Dnaaf1 (dynein, axonemal, assembly factor 1)

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Gene: Dnaaf1 (dynein, axonemal, assembly factor 1) Rattus norvegicus

Analyze

Symbol:

Dnaaf1

Name:

dynein, axonemal, assembly factor 1

RGD ID:

1310542

Description:

Predicted to enable dynein complex binding activity. Predicted to be involved in several processes, including cilium assembly; determination of left/right symmetry; and regulation of cilium beat frequency. Predicted to be located in several cellular components, including axoneme; cytosol; and nuclear speck. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 13. Orthologous to human DNAAF1 (dynein axonemal assembly factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

dynein assembly factor 1, axonemal; dynein axonemal assembly factor 1; leucine rich repeat containing 50; leucine-rich repeat-containing protein 50; LOC361419; Lrrc50; RGD1310542; similar to RIKEN cDNA 4930457P18

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DNAAF1 (dynein axonemal assembly factor 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dnaaf1 (dynein, axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dnaaf1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DNAAF1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DNAAF1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dnaaf1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DNAAF1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DNAAF1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dnaaf1 (dynein axonemal assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Dnaaf1 (dynein, axonemal assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DNAAF1 (dynein axonemal assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dnaaf1 (dynein, axonemal, assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dtr	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dnaaf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	47,624,534 - 47,652,314 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	47,624,181 - 47,652,313 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,426,330 - 54,446,664 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	55,107,213 - 55,127,282 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,320,678 - 57,340,793 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	52,217,427 - 52,245,930 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	52,217,984 - 52,245,929 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	62,966,204 - 62,994,144 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	49,821,884 - 49,842,234 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	49,826,764 - 49,847,114 (+)	NCBI
Celera	19	46,891,007 - 46,911,375 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

Kartagener syndrome (ISO)

persistent fetal circulation syndrome (ISO)

primary ciliary dyskinesia (ISO)

primary ciliary dyskinesia 13 (ISO)

situs inversus (ISO)

visceral heterotaxy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butane-2,3-dione (ISO)

C60 fullerene (EXP)

carbamazepine (ISO)

chloroprene (ISO)

choline (ISO)

cobalt dichloride (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

endosulfan (EXP)

folic acid (ISO)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

N-nitrosodiethylamine (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentane-2,3-dione (ISO)

potassium dichromate (ISO)

protein kinase inhibitor (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonemal dynein complex assembly (ISO)

axoneme assembly (IBA)

cilium assembly (IEA,ISO,ISS)

cilium movement (IEA,ISO)

determination of digestive tract left/right asymmetry (IEA,ISO)

determination of liver left/right asymmetry (IEA,ISO)

determination of pancreatic left/right asymmetry (IEA,ISO)

heart looping (IEA,ISO)

inner dynein arm assembly (IEA,ISO)

left/right pattern formation (ISO)

lung development (IEA,ISO)

motile cilium assembly (IEA,ISO)

outer dynein arm assembly (IEA,ISO)

regulation of cilium beat frequency (IEA,ISO)

Cellular Component

axoneme (IBA,IEA,ISO,ISS)

cilium (IEA)

cytosol (IEA,ISO)

nuclear speck (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

dynein complex binding (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:18385425	PMID:19944400	PMID:19944405

Genomics

Comparative Map Data

Dnaaf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	47,624,534 - 47,652,314 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	47,624,181 - 47,652,313 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,426,330 - 54,446,664 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	55,107,213 - 55,127,282 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,320,678 - 57,340,793 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	52,217,427 - 52,245,930 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	52,217,984 - 52,245,929 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	62,966,204 - 62,994,144 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	49,821,884 - 49,842,234 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	49,826,764 - 49,847,114 (+)	NCBI
Celera	19	46,891,007 - 46,911,375 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

DNAAF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	84,145,308 - 84,177,920 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	84,145,287 - 84,178,767 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	84,178,913 - 84,211,526 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	82,736,366 - 82,769,025 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	68,480,658 - 68,513,333 (+)	NCBI		Celera
Cytogenetic Map	16	q24.1	NCBI
HuRef	16	69,932,647 - 69,965,301 (+)	NCBI		HuRef
CHM1_1	16	85,590,244 - 85,622,911 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	90,211,391 - 90,243,993 (+)	NCBI		T2T-CHM13v2.0

