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ONTOLOGY REPORT - ANNOTATIONS


Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation


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pattern specification process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO MGI:108051 (MGI:3758991|PMID:17849440) RGD PMID:17849440 MGI:3758991 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Alx3 ALX homeobox 3 ISO MGI:108359 (MGI:2151109|PMID:11641221) RGD PMID:11641221 MGI:2151109 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928
JBrowse link
G Alx4 ALX homeobox 4 ISO MGI:1277097 (MGI:2151109|PMID:11641221) RGD PMID:11641221 MGI:2151109 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO
IBA
MGI:3521822 (MGI:3629263|PMID:16740478)
PMID:21873635
RGD PMID:16740478, PMID:21873635 MGI:3629263, RGD:13792537 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,258,468...12,280,459
Ensembl chr 7:12,258,468...12,275,609
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1857470 (MGI:3579956|PMID:15930101) RGD PMID:15930101 MGI:3579956 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Asph aspartate-beta-hydroxylase ISO MGI:2179287 (MGI:2177999|PMID:11773073) RGD PMID:11773073 MGI:2177999 NCBI chr 5:22,577,680...22,799,333
Ensembl chr 5:22,577,675...22,799,349
JBrowse link
G Bmp5 bone morphogenetic protein 5 ISO MGI:1858106|MGI:1930367|MGI:2153906|MGI:2153907 (MGI:51561|PMID:1339316) RGD PMID:1339316 MGI:51561 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:1857654 (MGI:77579|PMID:7590254) RGD PMID:7590254 MGI:77579 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158390|MGI:2176835 (MGI:3574741|PMID:15716346) RGD PMID:15716346 MGI:3574741 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655
JBrowse link
G Cdx1 caudal type homeo box 1 ISO MGI:2154514 (MGI:2178091|PMID:11959827) RGD PMID:11959827 MGI:2178091 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:1857928 (MGI:2178091|PMID:11959827) RGD PMID:11959827 MGI:2178091 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Chrd chordin ISO MGI:2157350 (MGI:2389288|PMID:12397106) RGD PMID:12397106 MGI:2389288 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO MGI:98493 (MGI:3614586|PMID:16399080) RGD PMID:16399080 MGI:3614586 NCBI chr11:87,338,606...87,356,644
Ensembl chr11:87,778,312...87,815,043
JBrowse link
G Dchs1 dachsous cadherin-related 1 ISO MGI:4867020 (MGI:5694502|PMID:26258302) RGD PMID:26258302 MGI:5694502 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
JBrowse link
G Disp1 dispatched RND transporter family member 1 ISO MGI:2448055|MGI:3052133 (MGI:3051703|PMID:15269168) RGD PMID:15269168 MGI:3051703 NCBI chr13:101,451,932...101,597,570
Ensembl chr13:101,451,932...101,597,570
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:102780|MGI:2150426 (MGI:3624596|PMID:16530750), (MGI:3702803|PMID:16916509) RGD PMID:16530750, PMID:16916509 MGI:3624596, MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:95664 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Fst follistatin ISO MGI:1857467 (MGI:3513220|PMID:15525533) RGD PMID:15525533 MGI:3513220 NCBI chr 2:46,537,589...46,544,813
Ensembl chr 2:46,538,700...46,544,457
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857164|MGI:95729 (MGI:2683891|PMID:14602680), (MGI:77851|PMID:8575294) RGD PMID:8575294, PMID:14602680 MGI:2683891, MGI:77851 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728|MGI:98297 (MGI:2683891|PMID:14602680) RGD PMID:14602680 MGI:2683891 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:2684328 (MGI:2682079|PMID:14608380) RGD PMID:14608380 MGI:2682079 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:108067|MGI:2150162 (MGI:2153441|PMID:11731457), (MGI:2662646|PMID:12724834), (MGI:2675248|PMID:12930780), (MGI:3579956|PMID:15930101) RGD PMID:11731457, PMID:12724834, PMID:12930780, PMID:15930101 MGI:2153441, MGI:2662646, MGI:2675248, MGI:3579956 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO MGI:1341884|MGI:2149672 (MGI:3794221|PMID:18302773) RGD PMID:18302773 MGI:3794221 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:104853|MGI:104876|MGI:2447620 (MGI:3794221|PMID:18302773) RGD PMID:18302773 MGI:3794221 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:1857530|MGI:1857626 (MGI:64469|PMID:7903601), (MGI:64470|PMID:7903600) RGD PMID:7903600, PMID:7903601 MGI:64469, MGI:64470 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Hoxa5 homeo box A5 TAS
ISO
MGI:2150397 (MGI:2177895|PMID:11900462) RGD PMID:11900462, PMID:7915120 MGI:2177895, RGD:728593
G Hoxd11 homeobox D11 ISO MGI:96204|MGI:96205 (MGI:83869|PMID:8900279) RGD PMID:8900279 MGI:83869 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd12 homeo box D12 ISO MGI:96203|MGI:96205 (MGI:83869|PMID:8900279) RGD PMID:8900279 MGI:83869 NCBI chr 3:61,597,382...61,598,503
Ensembl chr 3:61,597,382...61,598,503
JBrowse link
G Hoxd13 homeo box D13 ISO MGI:1857397|MGI:1857871|MGI:96203|MGI:96204 (MGI:2177382|PMID:11850178), (MGI:63627|PMID:8106170), (MGI:83869|PMID:8900279) RGD PMID:8106170, PMID:8900279, PMID:11850178 MGI:2177382, MGI:63627, MGI:83869 NCBI chr 3:61,590,376...61,593,692
Ensembl chr 3:61,590,376...61,593,692
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1857644 (MGI:1277795|PMID:9671585) RGD PMID:9671585 MGI:1277795 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:1347476|MGI:1857848 (MGI:1344734|PMID:10498685), (MGI:3580024|PMID:15930111)
UniProt
RGD
PMID:10498685, PMID:15930111 GO_REF:0000024, MGI:1344734, MGI:3580024 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 IEA
ISO
GO_REF:0000107
(MGI:50741|PMID:1633717)
Ensembl
RGD
PMID:1633717 GO_REF:0000107, MGI:50741 NCBI chr 6:88,442,620...89,292,454
Ensembl chr 6:88,447,749...88,917,070
JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO MGI:95843 (MGI:2675248|PMID:12930780) RGD PMID:12930780 MGI:2675248 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Nog noggin ISO MGI:1862000 (MGI:2389288|PMID:12397106) RGD PMID:12397106 MGI:2389288 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nrg3 neuregulin 3 ISO MGI:1889610 (MGI:1353819|PMID:10723730) RGD PMID:10723730 MGI:1353819 NCBI chr16:15,763,031...16,932,208
Ensembl chr16:15,764,632...15,798,974
JBrowse link
G Pax1 paired box 1 ISO MGI:1856222 (MGI:2177895|PMID:11900462) RGD PMID:11900462 MGI:2177895 NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rax retina and anterior neural fold homeobox IEA
ISO
GO_REF:0000107
MGI:1856862 (MGI:61293|PMID:13970082)
Ensembl
RGD
PMID:13970082 GO_REF:0000107, MGI:61293 NCBI chr18:61,638,352...61,642,056
Ensembl chr18:61,638,352...61,642,056
JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:109,963,726...109,966,821
Ensembl chr10:109,943,817...109,966,826
JBrowse link
G Rnf111 ring finger protein 111 ISO MGI:2680166 (MGI:1933509|PMID:11298452) RGD PMID:11298452 MGI:1933509 NCBI chr 8:76,864,343...76,940,235
Ensembl chr 8:76,864,344...76,940,196
JBrowse link
G Shh sonic hedgehog signaling molecule ISS
ISO
GO_REF:0000024
MGI:1857796|MGI:95729 (MGI:2387225|PMID:12231626), (MGI:2683891|PMID:14602680)
UniProt
RGD
PMID:12231626, PMID:14602680 GO_REF:0000024, MGI:2387225, MGI:2683891 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Shroom3 shroom family member 3 ISO MGI:1889778 (MGI:1349488|PMID:10589677) RGD PMID:10589677 MGI:1349488 NCBI chr14:16,622,767...16,903,265
Ensembl chr14:16,622,760...16,903,242
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:109344|MGI:2655195 (MGI:3624596|PMID:16530750), (MGI:3702803|PMID:16916509) RGD PMID:16530750, PMID:16916509 MGI:3624596, MGI:3702803 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:87912 (MGI:3758991|PMID:17849440) RGD PMID:17849440 MGI:3758991 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smo smoothened, frizzled class receptor ISO MGI:2176256 (MGI:3040160|PMID:15107405) RGD PMID:15107405 MGI:3040160 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sostdc1 sclerostin domain containing 1 ISO MGI:3604658 (MGI:3603904|PMID:16179481) RGD PMID:16179481 MGI:3603904 NCBI chr 6:55,812,820...55,816,994
Ensembl chr 6:55,812,747...55,817,066
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 IEA
ISO
GO_REF:0000107
MGI:3580631 (MGI:3614311|PMID:16452659)
Ensembl
RGD
PMID:16452659 GO_REF:0000107, MGI:3614311 NCBI chr20:5,535,434...5,564,657
Ensembl chr20:5,535,432...5,564,437
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:104686|MGI:2179190 (MGI:3512717|PMID:15385444), (MGI:3530686|PMID:15652707), (MGI:3614586|PMID:16399080)
UniProt
RGD
PMID:15385444, PMID:15652707, PMID:16399080 GO_REF:0000024, MGI:3512717, MGI:3530686, MGI:3614586 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx5 T-box transcription factor 5 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:2387851 (MGI:3051695|PMID:15289437)
Ensembl
RGD
PMID:15289437, PMID:21873635 GO_REF:0000107, MGI:3051695, RGD:13792537 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
G Tp63 tumor protein p63 ISO MGI:1934269 (MGI:1335635|PMID:10227294) RGD PMID:10227294 MGI:1335635 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Uncx UNC homeobox IEA
ISO
GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)
Ensembl
RGD
PMID:10804168, PMID:10804169 GO_REF:0000107, MGI:1855901, MGI:1855902 NCBI chr12:17,182,158...17,186,679
Ensembl chr12:17,182,163...17,186,679
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)
Ensembl
RGD
PMID:9389660 GO_REF:0000107, MGI:1195626 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
G Zic1 Zic family member 1 ISO (MGI:85935|PMID:9070329) RGD PMID:9070329 MGI:85935 NCBI chr 8:98,733,715...98,738,960
Ensembl chr 8:98,734,295...98,738,446
JBrowse link
G Zic3 Zic family member 3 ISO MGI:2180720 (MGI:2178095|PMID:11959836) RGD PMID:11959836 MGI:2178095 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor IEA
ISO
GO_REF:0000107
MGI:3716756 (MGI:3714080|PMID:17317769)
Ensembl
RGD
PMID:17317769 GO_REF:0000107, MGI:3714080 NCBI chr  X:67,656,253...67,828,998
Ensembl chr  X:67,656,253...67,829,026
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A IEA
ISO
GO_REF:0000107
MGI:3836420 (MGI:5449118|PMID:22939930)
Ensembl
RGD
PMID:22939930 GO_REF:0000107, MGI:5449118 NCBI chr 3:170,364,177...170,380,278
Ensembl chr 3:170,364,181...170,378,210
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:104903 (MGI:1889107|PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107, MGI:1889107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Cdx1 caudal type homeo box 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
JBrowse link
G Cdx2 caudal type homeo box 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Cdx4 caudal type homeo box 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:74,165,172...74,173,758
Ensembl chr  X:74,165,187...74,173,347
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:107405|MGI:98658 (MGI:3042338|PMID:15004567), (MGI:3776330|PMID:18241853) RGD PMID:15004567, PMID:18241853 MGI:3042338, MGI:3776330 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:2148590 (MGI:1353237|PMID:10662781)
Ensembl
RGD
PMID:10662781 GO_REF:0000107, MGI:1353237 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Gpc3 glypican 3 IEA
ISO
GO_REF:0000107
