AABR07063281.1 (null) - Rat Genome Database

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Gene: AABR07063281.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07063281.1
Name:
RGD ID: 15011299
Description: Predicted to be involved in several processes, including cell surface receptor signaling pathway; embryonic morphogenesis; and regulation of smoothened signaling pathway. Predicted to be located in sperm cytoplasmic droplet; sperm midpiece; and sperm principal piece. Predicted to be part of intraciliary transport particle B.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl626,390,689 - 26,485,049 (+)EnsemblRnor6.0rn6Rnor6.0


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000079762   ⟹   ENSRNOP00000071820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl626,390,689 - 26,399,559 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085424   ⟹   ENSRNOP00000072658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,399,950 - 26,471,099 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090342   ⟹   ENSRNOP00000070902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,474,071 - 26,485,049 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091528   ⟹   ENSRNOP00000069468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)Ensembl
Rnor_6.0 Ensembl626,390,764 - 26,405,964 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000069468.2
  ENSRNOP00000070902.2
Ensembl Acc Id: ENSRNOP00000071820   ⟸   ENSRNOT00000079762
Ensembl Acc Id: ENSRNOP00000072658   ⟸   ENSRNOT00000085424
Ensembl Acc Id: ENSRNOP00000070902   ⟸   ENSRNOT00000090342
Ensembl Acc Id: ENSRNOP00000069468   ⟸   ENSRNOT00000091528

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVF8-F1-model_v2 AlphaFold A0A0G2JVF8 1-495 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000057813 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090342.2 UniProtKB/TrEMBL
  ENSRNOT00000091528.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
PANTHER IFT140/172-RELATED UniProtKB/TrEMBL
  INTRAFLAGELLAR TRANSPORT PROTEIN 172 HOMOLOG UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen AABR07063281.1 PhenoGen
RatGTEx ENSRNOG00000057813 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  Tricorn protease domain 2 UniProtKB/TrEMBL
UniProt A0A096MK45_RAT UniProtKB/TrEMBL
  A0A0G2JVF8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07063281.1        Symbol and Name status set to provisional 45752 PROVISIONAL