,815,357...162,828,375 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:22015720)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:22015720 GO_REF:0000024 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO
IEA 		(PMID:22015720)
GO_REF:0000107 		RGD
Ensembl		 PMID:22015720 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:26114479) 		UniProt
RGD		 PMID:26114479 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3512139|MGI:97487 (PMID:17974128)
GO_REF:0000107 		RGD
Ensembl		 PMID:17974128 GO_REF:0000107 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19061953)
GO_REF:0000107
MGI:1933734 (PMID:19779553) 		RGD
Ensembl		 PMID:19061953 PMID:19779553 GO_REF:0000107 NCBI chr12:19,144,474...19,152,951
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857230 (PMID:7789282)
GO_REF:0000107 		RGD
Ensembl		 PMID:7789282 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1330307|MGI:1856173 (PMID:17974128) RGD PMID:17974128 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA 		MGI:1857632 (PMID:8887324)
GO_REF:0000107 		RGD
Ensembl		 PMID:8887324 GO_REF:0000107 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA 		MGI:2179440 (PMID:19913509)
GO_REF:0000107 		RGD
Ensembl		 PMID:19913509 GO_REF:0000107 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
secondary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:96522 (PMID:22711842)
GO_REF:0000107 		RGD
Ensembl		 PMID:22711842 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:20702560) 		Ensembl
UniProt
RGD		 PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO
IEA 		(PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO
IEA 		(PMID:20520780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20520780 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:26822476)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:26822476 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:54,189,308...54,346,708 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:15890826) 		UniProt
RGD		 PMID:15890826 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:18593560)
GO_REF:0000107 		RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1270862|MGI:3583755 (PMID:22711842) RGD PMID:22711842 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 acts_upstream_of_or_within ISO
IEA 		MGI:2148567 (PMID:17519332)
GO_REF:0000107 		RGD
Ensembl		 PMID:17519332 GO_REF:0000107 NCBI chr 4:11,441,142...11,472,781
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO
IEA 		UniProtKB:P22725 (PMID:22569553)
GO_REF:0000107 		RGD
Ensembl		 PMID:22569553 GO_REF:0000107 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P48615 (PMID:22569553) 		Ensembl
RGD		 PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2429760 (PMID:12421720)
GO_REF:0000107 		RGD
Ensembl		 PMID:12421720 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:2157803 (PMID:12701106)
GO_REF:0000107 		RGD
Ensembl		 PMID:12701106 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2388982 (PMID:12242306)
GO_REF:0000107 		RGD
Ensembl		 PMID:12242306 GO_REF:0000107 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811) RGD PMID:11124811 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (PMID:21059868) RGD PMID:21059868 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO
IEA 		MGI:1856658 (PMID:15537664)
GO_REF:0000107 		RGD
Ensembl		 PMID:15537664 GO_REF:0000107 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IEA 		UniProtKB:P51140 (PMID:8887313)
GO_REF:0000107 		RGD
Ensembl		 PMID:8887313 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857974|MGI:1932738 (PMID:11262239), (PMID:16079160)
GO_REF:0000107 		RGD
Ensembl		 PMID:11262239 PMID:16079160 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		PMID:10479455
GO_REF:0000107
MGI:1933845 (PMID:10479455) 		Ensembl
RGD		 PMID:10479455 PMID:10479455 GO_REF:0000107, RGD:8554019 NCBI chr 1:105,030,035...105,032,866
Ensembl chr 1:95,893,457...95,897,243 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:2442827|MGI:95729 (PMID:17395647), (PMID:20159594) RGD PMID:17395647 PMID:20159594 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:2442827|MGI:95728 (PMID:17395647), (PMID:20159594)
GO_REF:0000107 		RGD
Ensembl		 PMID:17395647 PMID:20159594 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:2443231 (PMID:22689656) RGD PMID:22689656 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		MGI:95728|MGI:95729 (PMID:20159594)
GO_REF:0000107 		RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:3664273 (PMID:19223390)
GO_REF:0000107 		RGD
Ensembl		 PMID:19223390 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA 		MGI:1932386|MGI:5315748 (PMID:22689656)
GO_REF:0000107 		RGD
Ensembl		 PMID:22689656 GO_REF:0000107 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:15215207)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:4840420 (PMID:19684112)