Dnaaf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,301,974 - 120,325,193 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,301,974 - 120,325,193 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	119,575,235 - 119,598,454 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	119,575,235 - 119,598,454 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	122,099,135 - 122,122,354 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	122,461,212 - 122,484,431 (+)	NCBI		MGSCv36	mm8
Celera	8	123,792,687 - 123,815,934 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	67.98	NCBI

Dnaaf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955564	132,760 - 149,399 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955564	132,497 - 149,399 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAAF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	16	99,809,144 - 99,842,902 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	64,810,498 - 64,843,705 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	84,153,949 - 84,184,991 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	84,154,130 - 84,184,914 (+)	Ensembl	panpan1.1		panPan2

DNAAF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	68,184,532 - 68,205,651 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	68,184,532 - 68,205,656 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	68,198,602 - 68,219,645 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	68,482,202 - 68,503,551 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	68,482,202 - 68,503,557 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	68,430,068 - 68,451,328 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	68,266,559 - 68,287,805 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	68,682,282 - 68,703,584 (-)	NCBI		UU_Cfam_GSD_1.0

Dnaaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	27,903,299 - 27,920,183 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	3,657,058 - 3,673,729 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	3,656,331 - 3,674,907 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAAF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	4,457,291 - 4,479,828 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	4,457,283 - 4,483,641 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	5,038,956 - 5,061,559 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAAF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	69,554,454 - 69,586,476 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	69,554,578 - 69,586,365 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	6,167,981 - 6,201,533 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnaaf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	3,412,888 - 3,441,710 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dnaaf1
111 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	141
Count of miRNA genes:	120
Interacting mature miRNAs:	124
Transcripts:	ENSRNOT00000020917
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	33838214	55283146	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat

Markers in Region

RH134909

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	47,652,582 - 47,652,773 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	52,246,199 - 52,246,389	NCBI	Rnor6.0
Rnor_5.0	19	62,994,413 - 62,994,603	UniSTS	Rnor5.0
RGSC_v3.4	19	49,842,503 - 49,842,693	UniSTS	RGSC3.4
Celera	19	46,911,644 - 46,911,834	UniSTS
RH 3.4 Map	19	649.0	UniSTS
Cytogenetic Map	19	q12	UniSTS

AI145291

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	47,652,061 - 47,652,279 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	52,245,678 - 52,245,895	NCBI	Rnor6.0
Rnor_5.0	19	62,993,892 - 62,994,109	UniSTS	Rnor5.0
RGSC_v3.4	19	49,841,982 - 49,842,199	UniSTS	RGSC3.4
Celera	19	46,911,123 - 46,911,340	UniSTS
RH 3.4 Map	19	653.0	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											5
Medium											7
Low		16	13		16		3	3	65	24	28	11	3
Below cutoff	3	27	37	34	3	34	4	6	9	11	1		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000020917 ⟹ ENSRNOP00000020917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	47,631,959 - 47,652,313 (+)	Ensembl
Rnor_6.0 Ensembl	19	52,225,582 - 52,245,929 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079580 ⟹ ENSRNOP00000073360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	47,624,181 - 47,652,313 (+)	Ensembl
Rnor_6.0 Ensembl	19	52,217,984 - 52,245,914 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105457 ⟹ ENSRNOP00000085726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	47,634,543 - 47,652,313 (+)	Ensembl

RefSeq Acc Id:

NM_001014154 ⟹ NP_001014176

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	47,631,959 - 47,652,314 (+)	NCBI
Rnor_6.0	19	52,225,582 - 52,245,930 (+)	NCBI
Rnor_5.0	19	62,966,204 - 62,994,144 (+)	NCBI
RGSC_v3.4	19	49,821,884 - 49,842,234 (+)	RGD
Celera	19	46,891,007 - 46,911,375 (+)	RGD