MGI:88180 (MGI:1889107|PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107, MGI:1889107 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:1341884 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:1341800 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:2449177 (MGI:2448170|PMID:12490556) RGD PMID:12490556 MGI:2448170 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:1201414 (MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:97449 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024, MGI:1346311 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:61,066,170...61,134,963
Ensembl chr 9:61,066,175...61,134,963
JBrowse link
G Rnf2 ring finger protein 2 IEA
ISO
GO_REF:0000107
MGI:2447529 (MGI:2389282|PMID:12183370)
Ensembl
RGD
PMID:12183370 GO_REF:0000107, MGI:2389282 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:3794506|PMID:18321982) RGD PMID:18321982 MGI:3794506 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Ski SKI proto-oncogene ISO MGI:2177555 (MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:3044914 (MGI:3044041|PMID:15155583) RGD PMID:15155583 MGI:3044041 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:1201414 (MGI:3776330|PMID:18241853) RGD PMID:18241853 MGI:3776330 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Wls Wnt ligand secretion mediator ISS
ISO
GO_REF:0000024
(MGI:4397730|PMID:19841259)
UniProt
RGD
PMID:19841259 GO_REF:0000024, MGI:4397730 NCBI chr 2:266,315,036...266,431,220
Ensembl chr 2:266,315,036...266,432,558
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902 (MGI:3771246|PMID:18028899) RGD PMID:18028899 MGI:3771246 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Tasor transcription activation suppressor IEA
ISO
GO_REF:0000107
(MGI:6109647|PMID:28839193)
Ensembl
RGD
PMID:28839193 GO_REF:0000107, MGI:6109647 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
ISS
(PMID:9207801)
GO_REF:0000024
RGD
UniProt
PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
(MGI:4835157|PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107, MGI:4835157 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Acvr2a activin A receptor type 2A IEA
ISO
GO_REF:0000107
MGI:1857709|MGI:2179547|MGI:87912 (MGI:1344152|PMID:10452853), (MGI:3689276|PMID:16991118)
Ensembl
RGD
PMID:10452853, PMID:16991118 GO_REF:0000107, MGI:1344152, MGI:3689276 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B ISO
IEA
(PMID:9916847)
MGI:102806|MGI:1095407|MGI:1857709|MGI:2179547|MGI:98728 (MGI:1344152|PMID:10452853), (MGI:3525050|PMID:15542835), (MGI:3689276|PMID:16991118), (MGI:3695190|PMID:16845371), (MGI:894948|PMID:9242489)
GO_REF:0000107
RGD
Ensembl
PMID:9242489, PMID:9916847, PMID:10452853, PMID:15542835, PMID:16845371, PMID:16991118 GO_REF:0000107, MGI:1344152, MGI:3525050, MGI:3689276, MGI:3695190, MGI:894948 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:1096359|MGI:1857891|MGI:2180721|MGI:2679699 (MGI:3530707|PMID:15652703), (MGI:3578600|PMID:15872003), (MGI:3612223|PMID:16368932), (MGI:3703483|PMID:17067568) RGD PMID:15652703, PMID:15872003, PMID:16368932, PMID:17067568 MGI:3530707, MGI:3578600, MGI:3612223, MGI:3703483 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Alx1 ALX homeobox 1 ISO MGI:108359 (MGI:1314705|PMID:9847249) RGD PMID:9847249 MGI:1314705 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Alx4 ALX homeobox 4 ISO MGI:104621|MGI:1857484 (MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249) RGD PMID:9374397, PMID:9847249 MGI:1098911, MGI:1314705 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO MGI:2449944 (MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:2449253 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Arc activity-regulated cytoskeleton-associated protein ISO MGI:2386454 (MGI:1355000|PMID:10727859) RGD PMID:10727859 MGI:1355000 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Barx1 BARX homeobox 1 ISO MGI:3578634 (MGI:3766872|PMID:17855428) RGD PMID:17855428 MGI:3766872 NCBI chr17:14,824,721...14,828,196
Ensembl chr17:14,824,734...14,828,329
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:140,703,619...140,709,319
Ensembl chr 4:140,703,619...140,709,319
JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:180,230,742...180,235,138
Ensembl chr 4:180,232,382...180,234,804
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158342 (MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO MGI:2158503|MGI:87912 (MGI:1855789|PMID:10772805), (MGI:3525050|PMID:15542835) RGD PMID:10772805, PMID:15542835 MGI:1855789, MGI:3525050 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO MGI:3823037|MGI:3841299 (MGI:3821803|PMID:18794365), (MGI:3840601|PMID:18974875) RGD PMID:18794365, PMID:18974875 MGI:3821803, MGI:3840601 NCBI chr10:95,248,573...95,350,162
Ensembl chr10:95,250,294...95,349,789
JBrowse link
G Btg2 BTG anti-proliferation factor 2 ISO MGI:3525505 (MGI:3525050|PMID:15542835) RGD PMID:15542835 MGI:3525050 NCBI chr13:50,913,185...50,916,944
Ensembl chr13:50,913,180...50,916,982
JBrowse link
G Cdon cell adhesion associated, oncogene regulated IEA
ISO
GO_REF:0000107
MGI:2653120 (MGI:4422144|PMID:19754878)
Ensembl
RGD
PMID:19754878 GO_REF:0000107, MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Cdx1 caudal type homeo box 1 IEA
ISO
GO_REF:0000107
MGI:2154514|MGI:97858 (MGI:2154839|PMID:11784046), (MGI:77274|PMID:7585967)
Ensembl
RGD
PMID:7585967, PMID:11784046 GO_REF:0000107, MGI:2154839, MGI:77274 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:88362 (MGI:4398801|PMID:19853565) RGD PMID:19853565 MGI:4398801 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Cdx4 caudal type homeo box 4 ISO MGI:88361 (MGI:4398801|PMID:19853565) RGD PMID:19853565 MGI:4398801 NCBI chr  X:74,165,172...74,173,758
Ensembl chr  X:74,165,187...74,173,347
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 ISO MGI:2668337|MGI:4430218 (MGI:3835694|PMID:18849982), (MGI:4429791|PMID:19357712) RGD PMID:18849982, PMID:19357712 MGI:3835694, MGI:4429791 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO (MGI:1197794|PMID:9501024) RGD PMID:9501024 MGI:1197794 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO
IBA
MGI:1857543 (MGI:2136711|PMID:11412024)
PMID:21873635
RGD PMID:11412024, PMID:21873635 MGI:2136711, RGD:13792537 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO MGI:98493 (MGI:3614586|PMID:16399080) RGD PMID:16399080 MGI:3614586 NCBI chr11:87,338,606...87,356,644
Ensembl chr11:87,778,312...87,815,043
JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 ISO MGI:3045424 (MGI:3044441|PMID:15148409) RGD PMID:15148409 MGI:3044441 NCBI chr 5:166,464,170...166,513,030
Ensembl chr 5:166,464,252...166,513,027
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO MGI:2183292|MGI:2679699 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 ISO MGI:1096359 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335
JBrowse link
G Emx2 empty spiracles homeobox 2 ISO MGI:2148858|MGI:97490 (MGI:2386059|PMID:12196586), (MGI:3578670|PMID:15917450) RGD PMID:12196586, PMID:15917450 MGI:2386059, MGI:3578670 NCBI chr 1:280,633,938...280,640,946
Ensembl chr 1:280,633,938...280,640,946
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:99783 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Foxh1 forkhead box H1 ISO MGI:2387775 (MGI:1934969|PMID:11358868) RGD PMID:11358868 MGI:1934969 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:4346364 (MGI:4367921|PMID:19877275) RGD PMID:19877275 MGI:4367921 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gdf11 growth differentiation factor 11 ISO MGI:2449672|MGI:5544775 (MGI:1339513|PMID:10391213), (MGI:5509072|PMID:23918385) RGD PMID:10391213, PMID:23918385 MGI:1339513, MGI:5509072 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:5439039|PMID:22841643) RGD PMID:22841643 MGI:5439039 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276|MGI:3798847|MGI:95728 (MGI:3053244|PMID:15315762), (MGI:5439039|PMID:22841643) RGD PMID:15315762, PMID:22841643 MGI:3053244, MGI:5439039 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 ISO (MGI:3578569|PMID:15857914) RGD PMID:15857914 MGI:3578569 NCBI chr14:21,039,990...21,056,413
Ensembl chr14:21,039,990...21,056,452
JBrowse link
G Helt helt bHLH transcription factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:49,185,560...49,187,293
Ensembl chr16:49,185,560...49,187,293
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes2 hes family bHLH transcription factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,338,097...169,339,142
Ensembl chr 5:169,338,097...169,339,142
JBrowse link
G Hes3 hes family bHLH transcription factor 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
G Hes5 hes family bHLH transcription factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Hes6 hes family bHLH transcription factor 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:98,549,698...98,551,438
Ensembl chr 9:98,549,705...98,551,438
JBrowse link
G Hes7 hes family bHLH transcription factor 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,704,485...55,710,523
Ensembl chr10:55,707,164...55,709,687
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Heyl hes-related family bHLH transcription factor with YRPW motif-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
JBrowse link
G Hhex hematopoietically expressed homeobox ISO (MGI:3777521|PMID:16936074) RGD PMID:16936074 MGI:3777521 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 IEA
ISO
GO_REF:0000107
MGI:1314872 (MGI:3619785|PMID:16537918)
Ensembl
RGD
PMID:16537918 GO_REF:0000107, MGI:3619785 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO MGI:1314872 (MGI:3619785|PMID:16537918) RGD PMID:16537918 MGI:3619785 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:2176174|MGI:2670936 (MGI:3578600|PMID:15872003) RGD PMID:15872003 MGI:3578600 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Hoxa1 homeobox A1 ISO MGI:3056069|MGI:96182 (MGI:1346308|PMID:10529420), (MGI:3055618|PMID:15367676) RGD PMID:10529420, PMID:15367676 MGI:1346308, MGI:3055618 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hoxa10 homeobox A10 ISO MGI:96192|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,285,940...82,295,892
Ensembl chr 4:82,285,528...82,295,470
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96193|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:1857626 (MGI:1098901|PMID:9367425) RGD PMID:9367425 MGI:1098901 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Hoxa3 homeobox A3 ISO
IBA
MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667), (MGI:67616|PMID:7913519)
PMID:21873635
RGD PMID:7913519, PMID:9441667, PMID:21873635 MGI:1195045, MGI:67616, RGD:13792537 NCBI chr 4:82,137,802...82,181,836
Ensembl chr 4:82,138,683...82,141,385
JBrowse link
G Hoxa4 homeo box A4 ISO
IBA
MGI:2150391|MGI:96185|MGI:96208 (MGI:67413|PMID:7918106), (MGI:74948|PMID:7628700)
PMID:21873635
RGD PMID:7628700, PMID:7918106, PMID:21873635 MGI:67413, MGI:74948, RGD:13792537 NCBI chr 4:82,158,234...82,160,317
Ensembl chr 4:82,158,892...82,160,240
JBrowse link
G Hoxa5 homeo box A5 ISO
IBA
MGI:2150397|MGI:3723623|MGI:96186|MGI:96196 (MGI:1203259|PMID:9603431), (MGI:3720535|PMID:17626057), (MGI:3723390|PMID:17417799), (MGI:63693|PMID:7901120)
PMID:21873635
RGD PMID:7901120, PMID:9603431, PMID:17417799, PMID:17626057, PMID:21873635 MGI:1203259, MGI:3720535, MGI:3723390, MGI:63693, RGD:13792537
G Hoxa6 homeobox A6 ISO
IBA
MGI:2150392|MGI:96187|MGI:96197 (MGI:3720535|PMID:17626057), (MGI:67413|PMID:7918106)
PMID:21873635
RGD PMID:7918106, PMID:17626057, PMID:21873635 MGI:3720535, MGI:67413, RGD:13792537 NCBI chr 4:82,173,478...82,183,597
Ensembl chr 4:82,173,293...82,263,302