GO_REF:0000107 		RGD
Ensembl		 PMID:19684112 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:15215207)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:4840420 (PMID:19684112)
GO_REF:0000107 		RGD
Ensembl		 PMID:19684112 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA 		MGI:5448825 (PMID:22949634)
GO_REF:0000107 		RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857502|MGI:1857848 (PMID:11291865)
GO_REF:0000107 		RGD
Ensembl		 PMID:11291865 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3580268 (PMID:20346937) 		GO_Central
RGD		 PMID:20346937 GO_REF:0000033 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO
IEA 		MGI:5438570 (PMID:21998026)
GO_REF:0000107 		RGD
Ensembl		 PMID:21998026 GO_REF:0000107 NCBI chr 3:28,390,745...28,393,299
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3614797 (PMID:20346937)
(PMID:16326386) 		RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1858049 (PMID:9420335)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA 		(PMID:20346937)
GO_REF:0000107 		RGD
Ensembl		 PMID:20346937 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:3038950 (PMID:14960495) RGD PMID:14960495 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:103219 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:103220 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr17:85,098,837...85,179,829
Ensembl chr17:85,098,550...85,179,792 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1100864|MGI:1857891 (PMID:15872003) RGD PMID:15872003 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (PMID:16687486) RGD PMID:16687486 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:12636920)
GO_REF:0000107 		RGD
Ensembl		 PMID:12636920 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22072575) 		CAFA
RGD		 PMID:22072575 GO_REF:0000024 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:892014 (PMID:18257070) RGD PMID:18257070 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:23072809)
MGI:1096325 (PMID:15902259) 		UniProt
RGD		 PMID:15902259 PMID:23072809 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:15170697), (PMID:9272948) RGD PMID:9272948 PMID:15170697 NCBI chr 1:92,689,577...92,698,125
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO MGI:1343101 (PMID:15937931) RGD PMID:15937931 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (PMID:18064677) RGD PMID:18064677 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO
IEA 		UniProtKB:Q61850 (PMID:11562355)
GO_REF:0000107 		RGD
Ensembl		 PMID:11562355 GO_REF:0000107 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO UniProtKB:Q61572 (PMID:11562355) RGD PMID:11562355 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA 		MGI:1929432 (PMID:11124112)
GO_REF:0000107 		RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222|MGI:3046536 (PMID:11641270), (PMID:15170214), (PMID:19779553) RGD PMID:11641270 PMID:15170214 PMID:19779553 NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1276116|MGI:3711317 (PMID:15937931), (PMID:17325035)
GO_REF:0000107 		RGD
Ensembl		 PMID:15937931 PMID:17325035 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1933764|MGI:98504 (PMID:10090727), (PMID:15545629)
GO_REF:0000107 		RGD
Ensembl		 PMID:10090727 PMID:15545629 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23072809)
MGI:3775061 (PMID:18234727) 		UniProt
Ensembl
RGD		 PMID:18234727 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:19,144,474...19,152,951
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982|MGI:98958 (PMID:15469977), (PMID:19795512) RGD PMID:15469977 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839486 (PMID:20589884)
GO_REF:0000107 		RGD
Ensembl		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:104659|MGI:3580268 (PMID:15902259) RGD PMID:15902259 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603514 (PMID:16000382)
GO_REF:0000107 		RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:1,802,519...1,926,988
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811), (PMID:21750544) RGD PMID:11124811 PMID:21750544 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219|MGI:1857973|MGI:2449231 (PMID:10929709), (PMID:19531352), (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO
IEA 		MGI:1857220 (PMID:7588068)
GO_REF:0000107 		RGD
Ensembl		 PMID:7588068 GO_REF:0000107 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:50,883,661...50,886,253
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:5553357 (PMID:24875805)
GO_REF:0000107 		RGD
Ensembl		 PMID:24875805 GO_REF:0000107 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5317888 (PMID:21795391) RGD PMID:21795391 NCBI chr 3:28,390,745...28,393,299
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO
IEA 		MGI:3801303 (PMID:20484223)