Sequence:

show sequence

GCGTTGGACAGCCAACGACGCGGACTGTAGTACTGGAGCGGAGTGGCGGGGCAAGGAGCGAGCA
TGCACCCCGAAGCCTCAGAGCCGCCGGTGGACAGCGCGGCGGAGCCCAGTCTGGAGGAGTCCGC
AGGCGATCACGGCGACGCAGGCCCAGGGGTCCGCAAAGAAGAAATTAATGAGACCAAGGAAACA
TGTGTGGGTCCTTGTACAACATCCTGCCAAAGTCAGCAGCAACCGAGCGGTGACAATGGGTCAG
ATGGCCTCTTTACCCACTCGAGAGATGACAGAGATGATCGGGGCCCCAGGATGACGAAGCAGTT
CCTCCAAAAGCTCTGTAAGCAGCACAAGCTGTACGTCACCCCGGCCCTGAACGACACCCTGTAT
TTGCACTTTAAGGGCTTTGACCGCATTGAGAACCTGGAGGAGTACACGGGCCTGCGCTGCCTCT
GGCTGGAGTGCAACGGCATCCAGAGGATCGAGAATTTGCAGGCCCAGAGCGAGCTGCGCTGCCT
CTTCCTGCAAGTGAACCTGTTGCACAAGATCGAAAACCTGGAGCCGCTCCAGAAGCTGGACGCC
CTCAACCTGAGCAACAACTACATCAAGACCATTGAGAACCTCTCCTGTCTGCCGGTCCTTAACA
CTCTGCAAATGGCCCACAACCGCCTGGAGACCGTGGCAGACATTGAGCACCTCAGGGAGTGTCT
GCAACTCTGTGTCCTCGACCTCTCCCACAACTCGCTGAGTGACCCCGAGATCCTGAGCGTGCTT
GAGACCATGCCCTGTCTGCGTGTGCTGAACCTGATGGGGAACCCAGTGACCAAACACATCCCTA
ACTACCGCAGGACGGTCACTGTCCGACTGAAGCACTTGACTTATCTGGACGACAGGCCGGTTTT
CCCCAAGGACAGGGCGTGTGCAGAGGCCTGGGCCCGAGGCGGGTATGCTGCCGAGAAGGAAGAG
CGTCACCAGTGGGAGAGCAGGGAACACAAGAAGATAACAGACAGCCTGGAAGCCTTGGCCATGA
TCAAGCGGCGGGCCGAGGAACGGAAGAAGGCAAGAGACAGAGGGGAGACACCTCTGCCAGAGAG
TGAAAAGAGTATCCCCACTAGCCCAGAGGCTCAGGAAAAGCCTCCCAAGGGGGAAACCCAGCAG
AAGATGGAGTCGTTTGTGAAAGAGAGCTTTGAGGCCAAAGATGAACTGTTTCCAGAGAAGCCAG
GAGAAGGAGAGGAGCTGTCTGTGGTGGTGGGGAATAGAGCAGTGGAAGATGCAGACCTGTCCGG
GAACCTGGCTCACACCCAGACACCTGTGGTGGTCACCCCTGAAGAGGTCACATCTCCAGTGGAA
GCTACTGATGGGGCCAGAACGGAAGACACAGAGGCCATTGCCCTGGAGACCAAGGAGAAGCTTT
TCATCGATGACCTGCCTGACTTGGAAGATGTTGATGGTACAGATGTGTCTGTGGAAGACCAGAC
AAAGGACACAGGCATCCGGAAAATCCAGGCCATCTCCAGCTTGAGTGACGACAGTGACCTGGAG
CTGGAGGAGCTGCCCCTCTCCGTGTTCGAGGGCACTCCCATAAGCCCCACAGGCGCCCTCTCAC
ACATATTTGCGGTCTCCAAAGACCCCTCAGAGGCAGCCAGGGTGCCTTTCGCAGACATATGTAT
GCCAACAGCAACAACAGACTTAGAAACTCAAAGTCAAGACCCCAGCACAGCATCTTCACACCCC
CTCATCCAGGAGCTCGGAGAGGATGAGCTGACAGAGGGAGAGTCAAACCAGCCACTGCCACCCC
AAAGCTGTGCAAGTGACCCCACACTTGCCCAGTCTAGTGAAGGTGGAGACAGTCAGCTGCCTGC
AGCCACTCCACTAGGAGATGGAGCTGAGAATGAAGCACAGTCTTCGTTGTACCCAGAGGAGCCC
AGCACCCGGATAGGCCTGGAAGATATTGAATTTGGCTTGGACTGAACCCCAAGGCAGTCTACAC
TGTTAGTCTAGCAGTGGTGCAGCGGATGCAGGGCACCCTCTTCTATGTATCCCTGCTGGTTTGC
TCCGGCACCCTGCATGGCAGGTGCTGTGCAGCTACACCAGTGTGCCTGCCGTGTACCCAACACA
TCGGTTTCCCCTGGTTACAGATCCCACGAGAACATAAACACTTAAGACCCGCATGGTCAGCATG
TTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017601323 ⟹ XP_017456812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	47,624,534 - 47,652,311 (+)	NCBI
Rnor_6.0	19	52,217,427 - 52,245,930 (+)	NCBI