JBrowse link
G Hoxa7 homeobox A7 ISO
IBA
MGI:96188 (MGI:1313067|PMID:9784603)
PMID:21873635
RGD PMID:9784603, PMID:21873635 MGI:1313067, RGD:13792537 NCBI chr 4:82,184,299...82,187,890
Ensembl chr 4:82,183,196...82,186,190
JBrowse link
G Hoxa9 homeobox A9 ISO
IBA
MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797), (MGI:85243|PMID:9013929)
PMID:21873635
RGD PMID:8625797, PMID:9013929, PMID:17626057, PMID:21873635 MGI:3720535, MGI:78984, MGI:85243, RGD:13792537
G Hoxb1 homeo box B1 ISO MGI:96170|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1346308|PMID:10529420), (MGI:1859107|PMID:10885747) RGD PMID:10529420, PMID:10885747 MGI:1346308, MGI:1859107 NCBI chr10:84,214,358...84,215,812
Ensembl chr10:84,214,358...84,215,687
JBrowse link
G Hoxb2 homeobox B2 ISO MGI:2151772|MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:85074|PMID:9012503) RGD PMID:9012503, PMID:10885747 MGI:1859107, MGI:85074 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688
JBrowse link
G Hoxb3 homeo box B3 ISO
IBA
MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (MGI:1195045|PMID:9441667), (MGI:1859107|PMID:10885747)
PMID:21873635
RGD PMID:9441667, PMID:10885747, PMID:21873635 MGI:1195045, MGI:1859107, RGD:13792537 NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796
JBrowse link
G Hoxb4 homeo box B4 ISO
IBA
MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:74948|PMID:7628700), (MGI:85074|PMID:9012503)
PMID:21873635
RGD PMID:7628700, PMID:9012503, PMID:10885747, PMID:21873635 MGI:1859107, MGI:74948, MGI:85074, RGD:13792537 NCBI chr10:84,167,331...84,169,913
Ensembl chr10:84,167,331...84,169,907
JBrowse link
G Hoxb5 homeo box B5 ISO
IBA
MGI:2151484|MGI:96177|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96196 (MGI:1859107|PMID:10885747), (MGI:3720535|PMID:17626057), (MGI:70296|PMID:7828847)
PMID:21873635
RGD PMID:7828847, PMID:10885747, PMID:17626057, PMID:21873635 MGI:1859107, MGI:3720535, MGI:70296, RGD:13792537 NCBI chr10:84,152,152...84,154,360
Ensembl chr10:84,152,152...84,154,360
JBrowse link
G Hoxb6 homeo box B6 ISO
IBA
MGI:2151485|MGI:96178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190|MGI:96197 (MGI:1859107|PMID:10885747), (MGI:3720535|PMID:17626057), (MGI:70296|PMID:7828847)
PMID:21873635
RGD PMID:7828847, PMID:10885747, PMID:17626057, PMID:21873635 MGI:1859107, MGI:3720535, MGI:70296, RGD:13792537 NCBI chr10:84,147,331...84,150,238
Ensembl chr10:84,147,836...84,149,600
JBrowse link
G Hoxb7 homeo box B7 ISO
IBA
MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (MGI:1313067|PMID:9784603), (MGI:1859107|PMID:10885747)
PMID:21873635
RGD PMID:9784603, PMID:10885747, PMID:21873635 MGI:1313067, MGI:1859107, RGD:13792537 NCBI chr10:84,135,224...84,138,642
Ensembl chr10:84,135,116...84,138,637
JBrowse link
G Hoxb8 homeo box B8 IEA
ISO
GO_REF:0000107
MGI:1934178|MGI:2683089|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190|MGI:96198|MGI:96209 (MGI:1349283|PMID:10559485), (MGI:1859107|PMID:10885747), (MGI:1933164|PMID:11311170), (MGI:2681074|PMID:14623233)
Ensembl
RGD
PMID:10559485, PMID:10885747, PMID:11311170, PMID:14623233 GO_REF:0000107, MGI:1349283, MGI:1859107, MGI:1933164, MGI:2681074 NCBI chr10:84,131,484...84,133,874
Ensembl chr10:84,131,495...84,133,246
JBrowse link
G Hoxb9 homeo box B9 ISO
IBA
MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (MGI:1859107|PMID:10885747), (MGI:3720535|PMID:17626057), (MGI:85243|PMID:9013929)
PMID:21873635
RGD PMID:9013929, PMID:10885747, PMID:17626057, PMID:21873635 MGI:1859107, MGI:3720535, MGI:85243, RGD:13792537 NCBI chr10:84,119,772...84,124,963
Ensembl chr10:84,119,884...84,123,390
JBrowse link
G Hoxc10 homeo box C10 ISO MGI:96171|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxc11 homeobox C11 ISO MGI:96172|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580
JBrowse link
G Hoxc13 homeobox C13 ISO MGI:1926422 (MGI:1195385|PMID:9420327) RGD PMID:9420327 MGI:1195385 NCBI chr 7:144,531,814...144,538,298
Ensembl chr 7:144,531,814...144,537,966
JBrowse link
G Hoxc4 homeo box C4 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:1857570|MGI:2150683 (MGI:79121|PMID:8626021), (MGI:81673|PMID:8660891)
Ensembl
RGD
PMID:8626021, PMID:8660891, PMID:21873635 GO_REF:0000107, MGI:79121, MGI:81673, RGD:13792537 NCBI chr 7:144,646,605...144,652,589
Ensembl chr 7:144,647,587...144,650,129
JBrowse link
G Hoxc5 homeo box C5 ISO
IBA
MGI:96177|MGI:96186 (MGI:3720535|PMID:17626057)
PMID:21873635
RGD PMID:17626057, PMID:21873635 MGI:3720535, RGD:13792537 NCBI chr 7:144,628,120...144,631,542
Ensembl chr 7:144,628,120...144,631,542
JBrowse link
G Hoxc6 homeo box C6 ISO
IBA
MGI:96178|MGI:96187 (MGI:3720535|PMID:17626057)
PMID:21873635
RGD PMID:17626057, PMID:21873635 MGI:3720535, RGD:13792537 NCBI chr 7:144,612,230...144,626,036
Ensembl chr 7:144,623,555...144,625,516
JBrowse link
G Hoxc8 homeobox C8 IEA
ISO
GO_REF:0000107
MGI:2149030|MGI:96189|MGI:96209 (MGI:1933164|PMID:11311170)
Ensembl
RGD
PMID:11311170 GO_REF:0000107, MGI:1933164 NCBI chr 7:144,605,072...144,607,639
Ensembl chr 7:144,605,058...144,608,538
JBrowse link
G Hoxc9 homeobox C9 ISO MGI:2150685|MGI:96180|MGI:96190|MGI:96210 (MGI:3720535|PMID:17626057), (MGI:73980|PMID:7547473) RGD PMID:7547473, PMID:17626057 MGI:3720535, MGI:73980 NCBI chr 7:144,592,462...144,598,807
Ensembl chr 7:144,595,960...144,598,632
JBrowse link
G Hoxd10 homeo box D10 ISO MGI:96171|MGI:96192|MGI:96210 (MGI:1350864|PMID:10642795), (MGI:2667742|PMID:12869760) RGD PMID:10642795, PMID:12869760 MGI:1350864, MGI:2667742 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172|MGI:96193 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd13 homeo box D13 ISO MGI:1857871 (MGI:63627|PMID:8106170) RGD PMID:8106170 MGI:63627 NCBI chr 3:61,590,376...61,593,692
Ensembl chr 3:61,590,376...61,593,692
JBrowse link
G Hoxd3 homeo box D3 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:1857959|MGI:96175|MGI:96184 (MGI:1195045|PMID:9441667), (MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
Ensembl
RGD
PMID:7910549, PMID:7913519, PMID:9441667, PMID:21873635 GO_REF:0000107, MGI:1195045, MGI:63793, MGI:67616, RGD:13792537 NCBI chr 3:61,650,569...61,670,285
Ensembl chr 3:61,658,245...61,670,282
JBrowse link
G Hoxd4 homeo box D4 ISO
IBA
MGI:2151488|MGI:96176 (MGI:72992|PMID:7750651), (MGI:74948|PMID:7628700)
PMID:21873635
RGD PMID:7628700, PMID:7750651, PMID:21873635 MGI:72992, MGI:74948, RGD:13792537 NCBI chr 3:61,634,005...61,653,581
Ensembl chr 3:61,634,005...61,651,056
JBrowse link
G Hoxd8 homeobox D8 ISO MGI:2151815|MGI:96189|MGI:96198 (MGI:1933164|PMID:11311170) RGD PMID:11311170 MGI:1933164 NCBI chr 3:61,627,329...61,629,743
Ensembl chr 3:61,627,383...61,628,628
JBrowse link
G Hoxd9 homeo box D9 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:2150414|MGI:96180|MGI:96190|MGI:96199|MGI:96202 (MGI:1350864|PMID:10642795), (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797)
Ensembl
RGD
PMID:8625797, PMID:10642795, PMID:17626057, PMID:21873635 GO_REF:0000107, MGI:1350864, MGI:3720535, MGI:78984, RGD:13792537 NCBI chr 3:61,620,192...61,622,360
Ensembl chr 3:61,620,192...61,622,359
JBrowse link
G Htt huntingtin ISO MGI:1857180 (MGI:3609520|PMID:16109169) RGD PMID:16109169 MGI:3609520 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 ISO (MGI:3578569|PMID:15857914) RGD PMID:15857914 MGI:3578569 NCBI chr 1:213,765,825...213,767,841
Ensembl chr 1:213,766,758...213,767,815
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:2157527|MGI:3027342 (MGI:2660994|PMID:12701101), (MGI:3579954|PMID:15930098) RGD PMID:12701101, PMID:15930098 MGI:2660994, MGI:3579954 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:1861960 (MGI:1336552|PMID:10220415) RGD PMID:10220415 MGI:1336552 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO MGI:1932339 (MGI:3530206|PMID:15741318), (MGI:3625774|PMID:16618927) RGD PMID:15741318, PMID:16618927 MGI:3530206, MGI:3625774 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:1347476 (MGI:1344734|PMID:10498685)
UniProt
RGD
PMID:10498685 GO_REF:0000024, MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G LOC100909604 homeobox protein Hox-A6-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,259,273...82,270,004
Ensembl chr 4:82,173,293...82,263,302
JBrowse link
G LOC100911511 homeobox protein Hox-A6-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC102554748 nidogen-2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G LOC103689925 homeobox protein Hox-A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,191,804...82,199,025
Ensembl chr 4:82,192,963...82,194,927
JBrowse link
G LOC103692128 homeobox protein Hox-A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,277,599...82,284,820
Ensembl chr 4:82,192,963...82,194,927
Ensembl chr 4:82,192,963...82,194,927
JBrowse link
G LOC108348320 homeobox protein Hox-A3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lrp5 LDL receptor related protein 5 ISO
IBA
MGI:1298218 (MGI:3045836|PMID:15142971)
PMID:21873635
RGD PMID:15142971, PMID:21873635 MGI:3045836, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:1278315|MGI:1861309|MGI:2156191 (MGI:3045836|PMID:15142971), (MGI:3603992|PMID:16126904), (MGI:4413372|PMID:19795512)
PMID:21873635
RGD PMID:15142971, PMID:16126904, PMID:19795512, PMID:21873635 MGI:3045836, MGI:3603992, MGI:4413372, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mllt3 MLLT3, super elongation complex subunit ISO MGI:2388982 (MGI:2387913|PMID:12242306) RGD PMID:12242306 MGI:2387913 NCBI chr 5:106,103,498...106,202,559
Ensembl chr 5:106,103,407...106,207,126
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:97169 (MGI:4948979|PMID:21465616) RGD PMID:21465616 MGI:4948979 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 IEA
ISO
GO_REF:0000107
MGI:97168 (MGI:4948979|PMID:21465616)
Ensembl
RGD
PMID:21465616 GO_REF:0000107, MGI:4948979 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Neurod1 neuronal differentiation 1 ISO MGI:2148229 (MGI:3613103|PMID:16368089) RGD PMID:16368089 MGI:3613103 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:106676|MGI:2158732|MGI:2180793|MGI:2656539|MGI:3056345 (MGI:2136068|PMID:11418863), (MGI:2155575|PMID:11311163), (MGI:3042338|PMID:15004567), (MGI:3056019|PMID:15302604), (MGI:3624254|PMID:16496285) RGD PMID:11311163, PMID:11418863, PMID:15004567, PMID:15302604, PMID:16496285 MGI:2136068, MGI:2155575, MGI:3042338, MGI:3056019, MGI:3624254 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 ISO MGI:3579117|MGI:3579118 (MGI:3578605|PMID:15829524) RGD PMID:15829524 MGI:3578605 NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473
JBrowse link
G Otx1 orthodenticle homeobox 1 IEA
ISO
GO_REF:0000107
MGI:97451 (MGI:3039992|PMID:15105370)
Ensembl
RGD
PMID:15105370 GO_REF:0000107, MGI:3039992 NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:109448|MGI:1857502|MGI:2661067 (MGI:1197794|PMID:9501024), (MGI:2136711|PMID:11412024), (MGI:2656991|PMID:12652306) RGD PMID:9501024, PMID:11412024, PMID:12652306 MGI:1197794, MGI:2136711, MGI:2656991 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax6 paired box 6 ISO MGI:1856155|MGI:95388 (MGI:2386059|PMID:12196586), (MGI:3578670|PMID:15917450) RGD PMID:12196586, PMID:15917450 MGI:2386059, MGI:3578670 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pbx1 PBX homeobox 1 ISO MGI:2155612 (MGI:2151355|PMID:11566859) RGD PMID:11566859 MGI:2151355 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO MGI:1857633|MGI:1932339 (MGI:3530206|PMID:15741318), (MGI:80640|PMID:8625838) RGD PMID:8625838, PMID:15741318 MGI:3530206, MGI:80640 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
