AABR07063281.1 (null) - Rat Genome Database

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Gene: AABR07063281.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07063281.1
Name:
RGD ID: 15011299
Description: Predicted to be involved in several processes, including cell surface receptor signaling pathway; embryonic morphogenesis; and regulation of smoothened signaling pathway. Predicted to be located in sperm cytoplasmic droplet; sperm midpiece; and sperm principal piece.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl626,390,689 - 26,485,049 (+)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 11 4 4 1 2 74 34 41 11 1
Low 3 29 46 37 19 37 7 9 1 7
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079762   ⟹   ENSRNOP00000071820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl626,390,689 - 26,399,559 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085424   ⟹   ENSRNOP00000072658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,399,950 - 26,471,099 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090342   ⟹   ENSRNOP00000070902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,474,071 - 26,485,049 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091528   ⟹   ENSRNOP00000069468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,390,764 - 26,405,964 (+)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVF8-F1-model_v2 AlphaFold A0A0G2JVF8 1-495 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000057813 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000069468.2 UniProtKB/TrEMBL
  ENSRNOP00000070902.2 UniProtKB/TrEMBL
  ENSRNOP00000072658.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085424.2 UniProtKB/TrEMBL
  ENSRNOT00000090342.2 UniProtKB/TrEMBL
  ENSRNOT00000091528.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Quino_amine_DH_bsu UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen AABR07063281.1 PhenoGen
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50969 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A096MJL0_RAT UniProtKB/TrEMBL
  A0A096MK45_RAT UniProtKB/TrEMBL
  A0A0G2JVF8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07063281.1        Symbol and Name status set to provisional 45752 PROVISIONAL