GO_REF:0000107 		RGD
Ensembl		 PMID:20484223 GO_REF:0000107 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603176 (PMID:16093716)
GO_REF:0000107 		RGD
Ensembl		 PMID:16093716 GO_REF:0000107 NCBI chr 3:155,244,961...155,254,836
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO
IEA 		(PMID:12591245)
GO_REF:0000107 		RGD
Ensembl		 PMID:12591245 GO_REF:0000107 NCBI chr15:55,198,470...55,203,039
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Plxna2 plexin A2 involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2662305 (PMID:12697902)
GO_REF:0000107 		RGD
Ensembl		 PMID:12697902 GO_REF:0000107 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2137554 (PMID:9636176)
GO_REF:0000107 		RGD
Ensembl		 PMID:9636176 GO_REF:0000107 NCBI chr11:75,704,119...75,731,964
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO
IEA 		MGI:107202 (PMID:16687486)
GO_REF:0000107 		RGD
Ensembl		 PMID:16687486 GO_REF:0000107 NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284|MGI:1930934 (PMID:10557208), (PMID:19779553), (PMID:9153393)
GO_REF:0000107 		RGD
Ensembl		 PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208), (PMID:19779553) RGD PMID:10557208 PMID:19779553 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1857411 (PMID:19779553) RGD PMID:19779553 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3513254 (PMID:17531978)
(PMID:16326386) 		RGD PMID:16326386 PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr 4:18,538,452...18,702,453
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:10654605)
MGI:108078|MGI:1329040 (PMID:16467359), (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:10654605 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1329040|MGI:892014 (PMID:16467359), (PMID:18257070) 		Ensembl
RGD		 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA 		MGI:3606185 (PMID:28893950)
GO_REF:0000107 		RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:3044914 (PMID:15155583)
GO_REF:0000033 		RGD
GO_Central		 PMID:15155583 GO_REF:0000033 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1856158|MGI:1857760|MGI:3042264 (PMID:15384171), (PMID:16835439), (PMID:8293872) 		GO_Central
Ensembl
RGD		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA 		MGI:1343101 (PMID:17320900)
GO_REF:0000107 		RGD
Ensembl		 PMID:17320900 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ttn titin involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857088|MGI:1857489 (PMID:12636920), (PMID:16291790), (PMID:8299937)
GO_REF:0000107 		RGD
Ensembl		 PMID:8299937 PMID:12636920 PMID:16291790 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO
IEA 		MGI:1927345 (PMID:17116431)
GO_REF:0000107 		RGD
Ensembl		 PMID:17116431 GO_REF:0000107 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2387501 (PMID:16157277), (PMID:16598713)
GO_REF:0000107 		RGD
Ensembl		 PMID:16157277 PMID:16598713 GO_REF:0000107 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
specification of animal organ identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179766 (PMID:20615956)
GO_REF:0000107 		RGD
Ensembl		 PMID:20615956 GO_REF:0000107 NCBI chr 3:66,758,805...66,769,626
Ensembl chr 3:46,351,213...46,361,041 		JBrowse link
specification of animal organ position term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:17071745)
GO_REF:0000107 		RGD
Ensembl		 PMID:17071745 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO
IEA 		MGI:96184|MGI:96207 (PMID:9520319)
GO_REF:0000107 		RGD
Ensembl		 PMID:9520319 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA 		(PMID:17071745)
GO_REF:0000107 		RGD
Ensembl		 PMID:17071745 GO_REF:0000107 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:15,211,878...15,215,317 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672 (PMID:16790475)
GO_REF:0000107 		RGD
Ensembl		 PMID:16790475 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO
IEA 		(PMID:11472837)
GO_REF:0000107 		RGD
Ensembl		 PMID:11472837 GO_REF:0000107 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:21761479) RGD PMID:21761479 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (PMID:11748151), (PMID:15215207), (PMID:16364285) RGD PMID:11748151 PMID:15215207 PMID:16364285 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728|MGI:99833 (PMID:15215207), (PMID:16364285)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 PMID:16364285 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153 (PMID:21761479) RGD PMID:21761479 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within ISO
IEA 		MGI:4441401 (PMID:21761479)
GO_REF:0000107 		RGD
Ensembl		 PMID:21761479 GO_REF:0000107 NCBI chr 2:123,600,972...123,685,331
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (PMID:14603322), (PMID:15755804), (PMID:16364285) RGD PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rfx4 regulatory factor X4 acts_upstream_of_or_within ISO MGI:3799278 (PMID:19887680) RGD PMID:19887680 NCBI chr 7:18,853,065...19,015,378