RGD PMID:18519639 MGI:3795695 NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
JBrowse link
G Pds5a PDS5 cohesin associated factor A ISO MGI:3847257 (MGI:3847057|PMID:19412548) RGD PMID:19412548 MGI:3847057 NCBI chr14:44,185,445...44,282,308
Ensembl chr14:44,185,446...44,280,079
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:1931079|MGI:88360 (MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) RGD PMID:8388780, PMID:11784046 MGI:2154839, MGI:60925 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Ring1 ring finger protein 1 ISO MGI:1926913|MGI:99150 (MGI:1926247|PMID:11060235), (MGI:3628673|PMID:16624538) RGD PMID:11060235, PMID:16624538 MGI:1926247, MGI:3628673 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 ISO MGI:3706668 (MGI:3703453|PMID:17215307) RGD PMID:17215307 MGI:3703453 NCBI chr 5:139,379,256...139,466,805
Ensembl chr 5:139,385,429...139,466,081
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 ISO MGI:96995|MGI:99161 (MGI:3530206|PMID:15741318) RGD PMID:15741318 MGI:3530206 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO MGI:108078 (MGI:3618960|PMID:16467359) RGD PMID:16467359 MGI:3618960 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:892014 (MGI:3618960|PMID:16467359) RGD PMID:16467359 MGI:3618960 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shh sonic hedgehog signaling molecule ISO MGI:1857796|MGI:1934261|MGI:2387802 (MGI:1928592|PMID:11118883), (MGI:2135419|PMID:11389830) RGD PMID:11118883, PMID:11389830 MGI:1928592, MGI:2135419 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad2 SMAD family member 2 ISS
ISO
GO_REF:0000024
MGI:1857691|MGI:2668416 (MGI:1201281|PMID:9529255), (MGI:2136068|PMID:11418863), (MGI:2667288|PMID:12842913)
UniProt
RGD
PMID:9529255, PMID:11418863, PMID:12842913 GO_REF:0000024, MGI:1201281, MGI:2136068, MGI:2667288 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad4 SMAD family member 4 ISO MGI:1857691|MGI:2656539|MGI:2668393 (MGI:3051711|PMID:15215210) RGD PMID:15215210 MGI:3051711 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176256|MGI:2450929 (MGI:5438143|PMID:22987639)
Ensembl
RGD
PMID:22987639 GO_REF:0000107, MGI:5438143 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:104686|MGI:2179191 (MGI:3039048|PMID:15084464), (MGI:3614586|PMID:16399080)
UniProt
RGD
PMID:15084464, PMID:16399080 GO_REF:0000024, MGI:3039048, MGI:3614586 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:3042261|MGI:3042262|MGI:3042264 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:87912 (MGI:3695190|PMID:16845371) RGD PMID:16845371 MGI:3695190 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 ISO MGI:3721421 (MGI:3720547|PMID:17586487) RGD PMID:17586487 MGI:3720547 NCBI chr18:80,860,995...80,907,744
Ensembl chr18:80,862,372...80,865,584
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3844764|PMID:19334287) RGD PMID:19334287 MGI:3844764 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:1857642 (MGI:3835694|PMID:18849982) RGD PMID:18849982 MGI:3835694 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2178826 (MGI:1341483|PMID:10431240) RGD PMID:10431240 MGI:1341483 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
G Wnt3a Wnt family member 3A ISO (MGI:3044441|PMID:15148409) RGD PMID:15148409 MGI:3044441 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:1857617 (MGI:3039991|PMID:15073149), (MGI:4413372|PMID:19795512) RGD PMID:15073149, PMID:19795512 MGI:3039991, MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Yy1 YY1 transcription factor ISO MGI:1101770|MGI:2445451 (MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:3628673 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO MGI:2182708 (MGI:1859075|PMID:10835630) RGD PMID:10835630 MGI:1859075 NCBI chr 8:52,980,226...53,146,765
Ensembl chr 8:52,985,313...53,146,953
JBrowse link
G Zic3 Zic family member 3 ISO MGI:97359 (MGI:3624254|PMID:16496285) RGD PMID:16496285 MGI:3624254 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:98956 (MGI:1891551|PMID:11029008)
PMID:21873635
RGD PMID:11029008, PMID:21873635 MGI:1891551, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1298218 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO MGI:2449944 (MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:2449253 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:3513254 (MGI:3715395|PMID:17531978) RGD PMID:17531978 MGI:3715395 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Wnt6 Wnt family member 6 ISO (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166
JBrowse link
BMP signaling pathway involved in heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO
ISS
(PMID:19736317)
GO_REF:0000024
RGD
UniProt
PMID:19736317 GO_REF:0000024 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO
ISS
IEA
(PMID:20702560)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:20702560 GO_REF:0000024, GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
ISS
GO_REF:0000107
(MGI:3710018|PMID:17442697)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17442697 GO_REF:0000024, GO_REF:0000107, MGI:3710018 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin ISO
IEA
(PMID:11472837)
GO_REF:0000107
RGD
Ensembl
PMID:11472837 GO_REF:0000107 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISO MGI:1857507 (MGI:64171|PMID:7903221) RGD PMID:7903221 MGI:64171 NCBI chr20:22,452,170...22,461,018
Ensembl chr20:22,454,463...22,459,025
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:1857626 (MGI:1098901|PMID:9367425) RGD PMID:9367425 MGI:1098901 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Mafb MAF bZIP transcription factor B ISO MGI:1856419 (MGI:67780|PMID:7925021) RGD PMID:7925021 MGI:67780 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 IEA
ISO
GO_REF:0000107
(MGI:5566553|PMID:24531968)
Ensembl
RGD
PMID:24531968 GO_REF:0000107, MGI:5566553 NCBI chr19:10,423,534...10,460,674
Ensembl chr19:10,423,501...10,460,674
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:3707409 (MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:5486528 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Dmrta2 DMRT-like family A2 ISO MGI:5527461 (MGI:5524255|PMID:23056351), (MGI:5605467|PMID:22923088) RGD PMID:22923088, PMID:23056351 MGI:5524255, MGI:5605467 NCBI chr 5:129,754,295...129,760,045
Ensembl chr 5:129,756,149...129,758,986
JBrowse link
G Emx1 empty spiracles homeobox 1 ISO MGI:95388 (MGI:3043493|PMID:15147765) RGD PMID:15147765 MGI:3043493 NCBI chr 4:116,967,646...116,984,136
Ensembl chr 4:116,968,000...116,985,551
JBrowse link
G Emx2 empty spiracles homeobox 2 ISO MGI:2148858|MGI:95387 (MGI:3043493|PMID:15147765), (MGI:3606726|PMID:12764040) RGD PMID:12764040, PMID:15147765 MGI:3043493, MGI:3606726 NCBI chr 1:280,633,938...280,640,946
Ensembl chr 1:280,633,938...280,640,946
JBrowse link
G Eomes eomesodermin ISO MGI:2176173|MGI:3802572 (MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:5486528 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 ISO MGI:3521756 (MGI:3763674|PMID:17828260) RGD PMID:17828260 MGI:3763674 NCBI chr 2:5,569,954...5,579,894
Ensembl chr 2:5,569,935...5,579,894
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155 (MGI:3606726|PMID:12764040), (MGI:5486528|PMID:23431145)
Ensembl
RGD
PMID:12764040, PMID:23431145 GO_REF:0000107, MGI:3606726, MGI:5486528 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Tra2b transformer 2 beta homolog ISO MGI:2176173|MGI:4450919 (MGI:5584349|PMID:24586484) RGD PMID:24586484 MGI:5584349 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
GO_REF:0000107
MGI:1861919 (MGI:2181244|PMID:12001066)
Ensembl
RGD
PMID:12001066 GO_REF:0000107, MGI:2181244 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dll3 delta like canonical Notch ligand 3 IEA
ISO
GO_REF:0000107
MGI:1857008 (MGI:2181244|PMID:12001066)
Ensembl
RGD
PMID:12001066 GO_REF:0000107, MGI:2181244 NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO MGI:1933734 (MGI:2181244|PMID:12001066) RGD PMID:12001066 MGI:2181244 NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1857877 (MGI:2181244|PMID:12001066) RGD PMID:12001066 MGI:2181244 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107, MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting ISO (MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:4946570 NCBI chr14:89,047,949...89,193,579
Ensembl chr14:89,060,447...89,179,507
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:4946570 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Tmem107 transmembrane protein 107 ISO MGI:5007367 (MGI:6405644|PMID:31887266) RGD PMID:31887266 MGI:6405644 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
determination of bilateral symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:1857891 (MGI:3575989|PMID:15731404) RGD PMID:15731404 MGI:3575989 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc103 coiled-coil domain containing 103 ISO (PMID:22581229) RGD PMID:22581229 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 ISO
IEA
(PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
ISS
GO_REF:0000107
MGI:3722325 (MGI:3839019|PMID:18043505)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18043505 GO_REF:0000024, GO_REF:0000107, MGI:3839019 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist ISO (MGI:5507937|PMID:23063586) RGD PMID:23063586 MGI:5507937 NCBI chr13:92,894,431...92,988,137
Ensembl chr13:92,894,431...92,988,137
JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist IEA
ISO
GO_REF:0000107
(MGI:1203284|PMID:9660951)
Ensembl
RGD
PMID:9660951 GO_REF:0000107, MGI:1203284 NCBI chr 5:157,524,569...157,535,701
Ensembl chr 5:157,524,513...157,535,664
JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2176158 (MGI:3574743|PMID:15750185) RGD PMID:15750185 MGI:3574743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 ISO
IBA
(MGI:3055649|PMID:15466485)
PMID:21873635
RGD PMID:15466485, PMID:21873635 MGI:3055649, RGD:13792537 NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (MGI:1927045|PMID:11076684) RGD PMID:11076684 MGI:1927045 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 ISO MGI:1857639 (MGI:1203269|PMID:9576835) RGD PMID:9576835 MGI:1203269 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
ISS
GO_REF:0000107
MGI:3722325 (MGI:3839019|PMID:18043505)
GO_REF:0000024
(PMID:23063620)
Ensembl
RGD
UniProt
PMID:18043505, PMID:23063620 GO_REF:0000024, GO_REF:0000107, MGI:3839019 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mmp21 matrix metallopeptidase 21 ISO (MGI:5700258|PMID:26437028) RGD PMID:26437028 MGI:5700258 NCBI chr 1:205,745,119...205,750,786
Ensembl chr 1:205,745,119...205,750,786
JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 ISO MGI:5445347 (MGI:5607335|PMID:25192045) RGD PMID:25192045 MGI:5607335 NCBI chr 8:23,000,912...23,014,707
Ensembl chr 8:23,000,872...23,014,499
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1856184 (MGI:1328649|PMID:10349618) RGD PMID:10349618 MGI:1328649 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO (PMID:20007846) RGD PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dand5 DAN domain BMP antagonist family member 5 ISO (MGI:3055649|PMID:15466485) RGD PMID:15466485 MGI:3055649 NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
