Tbc1d32 (TBC1 domain family, member 32)

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Gene: Tbc1d32 (TBC1 domain family, member 32) Rattus norvegicus

Analyze

Symbol:

Tbc1d32

Name:

TBC1 domain family, member 32

RGD ID:

2323599

Description:

Predicted to be involved in non-motile cilium assembly. Predicted to act upstream of or within several processes, including camera-type eye development; embryonic digit morphogenesis; and regionalization. Orthologous to human TBC1D32 (TBC1 domain family member 32); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; paracetamol.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hypothetical protein LOC100359595; LOC100359595

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D32 (TBC1 domain family member 32)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tbc1d32 (TBC1 domain family, member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d32 (TBC1 domain family member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FGFR4 (fibroblast growth factor receptor 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TBC1D32 (TBC1 domain family member 32)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tbc1d32 (TBC1 domain family, member 32)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d32 (TBC1 domain family, member 32)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d32	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	35,359,865 - 35,590,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	35,359,863 - 35,590,415 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	37,463,879 - 37,701,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	37,465,278 - 37,700,937 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	39,210,499 - 39,266,165 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	20	39,304,856 - 39,445,737 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	34,787,599 - 35,021,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	36,713,193 - 36,937,081 (-)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISS)

epilepsy (ISO)

genetic disease (ISO)

hypopituitarism (ISO)

Meckel syndrome (ISS)

microcephaly (ISO)

Oculodentodigital Dysplasia, Autosomal Recessive (ISO)

VACTERL association (ISS)

visceral heterotaxy (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

butan-1-ol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

epoxiconazole (ISO)

formaldehyde (ISO)

herbicide (ISO)

inulin (ISO)

isobutanol (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

picloram (ISO)

potassium chromate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye development (ISO)

cilium assembly (ISO)

determination of left/right symmetry (ISO)

embryonic digit morphogenesis (ISO)

heart development (ISO)

kidney development (ISO)

lens development in camera-type eye (ISO)

neural tube development (ISO)

neural tube patterning (ISO)

non-motile cilium assembly (IBA,ISO)

protein localization to cilium (ISO)

retina development in camera-type eye (ISO)

retinal pigment epithelium development (ISO)

roof of mouth development (ISO)

smoothened signaling pathway (ISO)

smoothened signaling pathway involved in dorsal/ventral neural tube patterning (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20159594	PMID:25807483	PMID:29487109

Genomics

Comparative Map Data

Tbc1d32
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	35,359,865 - 35,590,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	35,359,863 - 35,590,415 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	37,463,879 - 37,701,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	37,465,278 - 37,700,937 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	39,210,499 - 39,266,165 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	20	39,304,856 - 39,445,737 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	34,787,599 - 35,021,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	36,713,193 - 36,937,081 (-)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

TBC1D32
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	121,079,494 - 121,334,729 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	121,079,494 - 121,334,745 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	121,400,640 - 121,655,875 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	121,442,326 - 121,697,343 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	121,443,081 - 121,697,325	NCBI
Celera	6	122,145,028 - 122,400,056 (-)	NCBI		Celera
Cytogenetic Map	6	q22.31	NCBI
HuRef	6	118,983,069 - 119,237,913 (-)	NCBI		HuRef
CHM1_1	6	121,664,603 - 121,919,458 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	122,266,619 - 122,522,031 (-)	NCBI		T2T-CHM13v2.0

Tbc1d32
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	55,890,389 - 56,106,495 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	55,890,389 - 56,104,785 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	56,014,293 - 56,228,968 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	56,014,293 - 56,228,689 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	55,734,099 - 55,948,495 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	55,736,584 - 55,850,606 (-)	NCBI		MGSCv36	mm8
Celera	10	56,831,869 - 57,046,448 (-)	NCBI		Celera
Cytogenetic Map	10	B3	NCBI
cM Map	10	28.45	NCBI

Tbc1d32
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	3,386,180 - 3,540,933 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	3,385,216 - 3,542,497 (-)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D32
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	138,986,204 - 139,241,285 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	118,884,928 - 119,139,138 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	123,021,640 - 123,274,114 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	123,022,008 - 123,273,810 (-)	Ensembl	panpan1.1		panPan2

TBC1D32
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	60,662,704 - 60,873,881 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	60,667,721 - 60,873,614 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	61,470,592 - 61,682,050 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	60,861,191 - 61,072,929 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	60,866,189 - 61,072,648 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	60,773,317 - 60,984,599 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	60,588,208 - 60,799,946 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	61,235,512 - 61,446,983 (-)	NCBI		UU_Cfam_GSD_1.0

Tbc1d32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	111,525,372 - 111,706,301 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936658	3,632,536 - 3,812,805 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936658	3,632,314 - 3,814,134 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D32
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	41,057,838 - 41,265,375 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	41,057,782 - 41,265,416 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	45,614,754 - 45,822,509 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D32
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	52,518,428 - 52,742,961 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	24,796,884 - 25,022,884 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d32
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	9,444,919 - 9,609,134 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624798	9,444,536 - 9,609,957 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tbc1d32
1342 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	24
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000001051
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	17617832	47606836	Rat
2317880	Alcrsp25	Alcohol response QTL 25	2.3		response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	17697550	54435887	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	19190721	54435887	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	25106722	54435887	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	25106722	54435887	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	25106722	54435887	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	25209734	54435887	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	29244388	54435887	Rat
70158	Bp60	Blood pressure QTL 60	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	31614284	44396023	Rat

Markers in Region

D10Mit257.1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	35,510,066 - 35,510,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	37,622,629 - 37,622,864	NCBI	Rnor6.0
Rnor_5.0	20	39,367,091 - 39,367,326	UniSTS	Rnor5.0
RGSC_v3.4	20	34,940,814 - 34,941,049	UniSTS	RGSC3.4
Celera	20	36,861,200 - 36,861,435	UniSTS

RH131392

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	35,476,700 - 35,476,911 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	37,589,223 - 37,589,433	NCBI	Rnor6.0
Rnor_5.0	20	39,333,685 - 39,333,895	UniSTS	Rnor5.0
RGSC_v3.4	20	34,907,450 - 34,907,660	UniSTS	RGSC3.4
Celera	20	36,827,876 - 36,828,086	UniSTS
RH 3.4 Map	20	373.42	UniSTS
Cytogenetic Map	20	q11	UniSTS

AU046830

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	20	37,607,677 - 37,607,916	NCBI	Rnor6.0
Rnor_5.0	20	39,352,139 - 39,352,378	UniSTS	Rnor5.0
RGSC_v3.4	20	34,925,904 - 34,926,081	UniSTS	RGSC3.4
Celera	20	36,846,330 - 36,846,509	UniSTS

RH141433

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	35,515,564 - 35,515,782 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	37,628,127 - 37,628,344	NCBI	Rnor6.0
Rnor_5.0	20	39,372,589 - 39,372,806	UniSTS	Rnor5.0
RGSC_v3.4	20	34,946,312 - 34,946,529	UniSTS	RGSC3.4
Celera	20	36,866,690 - 36,866,907	UniSTS
RH 3.4 Map	20	368.7	UniSTS

AU049075

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	35,535,603 - 35,535,902 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	37,648,350 - 37,648,648	NCBI	Rnor6.0
Rnor_5.0	20	39,392,594 - 39,392,892	UniSTS	Rnor5.0
RGSC_v3.4	20	34,966,614 - 34,966,912	UniSTS	RGSC3.4
Celera	20	36,886,707 - 36,887,005	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									7		9	4
Low	3	41	43	27	18	27	8	8	67	35	32	7	8
Below cutoff		2	14	14	1	14		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003753484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001051 ⟹ ENSRNOP00000001051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	35,359,863 - 35,590,415 (-)	Ensembl
Rnor_6.0 Ensembl	20	37,465,278 - 37,700,937 (-)	Ensembl

RefSeq Acc Id:

XM_039099304 ⟹ XP_038955232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,359,865 - 35,590,992 (-)	NCBI

RefSeq Acc Id:

XM_039099305 ⟹ XP_038955233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,359,865 - 35,553,468 (-)	NCBI

RefSeq Acc Id:

XM_039099306 ⟹ XP_038955234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,359,865 - 35,554,049 (-)	NCBI

RefSeq Acc Id:

XM_039099307 ⟹ XP_038955235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,402,880 - 35,590,992 (-)	NCBI

RefSeq Acc Id:

XM_039099308 ⟹ XP_038955236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,414,792 - 35,590,992 (-)	NCBI

RefSeq Acc Id:

XM_039099309 ⟹ XP_038955237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,487,159 - 35,590,992 (-)	NCBI

RefSeq Acc Id:

XM_039099310 ⟹ XP_038955238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,486,887 - 35,590,992 (-)	NCBI

RefSeq Acc Id:

XM_039099311 ⟹ XP_038955239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	35,505,073 - 35,590,992 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038955232	(Get FASTA)	NCBI Sequence Viewer
	XP_038955233	(Get FASTA)	NCBI Sequence Viewer
	XP_038955234	(Get FASTA)	NCBI Sequence Viewer
	XP_038955235	(Get FASTA)	NCBI Sequence Viewer
	XP_038955236	(Get FASTA)	NCBI Sequence Viewer
	XP_038955237	(Get FASTA)	NCBI Sequence Viewer
	XP_038955238	(Get FASTA)	NCBI Sequence Viewer
	XP_038955239	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

ENSRNOP00000001051 ⟸ ENSRNOT00000001051

RefSeq Acc Id:	XP_038955232 ⟸ XM_039099304
- Peptide Label:	isoform X1
- UniProtKB:	D4A050 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955234 ⟸ XM_039099306
- Peptide Label:	isoform X3
- UniProtKB:	D4A050 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955233 ⟸ XM_039099305
- Peptide Label:	isoform X2
- UniProtKB:	D4A050 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955235 ⟸ XM_039099307
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038955236 ⟸ XM_039099308
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038955238 ⟸ XM_039099310
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038955237 ⟸ XM_039099309
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038955239 ⟸ XM_039099311
- Peptide Label:	isoform X8

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A050-F1-model_v2	AlphaFold	D4A050	1-1301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2323599	AgrOrtholog
BioCyc Gene	G2FUF-3609	BioCyc
Ensembl Genes	ENSRNOG00000000802	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000001051	ENTREZGENE
	ENSRNOP00000001051.8	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001051	ENTREZGENE
	ENSRNOT00000001051.8	UniProtKB/TrEMBL
Gene3D-CATH	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	BROMI	UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	UPF0183/BROMI	UniProtKB/TrEMBL
NCBI Gene	100359595	ENTREZGENE
PANTHER	PTHR13465	UniProtKB/TrEMBL
	PTHR13465:SF3	UniProtKB/TrEMBL
Pfam	BROMI	UniProtKB/TrEMBL
PhenoGen	Tbc1d32	PhenoGen
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
UniProt	D4A050	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-07-18	Tbc1d32	TBC1 domain family, member 32	LOC100359595	hypothetical protein LOC100359595	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100359595	hypothetical protein LOC100359595			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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