Ensembl chr 7:18,853,322...19,014,967 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA
IEA
ISO 		PMID:9230312
GO_REF:0000107
MGI:1857796 (PMID:11748151) 		Ensembl
RGD		 PMID:11748151 PMID:9230312 GO_REF:0000107, RGD:8553789 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:2176255 (PMID:19286674)
(PMID:21209331) 		Ensembl
RGD		 PMID:19286674 PMID:21209331 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3619046 (PMID:16459298)
GO_REF:0000107 		RGD
Ensembl		 PMID:16459298 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Reln reelin acts_upstream_of_or_within
involved_in 		IEP
ISO
ISS 		MGI:1856398 (PMID:16580148)
GO_REF:0000024 		RGD
UniProt		 PMID:16580148 PMID:14648677 GO_REF:0000024, RGD:2317803 NCBI chr 4:13,628,440...14,055,201
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:96785 (PMID:11719201)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:96785 (PMID:11719201), (PMID:16855091)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 PMID:16855091 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:18701439 GO_REF:0000107 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1890208|MGI:88177|MGI:88180 (PMID:11719201)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753|MGI:3665330 (PMID:26166575) RGD PMID:26166575 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155 (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:18701439 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IMP
IEA
ISO 		GO_REF:0000107
MGI:1857796 (PMID:11060228) 		Ensembl
RGD		 PMID:11060228 PMID:9811591 GO_REF:0000107, RGD:2306311 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18694563) RGD PMID:18694563 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:8395349) 		UniProt
RGD		 PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO
IEA 		MGI:1934917 (PMID:16316641)
GO_REF:0000107 		RGD
Ensembl		 PMID:16316641 GO_REF:0000107 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO
IEA 		MGI:2137037 (PMID:16319111)
GO_REF:0000107 		RGD
Ensembl		 PMID:16319111 GO_REF:0000107 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO
IEA 		MGI:2670663 (PMID:16319111)
GO_REF:0000107 		RGD
Ensembl		 PMID:16319111 GO_REF:0000107 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO
IEA 		(PMID:15337776)
GO_REF:0000107 		RGD
Ensembl		 PMID:15337776 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
ventral midline determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA
ISO 		GO_REF:0000107
(PMID:11517919) 		Ensembl
RGD		 PMID:11517919 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16020526) 		UniProt
Ensembl
RGD		 PMID:16020526 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA 		UniProtKB:Q8K3Q3 (PMID:17728344)
GO_REF:0000107 		RGD
Ensembl		 PMID:17728344 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA 		(PMID:16020526), (PMID:17728344)
GO_REF:0000107 		RGD
Ensembl		 PMID:16020526 PMID:17728344 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1932100 (PMID:10217145)
GO_REF:0000107 		RGD
Ensembl		 PMID:10217145 GO_REF:0000107 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2182329 (PMID:11239429)
GO_REF:0000107 		RGD
Ensembl		 PMID:11239429 GO_REF:0000107 NCBI chr 1:99,348,638...99,354,173
Ensembl chr 1:99,349,608...99,354,038 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:4420993 (PMID:22932389)
GO_REF:0000107 		RGD
Ensembl		 PMID:22932389 GO_REF:0000107 NCBI chr 1:223,244,340...223,264,254
Ensembl chr 1:223,248,747...223,262,530 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO MGI:2182858 (PMID:11239430) RGD PMID:11239430 NCBI chr 4:81,416,590...81,420,967
Ensembl chr 4:81,416,590...81,420,967 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO
IEA 		(PMID:19666821)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666821 GO_REF:0000107 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155 (PMID:9230312) RGD PMID:9230312 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO
IEA 		(PMID:19386662)
GO_REF:0000107 		RGD
Ensembl		 PMID:19386662 GO_REF:0000107 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19386662) 		Ensembl
RGD		 PMID:19386662 GO_REF:0000107 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO
IEA 		(PMID:19386662)
GO_REF:0000107 		RGD
Ensembl		 PMID:19386662 GO_REF:0000107 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
vertebrate eye-specific patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qa complement C1q A chain involved_in ISO (PMID:18083105) RGD PMID:18083105 NCBI chr 5:154,417,086...154,419,933
Ensembl chr 5:149,133,636...149,136,534 		JBrowse link
G C3 complement C3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18083105) 		Ensembl