(MGI:5142377|PMID:11517919)
Ensembl
RGD
PMID:11517919 GO_REF:0000107, MGI:5142377 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
ISS
GO_REF:0000107
(MGI:5142377|PMID:11517919)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11517919 GO_REF:0000024, GO_REF:0000107, MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein, axonemal, heavy chain 11 ISO MGI:1856917 (MGI:3785303|PMID:18414654) RGD PMID:18414654 MGI:3785303 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
G Zic3 Zic family member 3 ISO (MGI:2178095|PMID:11959836) RGD PMID:11959836 MGI:2178095 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 IEA
ISO
GO_REF:0000107
MGI:1931734 (MGI:3522525|PMID:15531373)
Ensembl
RGD
PMID:15531373 GO_REF:0000107, MGI:3522525 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr1c activin A receptor type 1C NOT ISO MGI:3512292 (MGI:3511374|PMID:15485907) RGD PMID:15485907 MGI:3511374 NCBI chr 3:44,272,859...44,342,501
Ensembl chr 3:44,270,653...44,342,355
JBrowse link
G Acvr2a activin A receptor type 2A IEA
ISO
GO_REF:0000107
MGI:87912 (MGI:3689276|PMID:16991118)
Ensembl
RGD
PMID:16991118 GO_REF:0000107, MGI:3689276 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B IEA
ISO
GO_REF:0000107
MGI:102806|MGI:1857709 (MGI:3689276|PMID:16991118), (MGI:894948|PMID:9242489)
Ensembl
RGD
PMID:9242489, PMID:16991118 GO_REF:0000107, MGI:3689276, MGI:894948 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase ISO MGI:3578146 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 2:143,932,242...143,946,472
Ensembl chr 2:143,932,739...143,946,466
JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 5:62,642,974...62,684,387
Ensembl chr 5:62,640,645...62,683,964
JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 IEA
ISO
GO_REF:0000107
(MGI:5644076|PMID:25807483)
Ensembl
RGD
PMID:25807483 GO_REF:0000107, MGI:5644076 NCBI chr14:85,230,652...85,281,806
Ensembl chr14:85,230,648...85,281,803
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:3578151 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Bicc1 BicC family RNA binding protein 1 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr20:18,780,605...18,940,429
Ensembl chr20:18,780,605...18,940,408
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO MGI:5708063 (MGI:5644076|PMID:25807483), (MGI:5696765|PMID:24947469) RGD PMID:24947469, PMID:25807483 MGI:5644076, MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Ccdc103 coiled-coil domain containing 103 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO MGI:5316786 (MGI:5644076|PMID:25807483), (MGI:6161988|PMID:28289722) RGD PMID:25807483, PMID:28289722 MGI:5644076, MGI:6161988 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO MGI:97359 (MGI:5914406|PMID:28182636) RGD PMID:28182636 MGI:5914406 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cfap53 cilia and flagella associated protein 53 ISO (PMID:26531781) RGD PMID:26531781 NCBI chr18:70,263,290...70,330,420
Ensembl chr18:70,263,359...70,329,907
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO
IBA
MGI:2179530 (MGI:1346729|PMID:10521397), (MGI:5644076|PMID:25807483)
PMID:21873635
RGD PMID:10521397, PMID:25807483, PMID:21873635 MGI:1346729, MGI:5644076, RGD:13792537 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISS
ISO
GO_REF:0000024
(MGI:3574743|PMID:15750185)
UniProt
RGD
PMID:15750185 GO_REF:0000024, MGI:3574743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Daam2 dishevelled associated activator of morphogenesis 2 ISO MGI:4841108 (MGI:5543845|PMID:24091014) RGD PMID:24091014 MGI:5543845 NCBI chr 9:13,444,883...13,493,154
Ensembl chr 9:13,446,896...13,490,669
JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 ISO MGI:3056132|MGI:97359 (MGI:3055649|PMID:15466485) RGD PMID:15466485 MGI:3055649 NCBI chr19:25,929,704...25,937,852
Ensembl chr19:25,930,601...25,936,026
JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 ISO MGI:5431501 (MGI:5644076|PMID:25807483), (MGI:6161988|PMID:28289722) RGD PMID:25807483, PMID:28289722 MGI:5644076, MGI:6161988 NCBI chr 9:88,964,530...89,001,568
Ensembl chr 9:88,964,525...89,001,567
JBrowse link
G Disp1 dispatched RND transporter family member 1 ISO MGI:2429759|MGI:2448055 (MGI:2389012|PMID:12421714), (MGI:3577662|PMID:15755804) RGD PMID:12421714, PMID:15755804 MGI:2389012, MGI:3577662 NCBI chr13:101,451,932...101,597,570
Ensembl chr13:101,451,932...101,597,570
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO MGI:1861919 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dnaaf3 dynein, axonemal, assembly factor 3 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 1:72,874,131...72,882,867
Ensembl chr 1:72,874,404...72,883,002
JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 ISO
IBA
ISS
(PMID:23872636)
PMID:21873635
(MGI:5544549|PMID:23872636), (MGI:5644076|PMID:25807483)
GO_REF:0000024
RGD
UniProt
PMID:23872636, PMID:25807483, PMID:21873635 GO_REF:0000024, MGI:5544549, MGI:5644076, RGD:13792537 NCBI chr 8:79,637,678...79,651,892
Ensembl chr 8:79,638,696...79,651,884
JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 ISO (PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)
MGI:1856917|MGI:2152963|MGI:4821828 (MGI:1099344|PMID:9353118), (MGI:1347236|PMID:10556073), (MGI:5644076|PMID:25807483), (MGI:5811184|PMID:27340223)
RGD PMID:9353118, PMID:10556073, PMID:12142464, PMID:18022865, PMID:22184204, PMID:22499950, PMID:25807483, PMID:27340223 MGI:1099344, MGI:1347236, MGI:48750, MGI:5644076, MGI:5811184 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 ISO (PMID:11788826), (PMID:17515466), (PMID:22499950)
MGI:2180081|MGI:5285078 (MGI:2178772|PMID:11912187), (MGI:5644076|PMID:25807483), (MGI:6161988|PMID:28289722)
RGD PMID:11788826, PMID:11912187, PMID:17515466, PMID:22499950, PMID:25807483, PMID:28289722 MGI:2178772, MGI:5644076, MGI:6161988 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447
JBrowse link
G Dnai1 dynein, axonemal, intermediate chain 1 ISO (PMID:11231901), (PMID:17515466), (PMID:22499950)
(MGI:5644076|PMID:25807483)
RGD PMID:11231901, PMID:17515466, PMID:22499950, PMID:25807483 MGI:5644076 NCBI chr 5:57,947,796...58,017,985
Ensembl chr 5:57,947,716...58,017,992
JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 ISO (PMID:18950741) RGD PMID:18950741 NCBI chr10:103,266,343...103,301,521
Ensembl chr10:103,266,296...103,301,544
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia ISO MGI:4262238 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860
JBrowse link
G Drc1 dynein regulatory complex subunit 1 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 6:27,425,237...27,460,038
Ensembl chr 6:27,425,235...27,460,038
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 IEA
ISO
GO_REF:0000107
MGI:3578144 (MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793), (MGI:3610248|PMID:16229832), (MGI:5644076|PMID:25807483)
Ensembl
RGD
PMID:15755804, PMID:16061793, PMID:16229832, PMID:25807483 GO_REF:0000107, MGI:3577662, MGI:3588600, MGI:3610248, MGI:5644076 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO MGI:3505858 (MGI:3487175|PMID:15371312) RGD PMID:15371312 MGI:3487175 NCBI chr 6:7,900,962...7,933,795
Ensembl chr 6:7,900,972...7,933,796
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3056270|PMID:15329346) RGD PMID:15329346 MGI:3056270 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:1857843 (MGI:1340887|PMID:10411502) RGD PMID:10411502 MGI:1340887 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Foxf1 forkhead box F1 ISO (MGI:2135612|PMID:11493558) RGD PMID:11493558 MGI:2135612 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxh1 forkhead box H1 ISO MGI:2387775 (MGI:2652200|PMID:12642485) RGD PMID:12642485 MGI:2652200 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Foxj1 forkhead box J1 ISS
ISO
GO_REF:0000024
(MGI:5644076|PMID:25807483)
(PMID:31630787)
UniProt
RGD
PMID:25807483, PMID:31630787 GO_REF:0000024, MGI:5644076 NCBI chr10:105,282,090...105,289,396 JBrowse link
G Galnt11 polypeptide N-acetylgalactosaminyltransferase 11 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:6,297,255...6,330,765
Ensembl chr 4:6,297,258...6,330,765
JBrowse link
G Gas8 growth arrest specific 8 ISO MGI:3870680 (MGI:5789455|PMID:27472056) RGD PMID:27472056 MGI:5789455 NCBI chr19:56,316,367...56,335,873
Ensembl chr19:56,316,268...56,335,870
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift74 intraflagellar transport 74 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 5:113,579,065...113,682,485
Ensembl chr 5:113,592,919...113,682,484
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:1859153|MGI:3027342 (MGI:1855904|PMID:10804177), (MGI:3577662|PMID:15755804) RGD PMID:10804177, PMID:15755804 MGI:1855904, MGI:3577662 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:1861960|MGI:3580660 (MGI:1336552|PMID:10220415), (MGI:3577662|PMID:15755804) RGD PMID:10220415, PMID:15755804 MGI:1336552, MGI:3577662 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lefty1 left right determination factor 1 ISO (MGI:1277589|PMID:9708732) RGD PMID:9708732 MGI:1277589 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G LOC691354 hypothetical protein LOC691354 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 5:165,464,832...165,491,375
Ensembl chr 5:165,465,095...165,481,914
JBrowse link
G Megf8 multiple EGF-like-domains 8 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IEA
ISO
GO_REF:0000107
MGI:4410614|MGI:4887578 (MGI:4367169|PMID:19776033), (MGI:4868517|PMID:21045211)
Ensembl
RGD
PMID:19776033, PMID:21045211 GO_REF:0000107, MGI:4367169, MGI:4868517 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Mmp21 matrix metallopeptidase 21 ISO (PMID:26429889), (PMID:26437028)
(MGI:5644076|PMID:25807483), (MGI:5700258|PMID:26437028)
RGD PMID:25807483, PMID:26429889, PMID:26437028 MGI:5644076, MGI:5700258 NCBI chr 1:205,745,119...205,750,786
Ensembl chr 1:205,745,119...205,750,786
JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 IEA
ISO
GO_REF:0000107
(MGI:5644076|PMID:25807483)
Ensembl
RGD
PMID:25807483 GO_REF:0000107, MGI:5644076 NCBI chr 4:117,506,731...117,531,480
Ensembl chr 4:117,506,732...117,531,480
JBrowse link
G Nek8 NIMA-related kinase 8 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr10:65,404,489...65,439,059
Ensembl chr10:65,425,771...65,437,143
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:1931319 (MGI:3056270|PMID:15329346) RGD PMID:15329346 MGI:3056270 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Nme7 NME/NM23 family member 7 ISO MGI:4151115 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:106676|MGI:1344365|MGI:2158732|MGI:2180793|MGI:2388004|MGI:2443893 (MGI:2155575|PMID:11311163), (MGI:2387223|PMID:12231623), (MGI:2652200|PMID:12642485), (MGI:2654412|PMID:12654299), (MGI:3055649|PMID:15466485), (MGI:3624254|PMID:16496285), (MGI:5914406|PMID:28182636) RGD PMID:11311163, PMID:12231623, PMID:12642485, PMID:12654299, PMID:15466485, PMID:16496285, PMID:28182636 MGI:2155575, MGI:2387223, MGI:2652200, MGI:2654412, MGI:3055649, MGI:3624254, MGI:5914406 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1857230|MGI:1857877 (MGI:2661305|PMID:12730124), (MGI:72973|PMID:7789282) RGD PMID:7789282, PMID:12730124 MGI:2661305, MGI:72973 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch2 notch receptor 2 ISO MGI:1933205 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Noto notochord homeobox ISO MGI:3053092 (MGI:5014029|PMID:20350929), (MGI:5316531|PMID:22357932), (MGI:5646191|PMID:17884984) RGD PMID:17884984, PMID:20350929, PMID:22357932 MGI:5014029, MGI:5316531, MGI:5646191 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Nphp3 nephrocystin 3 ISO (PMID:18371931)
