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Gene: Barx1 (BARX homeobox 1) Rattus norvegicus
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Symbol: Barx1
Name: BARX homeobox 1
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including digestive system development; negative regulation of Wnt signaling pathway; and spleen development. Predicted to localize to the nucleus. Orthologous to human BARX1 (BARX homeobox 1); INTERACTS WITH bisphenol A; cadmium dichloride; decabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BarH-like homeobox 1; homeobox protein BarH-like 1; LOC364680
Orthologs:
Homo sapiens (human) : BARX1 (BARX homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Barx1 (BarH-like homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Barx1 (BARX homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : BARX1 (BARX homeobox 1)
Canis lupus familiaris (dog) : BARX1 (BARX homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Barx1 (BARX homeobox 1)
Sus scrofa (pig) : BARX1 (BARX homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01714,824,721 - 14,828,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,824,734 - 14,828,329 (-)Ensembl
Rnor_5.01716,875,794 - 16,879,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,993,765 - 21,997,240 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11721,993,839 - 21,997,209 (-)NCBI
Celera1715,717,041 - 15,720,516 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Barx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310884
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.