Sequence:

show sequence

AGAGAGAGCTGCTCTTTGTGGACAGGAGCAAAACCAGAAGGAGCAGATGTCCTCAGCAGGAAGG
AGAACCCTGGCCTTCACGGCTCTGCATTCAGATAGCATTAATTCTTGAGAGCAGCTGGCCTGAG
ACTGTGGAGGTGACCGTGGAGGCGTGACCCCACTGTTTAACACCGGTGGCTCAGAAAGCTCTTG
CCTTCCAAGGAGATTATGCAACAGAGCTACTGAATTCCTCCAAAACTCCTGAGTCTGGGCTACC
AGCAGCCTAAACAAAGATAAACTCCGGTGCCCTACTTCAAAGCTGTGGGAGGCACAATTATCAC
TGGGTAGCAGCCTGGGATGTGTTCAGCTCCTGGCATTATTCAGTCAGCAAGTACAGAGGACCTA
CTACCTCAACAGTGACCAACAGGATAAACACAGAGTGACAGCACGTGGCCTTGGCCCCAAGAAA
GCATGCATATAAGGTTCGAGAAAGTCCCACACGTCTTCTAAGTGAGTACACAGCAAATATGTAG
TAAAGGGCGACGAGTCCCAGGTATGGTAACGGATGTCACGCATCCAAGACGCAGGCAGACATTT
AACAACTAAAAAGCAACCCTGCCTGGGTACCTAGCCTATGAGCAGAAGTGACCTGGAGAGGAGG
ACACTGGCCAGGTACCGTCCCGATGGCAAATGGCATCACCAAGGGCTGTGCTCCACCCTGGACC
GCAGCAGATGAGCCACTGCAGTCAGATCCAGGGCACACCAAGCAGCTGGATGAGACCGAAGGCT
CACACACTCACAGTAGAACAGAAATTAATGAGACCAAGGAAACATGTGTGGGTCCTTGTACAAC
ATCCTGCCAAAGTCAGCAGCAACCGAGCGGTGACAATGGGTCAGATGGCCTCTTTACCCACTCG
AGAGATGACAGAGATGATCGGGGCCCCAGGATGACGAAGCAGTTCCTCCAAAAGCTCTGTAAGC
AGCACAAGCTGTACGTCACCCCGGCCCTGAACGACACCCTGTATTTGCACTTTAAGGGCTTTGA
CCGCATTGAGAACCTGGAGGAGTACACGGGCCTGCGCTGCCTCTGGCTGGAGTGCAACGGCATC
CAGAGGATCGAGAATTTGCAGGCCCAGAGCGAGCTGCGCTGCCTCTTCCTGCAAGTGAACCTGT
TGCACAAGATCGAAAACCTGGAGCCGCTCCAGAAGCTGGACGCCCTCAACCTGAGCAACAACTA
CATCAAGACCATTGAGAACCTCTCCTGTCTGCCGGTCCTTAACACTCTGCAAATGGCCCACAAC
CGCCTGGAGACCGTGGCAGACATTGAGCACCTCAGGGAGTGTCTGCAACTCTGTGTCCTCGACC
TCTCCCACAACTCGCTGAGTGACCCCGAGATCCTGAGCGTGCTTGAGACCATGCCCTGTCTGCG
TGTGCTGAACCTGATGGGGAACCCAGTGACCAAACACATCCCTAACTACCGCAGGACGGTCACT
GTCCGACTGAAGCACTTGACTTATCTGGACGACAGGCCGGTTTTCCCCAAGGACAGGGCGTGTG
CAGAGGCCTGGGCCCGAGGCGGGTATGCTGCCGAGAAGGAAGAGCGTCACCAGTGGGAGAGCAG
GGAACACAAGAAGATAACAGACAGCCTGGAAGCCTTGGCCATGATCAAGCGGCGGGCCGAGGAA
CGGAAGAAGGCAAGAGACAGAGGGGAGACACCTCTGCCAGAGAGTGAAAAGAGTATCCCCACTA
GCCCAGAGGCTCAGGAAAAGCCTCCCAAGGGGGAAACCCAGCAGAAGATGGAGTCGTTTGTGAA
AGAGAGCTTTGAGGCCAAAGATGAACTGTTTCCAGAGAAGCCAGGAGAAGGAGAGGAGCTGTCT
GTGGTGGTGGGGAATAGAGCAGTGGAAGATGCAGACCTGTCCGGGAACCTGGCTCACACCCAGA
CACCTGTGGTGGTCACCCCTGAAGAGGTCACATCTCCAGTGGAAGCTACTGATGGGGCCAGAAC
GGAAGACACAGAGGCCATTGCCCTGGAGACCAAGGAGAAGCTTTTCATCGATGACCTGCCTGAC
TTGGAAGATGTTGATGGTACAGATGTGTCTGTGGAAGACCAGACAAAGGACACAGGCATCCGGA
AAATCCAGGCCATCTCCAGCTTGAGTGACGACAGTGACCTGGAGCTGGAGGAGCTGCCCCTCTC
CGTGTTCGAGGGCACTCCCATAAGCCCCACAGGCGCCCTCTCACACATATTTGCGGTCTCCAAA
GACCCCTCAGAGGCAGCCAGGGTGCCTTTCGCAGACATATGTATGCCAACAGCAACAACAGACT
TAGAAACTCAAAGTCAAGACCCCAGCACAGCATCTTCACACCCCCTCATCCAGGAGCTCGGAGA
GGATGAGCTGACAGAGGGAGAGTCAAACCAGCCACTGCCACCCCAAAGCTGTGCAAGTGACCCC
ACACTTGCCCAGTCTAGTGAAGGTGGAGACAGTCAGCTGCCTGCAGCCACTCCACTAGGAGATG
GAGCTGAGAATGAAGCACAGTCTTCGTTGTACCCAGAGGAGCCCAGCACCCGGATAGGCCTGGA
AGATATTGAATTTGGCTTGGACTGAACCCCAAGGCAGTCTACACTGTTAGTCTAGCAGTGGTGC
AGCGGATGCAGGGCACCCTCTTCTATGTATCCCTGCTGGTTTGCTCCGGCACCCTGCATGGCAG
GTGCTGTGCAGCTACACCAGTGTGCCTGCCGTGTACCCAACACATCGGTTTCCCCTGGTTACAG
ATCCCACGAGAACATAAACACTTAAGACCCGCATGGTCAGCATGTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014176	(Get FASTA)	NCBI Sequence Viewer
	XP_017456812	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79038	(Get FASTA)	NCBI Sequence Viewer
	EDL92672	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020917
	ENSRNOP00000073360
	ENSRNOP00000073360.1
	ENSRNOP00000085726.1
GenBank Protein	Q6AYH9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014176 ⟸ NM_001014154

- UniProtKB:

Q6AYH9 (UniProtKB/Swiss-Prot), A6IZJ4 (UniProtKB/TrEMBL), A0A8I6A474 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHPEASEPPVDSAAEPSLEESAGDHGDAGPGVRKEEINETKETCVGPCTTSCQSQQQPSGDNGS
DGLFTHSRDDRDDRGPRMTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCL
WLECNGIQRIENLQAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLN
TLQMAHNRLETVADIEHLRECLQLCVLDLSHNSLSDPEILSVLETMPCLRVLNLMGNPVTKHIP
NYRRTVTVRLKHLTYLDDRPVFPKDRACAEAWARGGYAAEKEERHQWESREHKKITDSLEALAM
IKRRAEERKKARDRGETPLPESEKSIPTSPEAQEKPPKGETQQKMESFVKESFEAKDELFPEKP
GEGEELSVVVGNRAVEDADLSGNLAHTQTPVVVTPEEVTSPVEATDGARTEDTEAIALETKEKL
FIDDLPDLEDVDGTDVSVEDQTKDTGIRKIQAISSLSDDSDLELEELPLSVFEGTPISPTGALS
HIFAVSKDPSEAARVPFADICMPTATTDLETQSQDPSTASSHPLIQELGEDELTEGESNQPLPP
QSCASDPTLAQSSEGGDSQLPAATPLGDGAENEAQSSLYPEEPSTRIGLEDIEFGLD