(MGI:3807620|PMID:18371931)
RGD PMID:18371931 MGI:3807620 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 ISO (PMID:23849778)
MGI:5311373 (MGI:5551687|PMID:23849778), (MGI:5644076|PMID:25807483)
RGD PMID:23849778, PMID:25807483 MGI:5551687, MGI:5644076 NCBI chr17:60,283,926...60,474,289
Ensembl chr17:60,287,203...60,474,031
JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 ISO (PMID:25192045)
(MGI:5644076|PMID:25807483)
RGD PMID:25192045, PMID:25807483 MGI:5644076 NCBI chr 8:23,000,912...23,014,707
Ensembl chr 8:23,000,872...23,014,499
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 IEA
ISO
GO_REF:0000107
MGI:97359 (MGI:1858546|PMID:10809672)
Ensembl
RGD
PMID:10809672 GO_REF:0000107, MGI:1858546 NCBI chr 1:126,749,508...126,947,392
Ensembl chr 1:126,749,508...126,947,392
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:1857844|MGI:1857846|MGI:1857880|MGI:2136268|MGI:2384494|MGI:2445428 (MGI:1277589|PMID:9708732), (MGI:1344731|PMID:10498698), (MGI:1345532|PMID:10499586), (MGI:1347482|PMID:10572050), (MGI:2135655|PMID:11493526), (MGI:2389284|PMID:12397115), (MGI:5543845|PMID:24091014) RGD PMID:9708732, PMID:10498698, PMID:10499586, PMID:10572050, PMID:11493526, PMID:12397115, PMID:24091014 MGI:1277589, MGI:1344731, MGI:1345532, MGI:1347482, MGI:2135655, MGI:2389284, MGI:5543845 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr14:89,047,949...89,193,579
Ensembl chr14:89,060,447...89,179,507
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO MGI:2676373 (MGI:2181535|PMID:12062060) RGD PMID:12062060 MGI:2181535 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Pskh1 protein serine kinase H1 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr19:37,873,515...37,905,625
Ensembl chr19:37,873,515...37,905,625
JBrowse link
G Rfx3 regulatory factor X3 ISO MGI:3045792 (MGI:3041887|PMID:15121860) RGD PMID:15121860 MGI:3041887 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link
G RGD1306233 similar to hypothetical protein MGC29761 ISO MGI:4133392 (MGI:6102515|PMID:27305836) RGD PMID:27305836 MGI:6102515 NCBI chr 3:7,047,603...7,051,953
Ensembl chr 3:7,047,603...7,051,953
JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:3513254 (MGI:3715395|PMID:17531978) RGD PMID:17531978 MGI:3715395 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:3716208 (MGI:3715393|PMID:17553904) RGD PMID:17553904 MGI:3715393 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Rttn rotatin ISO MGI:2674124 (MGI:2178890|PMID:11900971) RGD PMID:11900971 MGI:2178890 NCBI chr18:86,071,884...86,247,486
Ensembl chr18:86,071,662...86,247,486
JBrowse link
G Shh sonic hedgehog signaling molecule ISO MGI:1857796 (MGI:1339521|PMID:10385121), (MGI:1340887|PMID:10411502), (MGI:1346236|PMID:10500184) RGD PMID:10385121, PMID:10411502, PMID:10500184 MGI:1339521, MGI:1340887, MGI:1346236 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor ISO MGI:2137553|MGI:2176255 (MGI:2389012|PMID:12421714), (MGI:3577662|PMID:15755804) RGD PMID:12421714, PMID:15755804 MGI:2389012, MGI:3577662 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:3621085|PMID:16556915)
UniProt
RGD
PMID:16556915 GO_REF:0000024, MGI:3621085 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:3652354 (MGI:3629366|PMID:16705179) RGD PMID:16705179 MGI:3629366 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tmem107 transmembrane protein 107 ISO MGI:5007367 (MGI:6405644|PMID:31887266) RGD PMID:31887266 MGI:6405644 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
G Tmem67 transmembrane protein 67 ISO (MGI:5644076|PMID:25807483) RGD PMID:25807483 MGI:5644076 NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:3611726|PMID:16291790) RGD PMID:16291790 MGI:3611726 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:1857617 (MGI:5543845|PMID:24091014) RGD PMID:24091014 MGI:5543845 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (MGI:3056222|PMID:15384171), (MGI:3624254|PMID:16496285)
RGD PMID:9354794, PMID:15384171, PMID:16496285 MGI:3056222, MGI:3624254 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 ISO
IEA
(PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Nphp3 nephrocystin 3 ISO (PMID:20007846) RGD PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 ISO
IEA
(PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Nphp3 nephrocystin 3 ISO (PMID:20007846) RGD PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:101,698,096...101,724,928
Ensembl chr13:101,698,096...101,724,923
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO (MGI:1337175|PMID:10330403) RGD PMID:10330403 MGI:1337175
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2181295 (MGI:2670493|PMID:12923052) RGD PMID:12923052 MGI:2670493 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:2148594|MGI:2158470 (MGI:2670493|PMID:12923052)
Ensembl
RGD
PMID:12923052 GO_REF:0000107, MGI:2670493 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:2156191 (MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mdfi MyoD family inhibitor ISO (MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:4441142 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1934347 (MGI:1350715|PMID:10588713)
Ensembl
RGD
PMID:10588713 GO_REF:0000107, MGI:1350715 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:82,627,973...82,664,702
Ensembl chr11:82,630,436...82,664,630
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:2159246|MGI:2388160 (MGI:2157789|PMID:11830578), (MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:11830578, PMID:11830579 GO_REF:0000107, MGI:2157789, MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:2450902|MGI:2450903 (MGI:2450015|PMID:12569130) RGD PMID:12569130 MGI:2450015 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(MGI:3046395|PMID:15218525)
Ensembl
RGD
PMID:15218525 GO_REF:0000107, MGI:3046395 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (MGI:3774974|PMID:18003640), (MGI:3806189|PMID:18590716) RGD PMID:18003640, PMID:18590716 MGI:3774974, MGI:3806189 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa1 forkhead box A1 IEA
ISO
GO_REF:0000107
MGI:1347476 (MGI:5486225|PMID:23383217)
Ensembl
RGD
PMID:23383217 GO_REF:0000107, MGI:5486225 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:1347472|MGI:95841 (MGI:3806189|PMID:18590716), (MGI:5486225|PMID:23383217), (MGI:894511|PMID:9226455) RGD PMID:9226455, PMID:18590716, PMID:23383217 MGI:3806189, MGI:5486225, MGI:894511 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) RGD PMID:17504940, PMID:17504941 MGI:3710451, MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:894564|PMID:9247260) RGD PMID:9247260, PMID:18590716, PMID:19286674 MGI:3806189, MGI:3841503, MGI:894564 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gsc goosecoid homeobox ISO MGI:1347476 (MGI:894511|PMID:9226455) RGD PMID:9226455 MGI:894511 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:1341070|MGI:1861960|MGI:95728 (MGI:3806189|PMID:18590716), (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331) RGD PMID:18590716, PMID:19286674, PMID:21209331 MGI:3806189, MGI:3841503, MGI:4888042 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Pax7 paired box 7 ISO (MGI:3806189|PMID:18590716) RGD PMID:18590716 MGI:3806189 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Psen1 presenilin 1 ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO MGI:1202717 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Ptch1 patched 1 ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO (MGI:69552|PMID:7720556) RGD PMID:7720556 MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:95655 (MGI:3710017|PMID:17442700), (MGI:3710451|PMID:17504941), (MGI:3806189|PMID:18590716), (MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:17442700, PMID:17504941, PMID:18590716, PMID:21209331 GO_REF:0000107, MGI:3710017, MGI:3710451, MGI:3806189, MGI:4888042 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176255 (MGI:3806189|PMID:18590716)
Ensembl
RGD
PMID:18590716 GO_REF:0000107, MGI:3806189 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:64780|PMID:8299937) RGD PMID:8299937 MGI:64780 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvrl1 activin A receptor like type 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO MGI:2449944 (MGI:2449253|PMID:12645927) RGD PMID:12645927 MGI:2449253 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:3578151 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Axin1 axin 1 ISO MGI:1856035 (MGI:3797993|PMID:18316368) RGD PMID:18316368 MGI:3797993
G Bmpr1a bone morphogenetic protein receptor type 1A ISO
IBA
MGI:107191 (MGI:3574003|PMID:15673568)
PMID:21873635
RGD PMID:15673568, PMID:21873635 MGI:3574003, RGD:13792537 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO
IBA
MGI:1338938 (MGI:3574003|PMID:15673568)
PMID:21873635
RGD PMID:15673568, PMID:21873635 MGI:3574003, RGD:13792537 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Chrd chordin ISO MGI:2157350 (MGI:2662951|PMID:12810603) RGD PMID:12810603 MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Ctnnb1 catenin beta 1 ISO MGI:2148567|MGI:2176173 (MGI:3529734|PMID:15708565) RGD PMID:15708565 MGI:3529734 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Disp1 dispatched RND transporter family member 1 ISO MGI:2448055|MGI:98297 (MGI:3051703|PMID:15269168), (MGI:3577662|PMID:15755804) RGD PMID:15269168, PMID:15755804 MGI:3051703, MGI:3577662 NCBI chr13:101,451,932...101,597,570
Ensembl chr13:101,451,932...101,597,570
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 IEA
ISO
GO_REF:0000107
MGI:105373|MGI:3578144|MGI:95729|MGI:98297 (MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793), (MGI:3610248|PMID:16229832), (MGI:5441704|PMID:21552265)
Ensembl
RGD
PMID:15755804, PMID:16061793, PMID:16229832, PMID:21552265 GO_REF:0000107, MGI:3577662, MGI:3588600, MGI:3610248, MGI:5441704 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:3043904|PMID:15110048) RGD PMID:15110048 MGI:3043904 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G En1 engrailed homeobox 1 ISO MGI:1857163 (MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) RGD PMID:8684466, PMID:9362463 MGI:1194987, MGI:81767 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:266,075,782...266,078,023
Ensembl chr 1:266,075,782...266,078,023
JBrowse link
G Fgf8 fibroblast growth factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:3042750 (MGI:3039989|PMID:15105374) RGD PMID:15105374 MGI:3039989 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:99783 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Foxg1 forkhead box G1 ISO MGI:1857771|MGI:1932522 (MGI:2679162|PMID:14566948), (MGI:3581994|PMID:15893304) RGD PMID:14566948, PMID:15893304 MGI:2679162, MGI:3581994 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070 (MGI:3710452|PMID:17504940) RGD PMID:17504940 MGI:3710452 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gli1 GLI family zinc finger 1 ISO MGI:95728 (MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:3617688 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:95727 (MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:3617688 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856275|MGI:1856276 (MGI:2445272|PMID:12435629), (MGI:3028732|PMID:14723851), (MGI:3624182|PMID:16571630) RGD PMID:12435629, PMID:14723851, PMID:16571630 MGI:2445272, MGI:3028732, MGI:3624182 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hhip Hedgehog-interacting protein ISO MGI:105373 (MGI:3511726|PMID:15576403) RGD PMID:15576403 MGI:3511726 NCBI chr19:31,525,134...31,614,487
Ensembl chr19:31,524,671...31,614,246
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96203 (MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:2135652 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:1857626|MGI:96183 (MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:1335668 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Hoxb2 homeobox B2 ISO MGI:96174 (MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:1335668 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172 (MGI:2135652|PMID:11493536) RGD PMID:11493536 MGI:2135652 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:3578529|MGI:98297 (MGI:3577662|PMID:15755804), (MGI:5441704|PMID:21552265) RGD PMID:15755804, PMID:21552265 MGI:3577662, MGI:5441704 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:108075|MGI:2682066 (MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:3588600|PMID:16061793), (MGI:5441704|PMID:21552265) RGD PMID:14603322, PMID:15755804, PMID:16061793, PMID:21552265 MGI:2679893, MGI:3577662, MGI:3588600, MGI:5441704 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:3027342 (MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098) RGD PMID:15755804, PMID:15930098 MGI:3577662, MGI:3579954 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:3580660 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:1347476 (MGI:1344734|PMID:10498685)
UniProt
RGD
PMID:10498685 GO_REF:0000024, MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx2 LIM homeobox 2 ISO MGI:1890208 (MGI:1930361|PMID:11165475), (MGI:2679162|PMID:14566948) RGD PMID:11165475, PMID:14566948 MGI:1930361, MGI:2679162 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:2385819 (MGI:3771226|PMID:18037398) RGD PMID:18037398 MGI:3771226 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO (PMID:10767331) RGD PMID:10767331 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Lrp4 LDL receptor related protein 4 ISO MGI:3621893|MGI:3707955 (MGI:3619629|PMID:16207730), (MGI:3703100|PMID:17119023) RGD PMID:16207730, PMID:17119023 MGI:3619629, MGI:3703100 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Nog noggin ISO
IBA
IEA
(PMID:7666191)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:7666191, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Noto notochord homeobox ISO MGI:1857063 (MGI:64560|PMID:8155581) RGD PMID:8155581 MGI:64560 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:2661067 (MGI:2656991|PMID:12652306) RGD PMID:12652306 MGI:2656991 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pax6 paired box 6 ISO MGI:1856155|MGI:2156741|MGI:3521718 (MGI:3512833|PMID:15548580), (MGI:3581509|PMID:15878992) RGD PMID:15548580, PMID:15878992 MGI:3512833, MGI:3581509 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Prop1 PROP paired-like homeobox 1 ISO
IBA
MGI:1856842|MGI:3521736 (MGI:2389279|PMID:12183375), (MGI:3512715|PMID:15459176)
PMID:21873635
RGD PMID:12183375, PMID:15459176, PMID:21873635 MGI:2389279, MGI:3512715, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Ptch1 patched 1 ISS
ISO
GO_REF:0000024
MGI:1341847 (MGI:3511726|PMID:15576403)
UniProt
RGD
PMID:15576403 GO_REF:0000024, MGI:3511726 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Shh sonic hedgehog signaling molecule ISS
ISO
GO_REF:0000024
MGI:1916147|MGI:1932386 (MGI:3051703|PMID:15269168), (MGI:5441704|PMID:21552265)
UniProt
RGD
PMID:15269168, PMID:21552265 GO_REF:0000024, MGI:3051703, MGI:5441704 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor ISO MGI:2137553|MGI:2176173|MGI:2176256 (MGI:3577662|PMID:15755804), (MGI:3624182|PMID:16571630) RGD PMID:15755804, PMID:16571630 MGI:3577662, MGI:3624182 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sp8 Sp8 transcription factor ISO MGI:2684137 (MGI:2679409|PMID:14597661) RGD PMID:14597661 MGI:2679409 NCBI chr 6:146,784,915...146,789,439
Ensembl chr 6:146,784,915...146,787,518
JBrowse link
G Tbx20 T-box transcription factor 20 ISO MGI:3580099 (MGI:3579960|PMID:15901664) RGD PMID:15901664 MGI:3579960 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:3698004 (MGI:3697552|PMID:17082251) RGD PMID:17082251 MGI:3697552 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Wnt7a Wnt family member 7A ISO MGI:1857704 (MGI:1194987|PMID:9362463), (MGI:71658|PMID:7885472) RGD PMID:7885472, PMID:9362463 MGI:1194987, MGI:71658 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Cobl cordon-bleu WH2 repeat protein ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:894149|PMID:9230313)
Ensembl
RGD
PMID:9230313 GO_REF:0000107, MGI:894149 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:261,071,965...261,075,244 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Peg12 paternally expressed 12 ISO (MGI:1349209|PMID:10534617) RGD PMID:10534617 MGI:1349209 NCBI chr 1:123,097,861...123,100,464
Ensembl chr 1:123,097,861...123,100,464
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Wnt1 Wnt family member 1 ISO (MGI:4822553|PMID:2534596) RGD PMID:2534596 MGI:4822553 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Wnt7a Wnt family member 7A ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IEA
ISO
GO_REF:0000107
MGI:3583785 (MGI:3611958|PMID:16314491)
Ensembl
RGD
PMID:16314491 GO_REF:0000107, MGI:3611958 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Foxh1 forkhead box H1 ISO MGI:2179442 (MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:2386265 (MGI:87488|PMID:9136932) RGD PMID:9136932 MGI:87488 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Invs inversin ISO MGI:1856915 (MGI:892786|PMID:9192865) RGD PMID:9192865 MGI:892786 NCBI chr 5:64,031,131...64,180,830
Ensembl chr 5:64,053,946...64,178,759
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
ISS
GO_REF:0000107
(MGI:5551355|PMID:24052814)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24052814 GO_REF:0000024, GO_REF:0000107, MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
MGI:1927227 (MGI:892786|PMID:9192865)
Ensembl
RGD
PMID:9192865 GO_REF:0000107, MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Pifo primary cilia formation ISO MGI:4819764 (MGI:4819432|PMID:20643351) RGD PMID:20643351 MGI:4819432 NCBI chr 2:208,616,592...208,633,961
Ensembl chr 2:208,616,589...208,633,945
JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07050543.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:168,845,058...168,845,415 JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Disp1 dispatched RND transporter family member 1 ISO MGI:2672101 (MGI:2388245|PMID:12372301) RGD PMID:12372301 MGI:2388245 NCBI chr13:101,451,932...101,597,570
Ensembl chr13:101,451,932...101,597,570
JBrowse link
G Efnb1 ephrin B1 IEA
ISO
GO_REF:0000107
MGI:3039289 (MGI:3037600|PMID:15037550)
Ensembl
RGD
PMID:15037550 GO_REF:0000107, MGI:3037600 NCBI chr  X:68,891,227...68,904,034
Ensembl chr  X:68,891,227...68,904,038
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IEA
ISO
ISS
GO_REF:0000107
(MGI:1352955|PMID:10655590)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:10655590 GO_REF:0000024, GO_REF:0000107, MGI:1352955 NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1927833|MGI:3629660 (MGI:3714586|PMID:17522155), (MGI:3722952|PMID:16618415) RGD PMID:16618415, PMID:17522155 MGI:3714586, MGI:3722952 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153811 (MGI:3722952|PMID:16618415) RGD PMID:16618415 MGI:3722952 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:97449 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024, MGI:1346311 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:4415718 (MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:19653321, PMID:21873635 MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Meis1 Meis homeobox 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:103,182,178...103,321,809
Ensembl chr14:103,181,281...103,321,270
JBrowse link
G Meis2 Meis homeobox 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:107,560,172...107,762,732
Ensembl chr 3:107,559,997...107,760,589
JBrowse link
G Meis3 Meis homeobox 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,065,617...78,079,698
Ensembl chr 1:78,068,931...78,079,862
JBrowse link
G Nanog Nanog homeobox ISO (PMID:15108323) RGD PMID:15108323 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Noto notochord homeobox ISO MGI:1857063 (MGI:3587655|PMID:15550757) RGD PMID:15550757 MGI:3587655 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Ooep oocyte expressed protein ISO (MGI:3775875|PMID:18191828) RGD PMID:18191828 MGI:3775875 NCBI chr 8:85,719,447...85,720,806
Ensembl chr 8:85,719,496...85,720,790
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:61,066,170...61,134,963
Ensembl chr 9:61,066,175...61,134,963
JBrowse link
G Ripply1 ripply transcriptional repressor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:111,099,420...111,114,835
Ensembl chr  X:111,099,930...111,102,464
JBrowse link
G Ripply2 ripply transcriptional repressor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:34,557,679...34,565,776
Ensembl chr11:34,557,679...34,565,776
JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:3692768 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Sim2 SIM bHLH transcription factor 2 ISO MGI:2180881 (MGI:2180275|PMID:12024028) RGD PMID:12024028 MGI:2180275 NCBI chr11:34,315,739...34,355,183
Ensembl chr11:34,316,295...34,354,027
JBrowse link
G Smad1 SMAD family member 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad5 SMAD family member 5 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:3769332 (MGI:3768270|PMID:17984226) RGD PMID:17984226 MGI:3768270 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO MGI:2182708 (MGI:1859075|PMID:10835630) RGD PMID:10835630 MGI:1859075 NCBI chr 8:52,980,226...53,146,765
Ensembl chr 8:52,985,313...53,146,953
JBrowse link
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030901.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,387,789...108,393,442 JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO
IBA
ISS
(PMID:21131972)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21131972, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO
IBA
(PMID:21131974)
PMID:21873635
(MGI:4936771|PMID:21131974)
RGD PMID:21131974, PMID:21873635 MGI:4936771, RGD:13792537 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 ISO MGI:1856917 (MGI:3629280|PMID:10549278), (MGI:5913669|PMID:22102620) RGD PMID:10549278, PMID:22102620 MGI:3629280, MGI:5913669 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
G Invs inversin ISO MGI:1856915 (MGI:3629280|PMID:10549278) RGD PMID:10549278 MGI:3629280 NCBI chr 5:64,031,131...64,180,830
Ensembl chr 5:64,053,946...64,178,759
JBrowse link
G Lrrc6 leucine rich repeat containing 6 ISO (PMID:23122589)
MGI:6147714 (MGI:6147712|PMID:27353389)
RGD PMID:23122589, PMID:27353389 MGI:6147712 NCBI chr 7:107,130,402...107,231,507
Ensembl chr 7:107,130,402...107,223,047
JBrowse link
G Megf8 multiple EGF-like-domains 8 NOT ISO MGI:3722325 (MGI:3839019|PMID:18043505) RGD PMID:18043505 MGI:3839019 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 ISO MGI:5548687 (MGI:6360364|PMID:31383820) RGD PMID:31383820 MGI:6360364 NCBI chr 8:23,000,912...23,014,707