RGD		 PMID:18083105 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:22632727) RGD PMID:22632727 NCBI chr 1:192,089,496...192,139,947
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982 (PMID:15469977) RGD PMID:15469977 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1329040 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1329040|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:2181754|MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr 8:73,345,457...73,414,985
Ensembl chr 8:64,450,114...64,519,763 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    multicellular organismal process 9031
      pattern specification process 502
        regionalization 455
          R8 cell-mediated photoreceptor organization 0
          adaxial/abaxial pattern specification + 2
          anterior/posterior pattern specification + 233
          bud field specification 0
          centrolateral pattern formation + 0
          cerebral cortex regionalization 9
          chorion-containing eggshell pattern formation 0
          cuticle pattern formation + 0
          dorsal/ventral pattern formation + 110
          forebrain regionalization + 27
          formation of animal organ boundary + 1
          ground tissue pattern formation 0
          imaginal disc pattern formation + 0
          imaginal disc-derived wing vein specification + 0
          left/right pattern formation + 143
          limb epidermis stratification + 0
          midbrain-hindbrain boundary initiation 1
          neural plate regionalization + 7
          neural tube patterning + 52
          periodic partitioning + 0
          petal epidermis patterning 0
          proximal/distal pattern formation + 36
          radial pattern formation + 1
          regionalization involved in semicircular canal formation 0
          renal capsule specification + 1
          segmentation + 115
          specification of animal organ identity + 42
          specification of animal organ position 3
          specification of ovule identity 0
          specification of plant organ identity + 0
          specification of plant organ number + 0
          specification of plant organ position 0
          spinal cord patterning + 25
          stomatal complex patterning + 0
          telencephalon regionalization + 16
          trichome patterning + 0
          tripartite regional subdivision + 20
          ventral midline determination 1
          vertebrate eye-specific patterning 3
          wing and notum subfield formation + 0
          xylem and phloem pattern formation + 0
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          pattern specification process 502
            regionalization 455
              R8 cell-mediated photoreceptor organization 0
              adaxial/abaxial pattern specification + 2
              anterior/posterior pattern specification + 233
              bud field specification 0
              centrolateral pattern formation + 0
              cerebral cortex regionalization 9
              chorion-containing eggshell pattern formation 0
              cuticle pattern formation + 0
              dorsal/ventral pattern formation + 110
              forebrain regionalization + 27
              formation of animal organ boundary + 1
              ground tissue pattern formation 0
              imaginal disc pattern formation + 0
              imaginal disc-derived wing vein specification + 0
              left/right pattern formation + 143
              limb epidermis stratification + 0
              midbrain-hindbrain boundary initiation 1
              neural plate regionalization + 7
              neural tube patterning + 52
              periodic partitioning + 0
              petal epidermis patterning 0
              proximal/distal pattern formation + 36
              radial pattern formation + 1
              regionalization involved in semicircular canal formation 0
              renal capsule specification + 1
              segmentation + 115
              specification of animal organ identity + 42
              specification of animal organ position 3
              specification of ovule identity 0
              specification of plant organ identity + 0
              specification of plant organ number + 0
              specification of plant organ position 0
              spinal cord patterning + 25
              stomatal complex patterning + 0
              telencephalon regionalization + 16
              trichome patterning + 0
              tripartite regional subdivision + 20
              ventral midline determination 1
              vertebrate eye-specific patterning 3
              wing and notum subfield formation + 0
              xylem and phloem pattern formation + 0
paths to the root