Sox1 (SRY-box transcription factor 1) - Rat Genome Database

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Gene: Sox1 (SRY-box transcription factor 1) Rattus norvegicus
Analyze
Symbol: Sox1
Name: SRY-box transcription factor 1
RGD ID: 6487636
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); forebrain development (ortholog); forebrain neuron development (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH 1,2-dimethylhydrazine (ortholog); 17beta-estradiol (ortholog); 2,2',4,4'-Tetrabromodiphenyl ether (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100912302; SRY (sex determining region Y)-box 1; SRY box 1; transcription factor SOX-1; transcription factor SOX-1-like
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,134,795 - 77,139,628 (-)NCBImRatBN7.2
Cytogenetic MapUn NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8625802   PMID:9512512   PMID:15882093   PMID:20049565   PMID:20439489   PMID:20844123   PMID:26996170  


Genomics

Comparative Map Data
Sox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,134,795 - 77,139,628 (-)NCBImRatBN7.2
Cytogenetic MapUn NCBI
SOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl13112,067,149 - 112,071,706 (+)EnsemblGRCh38hg38GRCh38
GRCh3813112,067,149 - 112,071,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713112,721,463 - 112,726,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613111,769,914 - 111,774,021 (+)NCBINCBI36hg18NCBI36
Build 3413111,769,913 - 111,774,021NCBI
Celera1393,573,584 - 93,577,691 (+)NCBI
Cytogenetic Map13q34NCBI
HuRef1393,184,423 - 93,187,956 (+)NCBIHuRef
CHM1_113112,691,052 - 112,695,159 (+)NCBICHM1_1
Sox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,445,519 - 12,449,555 (+)NCBIGRCm39mm39
GRCm39 Ensembl812,445,295 - 12,450,126 (+)Ensembl
GRCm38812,395,519 - 12,399,555 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,395,295 - 12,400,126 (+)EnsemblGRCm38mm10GRCm38
MGSCv37812,395,519 - 12,399,555 (+)NCBIGRCm37mm9NCBIm37
MGSCv36812,396,333 - 12,397,508 (+)NCBImm8
Celera812,563,221 - 12,567,238 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
SOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113112,342,938 - 112,355,435 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01393,023,958 - 93,269,467 (+)NCBIMhudiblu_PPA_v0panPan3
SOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,902,113 - 59,903,820 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,615,001 - 59,616,594 (+)NCBI
ROS_Cfam_1.02260,529,023 - 60,530,613 (+)NCBI
UMICH_Zoey_3.12260,028,899 - 60,030,489 (+)NCBI
UNSW_CanFamBas_1.02260,023,917 - 60,025,499 (+)NCBI
UU_Cfam_GSD_1.02260,058,146 - 60,059,739 (+)NCBI
SOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11177,985,771 - 77,989,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,201,867 - 90,204,416 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604647,085,294 - 47,088,639 (+)NCBIVero_WHO_p1.0
Sox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247931,341,643 - 1,648,168 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
Sox1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0X144,062,046 - 144,062,209NCBIRnor5.0
RGSC_v3.4X146,511,248 - 146,511,449UniSTSRGSC3.4
CeleraX135,370,769 - 135,370,970UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003752252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003752252   ⟹   XP_003752300
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,134,795 - 77,139,628 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003752300 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003752300   ⟸   XM_003752252
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100912302 ENTREZGENE
PhenoGen Sox1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Sox1  SRY-box transcription factor 1  Sox1  SRY box 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-13 Sox1  SRY box 1  Sox1  SRY (sex determining region Y)-box 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-06-25 Sox1  SRY (sex determining region Y)-box 1  LOC100912302  transcription factor SOX-1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912302  transcription factor SOX-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL