Arl13b (ADP-ribosylation factor like GTPase 13B) - Rat Genome Database

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Gene: Arl13b (ADP-ribosylation factor like GTPase 13B) Rattus norvegicus
Analyze
Symbol: Arl13b
Name: ADP-ribosylation factor like GTPase 13B
RGD ID: 1584979
Description: Predicted to enable GTP binding activity and GTPase activity. Involved in response to lithium ion. Predicted to be located in axoneme. Predicted to be active in ciliary membrane; motile cilium; and non-motile cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 8. Orthologous to human ARL13B (ADP ribosylation factor like GTPase 13B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADP-ribosylation factor-like 13B; ADP-ribosylation factor-like protein 13B; LOC304037; similar to ADP-ribosylation factor-like 2-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.211150,100 - 217,103 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl11150,955 - 217,197 (-)Ensembl
Rnor_6.071,122,567 - 1,188,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl71,122,567 - 1,188,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.071,111,829 - 1,181,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13160,428 - 223,413 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:15755804   PMID:20159594   PMID:21209331   PMID:21976698   PMID:22179047   PMID:22554696   PMID:22689656   PMID:23014696   PMID:23153492   PMID:23351563   PMID:23817546   PMID:24336288  
PMID:24421332   PMID:26582389   PMID:27623382   PMID:29487109  


Genomics

Comparative Map Data
Arl13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.211150,100 - 217,103 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl11150,955 - 217,197 (-)Ensembl
Rnor_6.071,122,567 - 1,188,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl71,122,567 - 1,188,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.071,111,829 - 1,181,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13160,428 - 223,413 (-)NCBICelera
Cytogenetic Map7q11NCBI
ARL13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38393,980,155 - 94,055,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl393,980,139 - 94,055,678 (+)EnsemblGRCh38hg38GRCh38
GRCh37393,698,999 - 93,774,522 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36395,181,672 - 95,256,813 (+)NCBINCBI36hg18NCBI36
Build 34395,181,671 - 95,256,811NCBI
Celera392,082,477 - 92,158,408 (+)NCBI
Cytogenetic Map3q11.1-q11.2NCBI
HuRef391,061,683 - 91,137,139 (+)NCBIHuRef
CHM1_1393,662,067 - 93,737,527 (+)NCBICHM1_1
T2T-CHM13v2.0396,678,283 - 96,754,130 (+)NCBI
Arl13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391662,613,671 - 62,667,418 (-)NCBIGRCm39mm39
GRCm39 Ensembl1662,614,048 - 62,667,403 (-)Ensembl
GRCm381662,793,308 - 62,847,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1662,793,685 - 62,847,040 (-)EnsemblGRCm38mm10GRCm38
MGSCv371662,793,515 - 62,846,866 (-)NCBIGRCm37mm9NCBIm37
MGSCv361662,735,945 - 62,789,253 (-)NCBImm8
Celera1663,102,388 - 63,155,607 (-)NCBICelera
Cytogenetic Map16C1.3NCBI
Arl13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554073,402,908 - 3,460,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554073,402,214 - 3,477,839 (-)NCBIChiLan1.0ChiLan1.0
ARL13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1397,725,136 - 97,799,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl397,725,136 - 97,799,932 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0391,044,332 - 91,121,686 (+)NCBIMhudiblu_PPA_v0panPan3
ARL13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1331,698,360 - 1,762,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl331,698,363 - 1,761,641 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,878,107 - 1,942,635 (+)NCBI
ROS_Cfam_1.0331,798,026 - 1,862,534 (+)NCBI
ROS_Cfam_1.0 Ensembl331,798,051 - 1,862,531 (+)Ensembl
UMICH_Zoey_3.1331,707,188 - 1,771,378 (+)NCBI
UNSW_CanFamBas_1.0331,742,070 - 1,806,566 (+)NCBI
UU_Cfam_GSD_1.0331,967,145 - 2,031,460 (+)NCBI
Arl13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602155,334,820 - 155,399,714 (-)NCBI
SpeTri2.0NW_004936666115,964 - 179,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13165,828,059 - 165,911,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113165,829,772 - 165,910,959 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARL13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12286,648,924 - 86,722,006 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2286,651,076 - 86,721,948 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604179,960,967 - 80,033,874 (+)NCBIVero_WHO_p1.0
Arl13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247896,710,681 - 6,783,667 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247896,710,858 - 6,783,097 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH144230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.211172,117 - 172,238 (+)MAPPERmRatBN7.2
Rnor_6.071,144,265 - 1,144,385NCBIRnor6.0
Rnor_5.071,133,252 - 1,133,372UniSTSRnor5.0
Celera13181,559 - 181,679UniSTS
Cytogenetic Map11q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:165
Interacting mature miRNAs:201
Transcripts:ENSRNOT00000074108
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 22 14 6 9 6 73 22 39 11
Low 3 21 43 35 10 35 8 10 1 13 2 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000074108   ⟹   ENSRNOP00000067810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11150,955 - 216,967 (-)Ensembl
Rnor_6.0 Ensembl71,122,567 - 1,188,209 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076063   ⟹   ENSRNOP00000068236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11150,955 - 217,197 (-)Ensembl
Rnor_6.0 Ensembl71,122,577 - 1,188,165 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099706   ⟹   ENSRNOP00000084231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11152,144 - 216,967 (-)Ensembl
RefSeq Acc Id: NM_001107101   ⟹   NP_001100571
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211150,955 - 216,967 (-)NCBI
Rnor_6.071,122,567 - 1,188,209 (-)NCBI
Rnor_5.071,111,829 - 1,181,765 (-)NCBI
Celera13160,428 - 223,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240716   ⟹   XP_006240778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211154,522 - 217,103 (-)NCBI
Rnor_6.071,126,631 - 1,161,902 (-)NCBI
Rnor_5.071,111,829 - 1,181,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088391   ⟹   XP_038944319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211154,522 - 216,948 (-)NCBI
RefSeq Acc Id: XM_039088392   ⟹   XP_038944320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211150,963 - 216,947 (-)NCBI
RefSeq Acc Id: XM_039088393   ⟹   XP_038944321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211154,522 - 216,948 (-)NCBI
RefSeq Acc Id: XR_005491034
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211150,100 - 216,948 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100571   ⟸   NM_001107101
- UniProtKB: M0RDU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240778   ⟸   XM_006240716
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000068236   ⟸   ENSRNOT00000076063
RefSeq Acc Id: ENSRNOP00000067810   ⟸   ENSRNOT00000074108
RefSeq Acc Id: XP_038944320   ⟸   XM_039088392
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944321   ⟸   XM_039088393
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944319   ⟸   XM_039088391
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000084231   ⟸   ENSRNOT00000099706