Ensembl chr 8:23,000,872...23,014,499
JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 ISO (PMID:27486780)
MGI:6110171 (MGI:5913140|PMID:27486780)
RGD PMID:27486780 MGI:5913140 NCBI chr10:88,459,490...88,488,237
Ensembl chr10:88,459,490...88,488,237
JBrowse link
G Ofd1 OFD1, centriole and centriolar satellite protein ISO (MGI:3617259|PMID:16311594) RGD PMID:16311594 MGI:3617259 NCBI chr  X:29,562,165...29,602,934
Ensembl chr  X:29,562,165...29,602,925
JBrowse link
G Rfx3 regulatory factor X3 ISO (MGI:3041887|PMID:15121860) RGD PMID:15121860 MGI:3041887 NCBI chr 1:245,853,332...246,110,648
Ensembl chr 1:245,859,633...246,110,218
JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 ISO (PMID:14520415) RGD PMID:14520415 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 IEP RGD PMID:10882515 RGD:1582291 NCBI chr 1:32,634,774...32,645,151
Ensembl chr 1:32,634,796...32,643,771
JBrowse link
G Wnt8a Wnt family member 8A ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829
JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 ISO MGI:5056368 (MGI:6111002|PMID:29317443) RGD PMID:29317443 MGI:6111002 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 ISO MGI:5526981|MGI:5532530 (MGI:5514194|PMID:23525783), (MGI:6358908|PMID:31107948) RGD PMID:23525783, PMID:31107948 MGI:5514194, MGI:6358908 NCBI chr 6:91,481,439...91,490,189
Ensembl chr 6:91,481,954...91,490,366
JBrowse link
G Enkur enkurin, TRPC channel interacting protein ISO (PMID:29257953)
MGI:6156078 (MGI:6110984|PMID:29257953)
RGD PMID:29257953 MGI:6110984 NCBI chr17:88,071,794...88,095,444
Ensembl chr17:88,071,757...88,095,729
JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO
IBA
(PMID:11923311)
PMID:21873635
MGI:1859647 (MGI:3629001|PMID:16720875)
RGD PMID:11923311, PMID:16720875, PMID:21873635 MGI:3629001, RGD:13792537 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153811 (MGI:3629001|PMID:16720875) RGD PMID:16720875 MGI:3629001 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin ISO
IEA
(PMID:8582276)
GO_REF:0000107
RGD
Ensembl
PMID:8582276 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 ISO MGI:1859823 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr 4:50,309,281...50,312,608
Ensembl chr 4:50,309,281...50,312,608
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO MGI:1920441 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:2450901|MGI:98953 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:102764 (MGI:3772426|PMID:18094027) RGD PMID:18094027 MGI:3772426 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:1857843|MGI:2150348 (MGI:3624179|PMID:16613831) RGD PMID:16613831 MGI:3624179 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:1352305|PMID:10625551) RGD PMID:10625551 MGI:1352305 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:2150162 (MGI:1926244|PMID:11060228), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439) RGD PMID:11060228, PMID:11124115, PMID:18701439 MGI:1926244, MGI:1928687, MGI:3838261 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1857494 (MGI:1339462|PMID:10393115), (MGI:1928567|PMID:11163262), (MGI:2157787|PMID:11830575)
Ensembl
RGD
PMID:10393115, PMID:11163262, PMID:11830575 GO_REF:0000107, MGI:1339462, MGI:1928567, MGI:2157787 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1856158 (MGI:1913185|PMID:11050125), (MGI:1928687|PMID:11124115), (MGI:3838261|PMID:18701439), (MGI:5662366|PMID:24528677)
Ensembl
RGD
PMID:11050125, PMID:11124115, PMID:18701439, PMID:24528677 GO_REF:0000107, MGI:1913185, MGI:1928687, MGI:3838261, MGI:5662366 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Six3 SIX homeobox 3 ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B ISO MGI:2152544 (MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:4367927 NCBI chr 3:52,286,794...52,361,060
Ensembl chr 3:52,286,794...52,361,060
JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:97449 (MGI:1346311|PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024, MGI:1346311 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 ISO MGI:1856621|MGI:99783 (MGI:1346311|PMID:10529425) RGD PMID:10529425 MGI:1346311 NCBI chr 9:61,066,170...61,134,963
Ensembl chr 9:61,066,175...61,134,963
JBrowse link
G Shh sonic hedgehog signaling molecule ISO MGI:3775846|MGI:3840448 (MGI:5662366|PMID:24528677) RGD PMID:24528677 MGI:5662366 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Wnt2b Wnt family member 2B ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 2:207,433,771...207,457,094
Ensembl chr 2:207,440,886...207,455,258
JBrowse link
G Wnt7b Wnt family member 7B ISO (PMID:15164427) RGD PMID:15164427 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1856158 (MGI:892757|PMID:9169845)
Ensembl
RGD
PMID:9169845 GO_REF:0000107, MGI:892757 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:50,891,137...50,901,791
Ensembl chr15:50,891,127...50,903,162
JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:5907444|PMID:26295701) RGD PMID:26295701 MGI:5907444 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030901.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,387,789...108,393,442 JBrowse link
G Ahi1 Abelson helper integration site 1 ISS
ISO
GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)
UniProt
RGD
PMID:21959375 GO_REF:0000024, MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655
JBrowse link
G Ccdc103 coiled-coil domain containing 103 ISO (PMID:22581229) RGD PMID:22581229 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO
IBA
(PMID:22693285)
PMID:21873635
RGD PMID:22693285, PMID:21873635 RGD:13792537 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO MGI:2179530 (MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:1346729 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2176158 (MGI:3574743|PMID:15750185) RGD PMID:15750185 MGI:3574743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cluap1 clusterin associated protein 1 ISO MGI:5523142 (MGI:5509110|PMID:23742838) RGD PMID:23742838 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
GO_REF:0000107
(MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107, MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 IEA
ISO
GO_REF:0000107
(PMID:19944400), (PMID:19944405)
Ensembl
RGD
PMID:19944400, PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Eng endoglin ISO (MGI:1337912|PMID:10348742), (MGI:4368063|PMID:19703439) RGD PMID:10348742, PMID:19703439 MGI:1337912, MGI:4368063 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Eomes eomesodermin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:1857843 (MGI:1340887|PMID:10411502) RGD PMID:10411502 MGI:1340887 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Folr1 folate receptor alpha ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Foxh1 forkhead box H1 ISO (MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Gata4 GATA binding protein 4 ISO (MGI:3052615|PMID:15310850) RGD PMID:15310850 MGI:3052615 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:1857177 (MGI:1201220|PMID:9486664) RGD PMID:9486664 MGI:1201220 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO MGI:2153823 (MGI:1197800|PMID:9500551) RGD PMID:9500551 MGI:1197800 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEA
ISO
GO_REF:0000107
MGI:1857639 (MGI:892134|PMID:9171826)
Ensembl
RGD
PMID:9171826 GO_REF:0000107, MGI:892134 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
GO_REF:0000107
MGI:2179429 (MGI:3607736|PMID:14659802)
Ensembl
RGD
PMID:14659802 GO_REF:0000107, MGI:3607736 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:3829198 (MGI:3828200|PMID:18930042) RGD PMID:18930042 MGI:3828200 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift57 intraflagellar transport 57 ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2a lysine demethylase 2A ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Kif3a kinesin family member 3a ISO MGI:2181727 (MGI:1337724|PMID:10330409) RGD PMID:10330409 MGI:1337724 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:2386948 (MGI:3628723|PMID:12522123) RGD PMID:12522123 MGI:3628723 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISO
ISS
GO_REF:0000107
(MGI:3830899|PMID:16680724)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16680724 GO_REF:0000024, GO_REF:0000107, MGI:3830899 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:177,048,607...177,173,729
Ensembl chr 1:177,048,655...177,173,995
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
MGI:1927227 (MGI:3773736|PMID:16510504), (MGI:74918|PMID:7628699), (MGI:892786|PMID:9192865)
Ensembl
RGD
PMID:7628699, PMID:9192865, PMID:16510504 GO_REF:0000107, MGI:3773736, MGI:74918, MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:106676 (MGI:3624254|PMID:16496285) RGD PMID:16496285 MGI:3624254 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Notch1 notch receptor 1 ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch2 notch receptor 2 IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107, MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Noto notochord homeobox ISO MGI:3053092 (MGI:5646191|PMID:17884984) RGD PMID:17884984 MGI:5646191 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Nphp3 nephrocystin 3 ISO (PMID:18371931), (PMID:20007846) RGD PMID:18371931, PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3777011 (MGI:3776202|PMID:17573777) RGD PMID:17573777 MGI:3776202 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Psen1 presenilin 1 ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1340887|PMID:10411502), (MGI:1346236|PMID:10500184), (MGI:5142377|PMID:11517919)
Ensembl
RGD
PMID:10411502, PMID:10500184, PMID:11517919 GO_REF:0000107, MGI:1340887, MGI:1346236, MGI:5142377 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
ISS
GO_REF:0000107
(MGI:5142377|PMID:11517919)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11517919 GO_REF:0000024, GO_REF:0000107, MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:2179440 (MGI:3716256|PMID:17610846), (MGI:3716378|PMID:17655922) RGD PMID:17610846, PMID:17655922 MGI:3716256, MGI:3716378 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Srf serum response factor ISO MGI:2385465|MGI:2386742 (MGI:3603734|PMID:15929941) RGD PMID:15929941 MGI:3603734 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Tbr1 T-box brain transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:47,677,720...47,685,902
Ensembl chr 3:47,677,720...47,685,902
JBrowse link
G Tbx20 T-box transcription factor 20 ISO
IBA
MGI:3579849|MGI:3580099 (MGI:3578601|PMID:15843407), (MGI:3579960|PMID:15901664), (MGI:3604925|PMID:15843409)
PMID:21873635
RGD PMID:15843407, PMID:15843409, PMID:15901664, PMID:21873635 MGI:3578601, MGI:3579960, MGI:3604925, RGD:13792537 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tbx21 T-box transcription factor 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:85,032,799...85,049,331
Ensembl chr10:85,032,799...85,049,331
JBrowse link
G Tbx22 T-box transcription factor 22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,731,738...78,782,542
Ensembl chr  X:78,769,419...78,782,542
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
IBA
MGI:2655214|MGI:3769504 (MGI:3769096|PMID:17460765), (MGI:4412356|PMID:18723448)
PMID:21873635
RGD PMID:17460765, PMID:18723448, PMID:21873635 MGI:3769096, MGI:4412356, RGD:13792537 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link