Reln (reelin) - Rat Genome Database

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Gene: Reln (reelin) Rattus norvegicus
Analyze
Symbol: Reln
Name: reelin
RGD ID: 3553
Description: Predicted to enable very-low-density lipoprotein particle receptor binding activity. Involved in several processes, including nervous system development; response to lithium ion; and response to steroid hormone. Located in several cellular components, including axon; dendrite; and perikaryon. Biomarker of hypothyroidism and status epilepticus. Human ortholog(s) of this gene implicated in Norman-Roberts syndrome; autistic disorder; familial temporal lobe epilepsy 7; and schizophrenia. Orthologous to human RELN (reelin); PARTICIPATES IN Reelin signaling pathway; altered Reelin signaling pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH (R)-lipoic acid; (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Reelen; reeler; Rl
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Is Marker For: Strains:   KZC/Tky  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2412,736,177 - 13,162,956 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl412,736,130 - 13,162,211 (+)Ensembl
Rnor_6.049,347,533 - 9,774,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,347,528 - 9,773,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,349,408 - 9,775,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,150,873 - 8,609,141 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.148,150,872 - 8,609,141 (+)NCBI
Celera48,330,632 - 8,754,202 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (EXP)
(S)-nicotine  (EXP)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetic acid  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
androgen antagonist  (EXP)
antimycin A  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bezafibrate  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Butylparaben  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chaetocin  (EXP)
chlordecone  (ISO)
chlorpyrifos  (EXP)
cisplatin  (EXP)
clozapine  (EXP,ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (EXP)
decabromodiphenyl ether  (ISO)
Deguelin  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzacamene  (EXP)
epoxiconazole  (EXP)
ethanol  (ISO)
fluoxetine  (EXP)
flutamide  (EXP)
genistein  (ISO)
glutathione  (EXP)
glyphosate  (EXP)
graphite  (EXP)
haloperidol  (EXP)
Indeno[1,2,3-cd]pyrene  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (EXP,ISO)
linuron  (EXP)
lipoic acid  (EXP)
lithium atom  (EXP)
lithium hydride  (EXP)
LY294002  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
morphine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodimethylamine  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nicotine  (EXP)
nimesulide  (EXP)
olanzapine  (EXP)
oxaliplatin  (EXP)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
PD 0325901  (ISO)
phencyclidine  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
propiconazole  (ISO)
pyrimidifen  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulpiride  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
Tetrachlorobisphenol A  (ISO)
tetrachloromethane  (ISO)
thifluzamide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vigabatrin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
associative learning  (IEA,ISO)
axon guidance  (IEA,ISO,ISS)
brain development  (IMP,ISO,ISS)
cell adhesion  (IEA)
cell migration  (ISO)
cell morphogenesis involved in differentiation  (ISO,ISS)
cellular response to dexamethasone stimulus  (IEP)
central nervous system development  (IBA,IEA,ISO,ISS)
cerebral cortex development  (IEP,ISO)
cerebral cortex tangential migration  (IEA,ISO,ISS)
dendrite development  (IEA,ISO)
dentate gyrus development  (IMP)
forebrain development  (ISO)
glial cell differentiation  (IEA,ISO,ISS)
hippocampus development  (IEA,ISO)
hypothalamus development  (IEP)
lateral motor column neuron migration  (IEA,ISO)
layer formation in cerebral cortex  (IEA,ISO)
learning  (ISO)
locomotory behavior  (IEA,IMP,ISO)
long-term memory  (IEA,ISO)
long-term synaptic potentiation  (IEA,ISO)
memory  (IEP)
midgut development  (IEP)
modulation of chemical synaptic transmission  (ISO)
neuron migration  (IBA,IEA,IMP,ISO,ISS)
NMDA glutamate receptor clustering  (IEA,ISO)
orbitofrontal cortex development  (IEP)
peptidyl-tyrosine phosphorylation  (IEA,ISO,ISS)
positive regulation of AMPA receptor activity  (IEA,ISO)
positive regulation of CREB transcription factor activity  (IEA,ISO)
positive regulation of dendritic spine morphogenesis  (IEA,ISO)
positive regulation of excitatory postsynaptic potential  (IEA,ISO)
positive regulation of lateral motor column neuron migration  (IEA,ISO)
positive regulation of long-term synaptic potentiation  (IEA,ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of phosphatidylinositol 3-kinase signaling  (IEA,ISO)
positive regulation of protein kinase activity  (ISO,ISS)
positive regulation of protein tyrosine kinase activity  (IEA,ISO)
positive regulation of small GTPase mediated signal transduction  (IEA,ISO,ISS)
positive regulation of synapse maturation  (IEA,ISO)
positive regulation of synaptic transmission, glutamatergic  (IEA,ISO)
positive regulation of TOR signaling  (IEA,ISO)
postsynaptic density protein 95 clustering  (IEA,ISO)
protein localization to synapse  (IEA,ISO)
proteolysis  (IEA)
receptor localization to synapse  (IEA,ISO)
reelin-mediated signaling pathway  (IEA,ISO)
regulation of behavior  (IEA,ISO)
regulation of gene expression  (ISO)
regulation of NMDA receptor activity  (IEA,ISO)
response to amino acid  (IEP)
response to axon injury  (IEP)
response to corticosterone  (IEP)
response to electrical stimulus  (IEP)
response to ethanol  (IEP)
response to fatty acid  (IEP)
response to hormone  (IEP)
response to insecticide  (IEP)
response to lithium ion  (IEP)
response to mechanical stimulus  (IEP)
response to organic cyclic compound  (IEP)
response to pain  (IEA,ISO,ISS)
response to progesterone  (IEP)
response to toxic substance  (IEP)
response to xenobiotic stimulus  (IEP)
social behavior  (IEP)
spinal cord patterning  (IEA,IEP,ISO,ISS)
thyroid hormone metabolic process  (ISO)
ventral spinal cord development  (IEA,ISO)

Cellular Component
axon  (IDA)
cytoplasm  (IDA,IEA,ISO,ISS)
dendrite  (IDA,IEA,ISO,ISS)
extracellular matrix  (IEA,ISO)
extracellular region  (IEA)
extracellular space  (IBA,IDA,IEA,ISO,ISS)
neuron projection  (IBA,IDA)
neuronal cell body  (IDA)
perikaryon  (IDA)
plasma membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. Alvarez-Dolado M, etal., J Neurosci 1999 Aug 15;19(16):6979-93.