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDU9-F1-model_v2 AlphaFold M0RDU9 1-427 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694916
Promoter ID:EPDNEW_R5438
Type:multiple initiation site
Name:Arl13b_1
Description:ADP-ribosylation factor like GTPase 13B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.071,188,162 - 1,188,222EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
7 1124565 1124566 G C snv F344/NRrrc (MCW), MR/N (MCW), WN/N (MCW), F344/NCrl (RGD), MHS/Gib (RGD), WN/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), MWF/Hsd (2019), WAG/RijCrl (2020), WAG/Rij (RGD)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 177797 177798 C G snv HXB2/IpcvMcwi (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584979 AgrOrtholog
BioCyc Gene G2FUF-22338 BioCyc
Ensembl Genes ENSRNOG00000047194 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000067810 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068236 UniProtKB/TrEMBL
  ENSRNOP00000084231 ENTREZGENE
Ensembl Transcript ENSRNOT00000074108 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000076063 UniProtKB/TrEMBL
  ENSRNOT00000099706 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report rno:304037 UniProtKB/TrEMBL
NCBI Gene 304037 ENTREZGENE
Pfam Arf UniProtKB/TrEMBL
PhenoGen Arl13b PhenoGen
PRINTS SAR1GTPBP UniProtKB/TrEMBL
SMART SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt M0RDU9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Arl13b  ADP-ribosylation factor like GTPase 13B  Arl13b  ADP-ribosylation factor-like 13B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Arl13b  ADP-ribosylation factor-like 13B  LOC304037  similar to ADP-ribosylation factor-like 2-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC304037  similar to ADP-ribosylation factor-like 2-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL