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ONTOLOGY REPORT - ANNOTATIONS


Term:forebrain regionalization
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Accession:GO:0021871 term browser browse the term
Definition:The regionalization process resulting in the creation of areas within the forebrain that will direct the behavior of cell migration in differentiation as the forebrain develops.



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forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2443342 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024 MGI:1346311 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:3775846|MGI:3840448 (MGI:5662366|PMID:24528677) RGD PMID:24528677 MGI:5662366 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Wnt2b Wnt family member 2B involved_in
acts_upstream_of_or_within
ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308
JBrowse link
G Wnt7b Wnt family member 7B involved_in
acts_upstream_of_or_within
ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5566553|PMID:24531968)
Ensembl
RGD
PMID:24531968 GO_REF:0000107 MGI:5566553 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:5486528 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO MGI:5527461 (MGI:5524255|PMID:23056351), (MGI:5605467|PMID:22923088) RGD PMID:22923088 PMID:23056351 MGI:5524255 MGI:5605467 NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630
JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:95388 (MGI:3043493|PMID:15147765) RGD PMID:15147765 MGI:3043493 NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613
JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858|MGI:95387 (MGI:3043493|PMID:15147765), (MGI:3606726|PMID:12764040) RGD PMID:12764040 PMID:15147765 MGI:3043493 MGI:3606726 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
ISO MGI:2176173|MGI:3802572 (MGI:5486528|PMID:23431145)
(MGI:6220563|PMID:30186101)
RGD PMID:23431145 PMID:30186101 MGI:5486528 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:3521756 (MGI:3763674|PMID:17828260) RGD PMID:17828260 MGI:3763674 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:6220563|PMID:30186101)
MGI:1856155 (MGI:3606726|PMID:12764040), (MGI:5486528|PMID:23431145)
Ensembl
RGD
PMID:12764040 PMID:23431145 PMID:30186101 GO_REF:0000107 MGI:3606726 MGI:5486528 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO MGI:2176173|MGI:4450919 (MGI:5584349|PMID:24586484) RGD PMID:24586484 MGI:5584349 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO MGI:1859823 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:1920441 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554
JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:2450901|MGI:98953 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:102764 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1857843|MGI:2150348 (MGI:3624179|PMID:16613831) RGD PMID:16613831 MGI:3624179 NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (MGI:1352305|PMID:10625551) RGD PMID:10625551 MGI:1352305 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) RGD PMID:11060228 PMID:11124115 PMID:18701439 MGI:1926244 MGI:1928687 MGI:3838261 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857494 (MGI:1339462|PMID:10393115), (MGI:1928567|PMID:11163262), (MGI:2157787|PMID:11830575)
Ensembl
RGD
PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 MGI:1339462 MGI:1928567 MGI:2157787 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1856158 (MGI:1913185|PMID:11050125), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
Ensembl
RGD
PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 MGI:1913185 MGI:1928687 MGI:3838261 MGI:5662366 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:4367927 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903
JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96785 (MGI:2154554|PMID:11719201)
Ensembl
RGD
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96785 (MGI:2154554|PMID:11719201), (MGI:3640853|PMID:16855091)
Ensembl
RGD
PMID:11719201 PMID:16855091 GO_REF:0000107 MGI:2154554 MGI:3640853 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:3838261 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1890208|MGI:88177|MGI:88180 (MGI:2154554|PMID:11719201)
Ensembl
RGD
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753|MGI:3665330 (MGI:5689191|PMID:26166575) RGD PMID:26166575 MGI:5689191 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155 (MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:3838261 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
MGI:1857796 (MGI:1926244|PMID:11060228)
GO_REF:0000107
RGD
Ensembl
PMID:11060228 PMID:9811591 GO_REF:0000107 MGI:1926244, RGD:2306311 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:3813369|PMID:18694563) RGD PMID:18694563 MGI:3813369 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        forebrain development 513
          forebrain regionalization 27
            forebrain anterior/posterior pattern specification 4
            forebrain dorsal/ventral pattern formation 7
            telencephalon regionalization + 16
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          system development 5439
            nervous system development 2753
              central nervous system development 1284
                brain development 986
                  forebrain development 513
                    forebrain regionalization 27
                      forebrain anterior/posterior pattern specification 4
                      forebrain dorsal/ventral pattern formation 7
                      telencephalon regionalization + 16
paths to the root