2. Bartlett CW, etal., Int J Dev Neurosci 2005 Apr-May;23(2-3):221-34.
3. Beffert U, etal., J Biol Chem 2002 Dec 20;277(51):49958-64.
4. Betancourt AM, etal., Toxicol Sci. 2006 Aug;92(2):500-6. Epub 2006 May 4.
5. Bock HH, etal., J Biol Chem 2003 Oct 3;278(40):38772-9. Epub 2003 Jul 25.
6. Botella-Lopez A, etal., Int J Biochem Cell Biol. 2008;40(4):766-75.
7. Botella-López A, etal., Neurobiol Dis. 2010 Mar;37(3):682-91. doi: 10.1016/j.nbd.2009.12.006. Epub 2009 Dec 16.
8. Cassidy AW, etal., Neuroscience. 2010 Mar 17;166(2):377-85. Epub 2009 Dec 24.
9. D'Arcangelo G, etal., Nature. 1995 Apr 20;374(6524):719-23.
10. Devlin B, etal., Am J Med Genet B Neuropsychiatr Genet. 2004 Apr 1;126B(1):46-50.
11. Fatemi SH, etal., Biol Psychiatry. 2005 Apr 1;57(7):777-87.
12. Fatemi SH, etal., Mol Psychiatry. 2000 Nov;5(6):654-63, 571.
13. Fatemi SH, etal., Schizophr Res. 2009 Jun;111(1-3):138-52. Epub 2009 Apr 9.
14. Fournier NM, etal., Hippocampus. 2009 Jun 4.
15. Garcia-Miranda P, etal., Exp Physiol. 2010 Apr;95(4):498-507. Epub 2009 Nov 27.
16. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
17. GOA data from the GO Consortium
18. Gong C, etal., J Neurosci. 2007 Feb 21;27(8):1803-11.
19. Grayson DR, etal., Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9341-6. Epub 2005 Jun 16.
20. Ha S, etal., J Neurosci. 2017 Jan 25;37(4):960-971. doi: 10.1523/JNEUROSCI.1826-16.2016.
21. Haas CA, etal., J Neurosci. 2002 Jul 15;22(14):5797-802.
22. Hartfuss E, etal., Development 2003 Oct;130(19):4597-609.
23. Hoareau C, etal., Brain Res. 2006 Jun 30;1097(1):43-51. Epub 2006 May 30.
24. Hoe HS, etal., J Neurosci. 2009 Jun 10;29(23):7459-73.
25. Hong SE, etal., Nat Genet 2000 Sep;26(1):93-6.
26. Impagnatiello F, etal., Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15718-23.
27. Ishibashi K, etal., Lab Anim Sci 1989 Mar;39(2):132-6.
28. Kelemenova S, etal., Psychiatr Genet. 2010 Aug;20(4):137-9. doi: 10.1097/YPG.0b013e32833a1eb3.
29. Kikkawa S, etal., J Comp Neurol 2003 Aug 25;463(3):303-15.
30. Kobold D, etal., J Hepatol. 2002 May;36(5):607-13.
31. Kobow K, etal., J Neuropathol Exp Neurol. 2009 Apr;68(4):356-64. doi: 10.1097/NEN.0b013e31819ba737.
32. Kubasak MD, etal., J Comp Neurol. 2004 Jan 6;468(2):165-78.
33. Lussier AL, etal., Neurosci Lett. 2009 Aug 28;460(2):170-4. Epub 2009 May 27.
34. Martinez-Cerdeno V and Clasca F, Brain Res Bull. 2002 Feb-Mar 1;57(3-4):485-8.
35. MGD data from the GO Consortium
36. Miller CA and Sweatt JD, Neuron. 2007 Mar 15;53(6):857-69.
37. Misaki K, etal., Brain Res Dev Brain Res. 2004 Jan 31;148(1):89-96.
38. Mooney SM, etal., Cereb Cortex. 2004 Oct;14(10):1071-80. Epub 2004 May 27.
39. NCBI rat LocusLink and RefSeq merged data July 26, 2002
40. Nishikawa S, etal., J Comp Neurol 2003 Jun 23;461(2):166-73.
41. OMIM Disease Annotation Pipeline
42. Persico AM, etal., Mol Psychiatry. 2001 Mar;6(2):150-9.
43. Pesold C, etal., Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):3217-22.
44. Pipeline to import KEGG annotations from KEGG into RGD
45. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
46. Quattrocchi CC, etal., Science 2003 Aug 1;301(5633):649-53.
47. Ramos-Moreno T, etal., Eur J Neurosci. 2006 Jan;23(2):401-22.
48. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
49. RGD automated import pipeline for gene-chemical interactions
50. RGD comprehensive gene curation
51. Roglio I, etal., Neuroscience. 2008 Aug 26;155(3):673-85. Epub 2008 Jun 19.
52. Saez-Valero J, etal., J Neurosci Res 2003 Apr 1;72(1):132-6.
53. Smit-Rigter LA, etal., PLoS One. 2009;4(4):e5167. Epub 2009 Apr 9.
54. Sui L, etal., Brain Res. 2010 Feb 8;1313:9-24. Epub 2009 Dec 16.
55. Weaver IC, etal., Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3480-5. Epub 2006 Feb 16.
56. Won SJ, etal., Exp Neurol. 2006 Mar;198(1):250-9. Epub 2006 Jan 24.