hide sequence

RefSeq Acc Id:	XP_017456812 ⟸ XM_017601323
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5B1 (UniProtKB/TrEMBL), A0A8I6A474 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANGITKGCAPPWTAADEPLQSDPGHTKQLDETEGSHTHSRTEINETKETCVGPCTTSCQSQQQ PSGDNGSDGLFTHSRDDRDDRGPRMTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEE YTGLRCLWLECNGIQRIENLQAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENL SCLPVLNTLQMAHNRLETVADIEHLRECLQLCVLDLSHNSLSDPEILSVLETMPCLRVLNLMGN PVTKHIPNYRRTVTVRLKHLTYLDDRPVFPKDRACAEAWARGGYAAEKEERHQWESREHKKITD SLEALAMIKRRAEERKKARDRGETPLPESEKSIPTSPEAQEKPPKGETQQKMESFVKESFEAKD ELFPEKPGEGEELSVVVGNRAVEDADLSGNLAHTQTPVVVTPEEVTSPVEATDGARTEDTEAIA LETKEKLFIDDLPDLEDVDGTDVSVEDQTKDTGIRKIQAISSLSDDSDLELEELPLSVFEGTPI SPTGALSHIFAVSKDPSEAARVPFADICMPTATTDLETQSQDPSTASSHPLIQELGEDELTEGE SNQPLPPQSCASDPTLAQSSEGGDSQLPAATPLGDGAENEAQSSLYPEEPSTRIGLEDIEFGLD hide sequence

RefSeq Acc Id:

ENSRNOP00000073360 ⟸ ENSRNOT00000079580

RefSeq Acc Id:

ENSRNOP00000020917 ⟸ ENSRNOT00000020917

RefSeq Acc Id:

ENSRNOP00000085726 ⟸ ENSRNOT00000105457

Protein Domains

LRRCT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYH9-F1-model_v2	AlphaFold	Q6AYH9	1-633	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701182

Promoter ID:

EPDNEW_R11704

Type:

initiation region

Name:

Dnaaf1_1

Description:

dynein, axonemal, assembly factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	52,225,587 - 52,225,647	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310542	AgrOrtholog
BioCyc Gene	G2FUF-5513	BioCyc
Ensembl Genes	ENSRNOG00000015590	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020917	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000079580	ENTREZGENE
	ENSRNOT00000079580.2	UniProtKB/TrEMBL
	ENSRNOT00000105457.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7114363	IMAGE-MGC_LOAD
InterPro	Leu-rich_rpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361419	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93967	IMAGE-MGC_LOAD
NCBI Gene	361419	ENTREZGENE
PANTHER	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR45973:SF19	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LRR_9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Dnaaf1	PhenoGen
PROSITE	LRR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015590	RatGTEx
SMART	LRR_SD22	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Outer arm dynein light chain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K5B1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A474	ENTREZGENE, UniProtKB/TrEMBL
	A6IZJ4	ENTREZGENE, UniProtKB/TrEMBL
	DAAF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Dnaaf1	dynein, axonemal, assembly factor 1	Lrrc50	leucine rich repeat containing 50	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Lrrc50	leucine rich repeat containing 50	RGD1310542	similar to RIKEN cDNA 4930457P18	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1310542	similar to RIKEN cDNA 4930457P18	RGD1310542_predicted	similar to RIKEN cDNA 4930457P18 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310542_predicted	similar to RIKEN cDNA 4930457P18 (predicted)	LOC361419_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361419_predicted	similar to RIKEN cDNA 4930457P18 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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