57. Yavin E, etal., Neuroscience. 2009 Sep 15;162(4):1011-22. Epub 2009 May 14.
58. Yokoi N, etal., Brain Res Mol Brain Res 2003 Apr 10;112(1-2):1-7.
59. Zhao S, etal., Development. 2004 Oct;131(20):5117-25.
Additional References at PubMed
PMID:10328932   PMID:10571240   PMID:11226314   PMID:11900467   PMID:12223565   PMID:12526740   PMID:14715136   PMID:14980731   PMID:15062102   PMID:15255972   PMID:15525772   PMID:15677725  
PMID:15703280   PMID:16207762   PMID:16324103   PMID:16580148   PMID:16901480   PMID:17229826   PMID:17694053   PMID:18778775   PMID:19409883   PMID:20347957   PMID:20357114   PMID:20368265  
PMID:20421250   PMID:20438765   PMID:20538740   PMID:20600205   PMID:20711475   PMID:20847152   PMID:21148112   PMID:21491433   PMID:21492744   PMID:21664258   PMID:21784155   PMID:21814183  
PMID:21852430   PMID:21858819   PMID:22469747   PMID:22595232   PMID:22665518   PMID:22871113   PMID:22990595   PMID:23385810   PMID:23478644   PMID:23493620   PMID:23608736   PMID:23803971  
PMID:24134921   PMID:24210904   PMID:24539699   PMID:25679528   PMID:25790952   PMID:25887698   PMID:27168410   PMID:27653801   PMID:28385118   PMID:28602919   PMID:29880879   PMID:30169690  
PMID:30433855   PMID:32115961  


Genomics

Comparative Map Data
Reln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2412,736,177 - 13,162,956 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl412,736,130 - 13,162,211 (+)Ensembl
Rnor_6.049,347,533 - 9,774,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,347,528 - 9,773,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,349,408 - 9,775,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,150,873 - 8,609,141 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.148,150,872 - 8,609,141 (+)NCBI
Celera48,330,632 - 8,754,202 (+)NCBICelera
Cytogenetic Map4q11NCBI
RELN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7103,471,381 - 103,989,658 (-)EnsemblGRCh38hg38GRCh38
GRCh387103,471,789 - 103,989,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377103,112,236 - 103,630,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,899,473 - 103,417,198 (-)NCBINCBI36hg18NCBI36
Build 347102,706,187 - 103,223,913NCBI
Celera797,918,553 - 98,435,889 (-)NCBI
Cytogenetic Map7q22.1NCBI
HuRef797,472,665 - 97,989,692 (-)NCBIHuRef
CHM1_17103,045,544 - 103,563,285 (-)NCBICHM1_1
CRA_TCAGchr7v27102,473,053 - 102,990,385 (-)NCBI
Reln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39522,089,452 - 22,549,703 (-)NCBIGRCm39mm39
GRCm39 Ensembl522,089,452 - 22,549,700 (-)Ensembl
GRCm38521,884,454 - 22,344,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,884,454 - 22,344,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv37521,390,272 - 21,850,523 (-)NCBIGRCm37mm9NCBIm37
MGSCv36521,396,293 - 21,856,514 (-)NCBImm8
Celera518,857,999 - 19,307,447 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.98NCBI
Reln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,424,394 - 8,863,969 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554108,424,439 - 8,863,966 (-)NCBIChiLan1.0ChiLan1.0
RELN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17108,208,344 - 108,728,037 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,208,344 - 108,728,037 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0795,464,285 - 95,984,813 (-)NCBIMhudiblu_PPA_v0panPan3
RELN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,275,822 - 16,773,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,275,837 - 16,773,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1815,920,416 - 16,416,804 (+)NCBI
ROS_Cfam_1.01816,579,791 - 17,064,382 (+)NCBI
UMICH_Zoey_3.11816,349,469 - 16,829,572 (+)NCBI
UNSW_CanFamBas_1.01816,282,254 - 16,767,463 (+)NCBI
UU_Cfam_GSD_1.01816,555,196 - 17,036,210 (+)NCBI
Reln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511858,504,719 - 58,964,509 (+)NCBI
SpeTri2.0NW_00493647919,628,488 - 20,088,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,460,857 - 103,963,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,460,855 - 103,963,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29114,069,880 - 114,180,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RELN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,440,988 - 72,951,173 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2172,440,160 - 72,950,747 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604231,044,210 - 31,561,114 (+)NCBIVero_WHO_p1.0
Reln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473925,472,626 - 25,918,064 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D4Rat136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,045,402 - 13,045,633 (+)MAPPERmRatBN7.2
Rnor_6.049,657,095 - 9,657,325NCBIRnor6.0
Rnor_5.049,658,484 - 9,658,714UniSTSRnor5.0
RGSC_v3.448,490,768 - 8,490,998UniSTSRGSC3.4
RGSC_v3.448,490,767 - 8,490,998RGDRGSC3.4
RGSC_v3.148,490,768 - 8,490,998RGD
Celera48,637,529 - 8,637,759UniSTS
RH 3.4 Map439.9RGD
RH 3.4 Map439.9UniSTS
RH 2.0 Map465.7RGD
SHRSP x BN Map40.0RGD
Cytogenetic Map4q11.2UniSTS
U24703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,162,841 - 13,162,927 (+)MAPPERmRatBN7.2
Rnor_6.049,774,143 - 9,774,228NCBIRnor6.0
Rnor_5.049,775,780 - 9,775,865UniSTSRnor5.0
RGSC_v3.448,609,169 - 8,609,254UniSTSRGSC3.4
Celera48,754,230 - 8,754,315UniSTS
Cytogenetic Map4q11.2UniSTS
RH129604  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,162,714 - 13,162,894 (+)MAPPERmRatBN7.2
Rnor_6.049,774,016 - 9,774,195NCBIRnor6.0
Rnor_5.049,775,653 - 9,775,832UniSTSRnor5.0
RGSC_v3.448,609,042 - 8,609,221UniSTSRGSC3.4
Celera48,754,103 - 8,754,282UniSTS
Cytogenetic Map4q11.2UniSTS
BE108114  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,055,115 - 13,055,266 (+)MAPPERmRatBN7.2
Rnor_6.049,666,429 - 9,666,579NCBIRnor6.0
Rnor_5.049,667,818 - 9,667,968UniSTSRnor5.0
RGSC_v3.448,501,582 - 8,501,732UniSTSRGSC3.4
Celera48,646,654 - 8,646,804UniSTS
RH 3.4 Map441.7UniSTS
Cytogenetic Map4q11.2UniSTS
RH138906  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,068,522 - 13,068,659 (+)MAPPERmRatBN7.2
Rnor_6.049,679,836 - 9,679,972NCBIRnor6.0
Rnor_5.049,681,225 - 9,681,361UniSTSRnor5.0
RGSC_v3.448,514,989 - 8,515,125UniSTSRGSC3.4
Celera48,660,061 - 8,660,197UniSTS
RH 3.4 Map439.9UniSTS
Cytogenetic Map4q11.2UniSTS
RH140445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,162,625 - 13,162,852 (+)MAPPERmRatBN7.2
Rnor_6.049,773,927 - 9,774,153NCBIRnor6.0
Rnor_5.049,775,564 - 9,775,790UniSTSRnor5.0
RGSC_v3.448,608,953 - 8,609,179UniSTSRGSC3.4
Celera48,754,014 - 8,754,240UniSTS
RH 3.4 Map441.4UniSTS
Cytogenetic Map4q11.2UniSTS
BF391264  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2412,823,106 - 12,823,329 (+)MAPPERmRatBN7.2
Rnor_6.049,435,815 - 9,436,037NCBIRnor6.0
Rnor_5.049,436,037 - 9,436,259UniSTSRnor5.0
RGSC_v3.448,257,094 - 8,257,316UniSTSRGSC3.4
Celera48,415,973 - 8,416,195UniSTS
RH 3.4 Map441.4UniSTS
Cytogenetic Map4q11.2UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat


Related Rat Strains
The following Strains have been annotated to Reln

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:426
Count of miRNA genes:220
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000010521, ENSRNOT00000061858
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 41 32 1 32 68 2 4
Low 3 39 16 9 18 9 8 8 6 29 34 11 8
Below cutoff 2 3 4 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010521   ⟹   ENSRNOP00000010521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl412,736,130 - 13,162,211 (+)Ensembl
Rnor_6.0 Ensembl49,347,528 - 9,773,670 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000061858   ⟹   ENSRNOP00000058574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl412,736,130 - 13,162,211 (+)Ensembl
Rnor_6.0 Ensembl49,347,779 - 9,773,217 (+)Ensembl
RefSeq Acc Id: NM_080394   ⟹   NP_536319
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,299 - 13,162,814 (+)NCBI
Rnor_6.049,347,607 - 9,774,115 (+)NCBI
Rnor_5.049,349,408 - 9,775,894 (+)NCBI
RGSC_v3.448,150,873 - 8,609,141 (+)RGD
Celera48,330,632 - 8,754,202 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235873   ⟹   XP_006235935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,177 - 13,162,956 (+)NCBI
Rnor_6.049,347,533 - 9,774,257 (+)NCBI
Rnor_5.049,349,408 - 9,775,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592472   ⟹   XP_017447961
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,177 - 13,156,720 (+)NCBI
Rnor_6.049,347,533 - 9,768,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107060   ⟹   XP_038962988
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,177 - 13,156,893 (+)NCBI
RefSeq Acc Id: XM_039107061   ⟹   XP_038962989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,177 - 13,156,893 (+)NCBI
RefSeq Acc Id: XM_039107062   ⟹   XP_038962990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2412,736,177 - 13,156,893 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_536319   ⟸   NM_080394
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_006235935   ⟸   XM_006235873
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017447961   ⟸   XM_017592472
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000010521   ⟸   ENSRNOT00000010521
RefSeq Acc Id: ENSRNOP00000058574   ⟸   ENSRNOT00000061858
RefSeq Acc Id: XP_038962988   ⟸   XM_039107060
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962990   ⟸   XM_039107062
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962989   ⟸   XM_039107061
- Peptide Label: isoform X2
Protein Domains
EGF-like   Reelin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692804
Promoter ID:EPDNEW_R3328
Type:single initiation site
Name:Reln_1
Description:reelin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.049,347,781 - 9,347,841EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3553 AgrOrtholog
Ensembl Genes ENSRNOG00000021441 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010521 UniProtKB/TrEMBL
  ENSRNOP00000058574 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010521 UniProtKB/TrEMBL
  ENSRNOT00000061858 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.4060 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Reeler_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Reeler_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Reelin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialidase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24718 UniProtKB/Swiss-Prot
NCBI Gene 24718 ENTREZGENE
PANTHER PTHR11841 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Reeler UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Reln PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REELIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50939 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F1LM29_RAT UniProtKB/TrEMBL
  F1LZI7_RAT UniProtKB/TrEMBL
  P58751 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q80T65 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2001-05-08 Reln  Reelin      Name changed to reflect Human and Mouse nomenclature 62408 APPROVED
2001-05-08 Reln  Reeler      Name withdrawn, does not match Human and Mouse nomenclature 62408 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_disease mutation causes the autosomal recessive mutant creeping (cre) in the Komeda Zucker creeping (KZC) rat strain 727518
gene_disease mutation causes the autosomal recessive reeler-like abnormal locomoter phenotype in the shaking rat Kawasaki (SRK) 729917