Osr1 (odd-skipped related transcription factor 1) - Rat Genome Database

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Gene: Osr1 (odd-skipped related transcription factor 1) Rattus norvegicus
Analyze
Symbol: Osr1
Name: odd-skipped related transcription factor 1
RGD ID: 1311807
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including embryonic limb morphogenesis; kidney development; and negative regulation of ion transmembrane transporter activity. Predicted to act upstream of or within several processes, including cellular response to retinoic acid; gonad development; and intermediate mesoderm development. Located in cytosol. Is extrinsic component of membrane. Orthologous to human OSR1 (odd-skipped related transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298878; odd-skipped related 1; odd-skipped related 1 (Drosophila); odd-skipped related transciption factor 1; Odd1; protein odd-skipped-related 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2632,369,561 - 32,380,822 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl632,373,816 - 32,380,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx632,670,489 - 32,672,848 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0632,986,375 - 32,988,736 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0632,460,987 - 32,463,354 (+)NCBIRnor_WKY
Rnor_6.0635,314,431 - 35,321,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl635,314,444 - 35,321,667 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0645,074,989 - 45,086,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4633,074,410 - 33,076,769 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1633,062,739 - 33,079,153 (+)NCBI
Celera631,814,629 - 31,816,988 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (ISO)
cell proliferation involved in kidney development  (ISO,ISS)
cellular response to retinoic acid  (ISO)
chondrocyte differentiation  (ISO)
embryonic digit morphogenesis  (ISO)
embryonic forelimb morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic skeletal joint development  (ISO)
embryonic skeletal joint morphogenesis  (ISO)
embryonic skeletal limb joint morphogenesis  (ISO)
gonad development  (ISO)
heart development  (ISO,ISS)
intermediate mesoderm development  (ISO)
mesangial cell development  (ISO,ISS)
mesonephric duct morphogenesis  (ISO,ISS)
mesonephros development  (ISO,ISS)
metanephric cap mesenchymal cell proliferation involved in metanephros development  (ISO,ISS)
metanephric epithelium development  (ISO,ISS)
metanephric glomerulus vasculature development  (ISO,ISS)
metanephric interstitial fibroblast development  (ISO,ISS)
metanephric mesenchymal cell differentiation  (ISO,ISS)
metanephric mesenchyme development  (ISO,ISS)
metanephric mesenchyme morphogenesis  (ISO,ISS)
metanephric nephron tubule development  (ISO,ISS)
metanephric smooth muscle tissue development  (ISO,ISS)
metanephros development  (ISO)
middle ear morphogenesis  (ISO,ISS)
negative regulation of apoptotic process  (ISO,ISS)
negative regulation of creatine transmembrane transporter activity  (ISO)
negative regulation of epithelial cell differentiation  (ISO,ISS)
negative regulation of nephron tubule epithelial cell differentiation  (ISO,ISS)
negative regulation of sodium ion transmembrane transporter activity  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
odontogenesis  (ISO,ISS)
pattern specification involved in metanephros development  (ISO,ISS)
positive regulation of bone mineralization  (ISO)
positive regulation of epithelial cell proliferation  (ISO,ISS)
positive regulation of gastrulation  (ISO,ISS)
positive regulation of gene expression  (ISO,ISS)
positive regulation of transcription by RNA polymerase II  (ISO)
posterior mesonephric tubule development  (ISO,ISS)
pronephros development  (ISO,ISS)
regulation of transcription by RNA polymerase II  (IBA)
renal vesicle progenitor cell differentiation  (ISO,ISS)
roof of mouth development  (ISO,ISS)
sodium ion transmembrane transport  (ISO)
specification of anterior mesonephric tubule identity  (ISO,ISS)
specification of posterior mesonephric tubule identity  (ISO,ISS)
stem cell differentiation  (ISO,ISS)
ureter urothelium development  (ISO,ISS)
ureteric bud development  (ISO,ISS)
urogenital system development  (IBA,ISO,ISS)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Identification of the WNK-SPAK/OSR1 signaling pathway in rodent and human lenses. Vorontsova I, etal., Invest Ophthalmol Vis Sci. 2014 Dec 16;56(1):310-21. doi: 10.1167/iovs.14-15911.
Additional References at PubMed
PMID:12477932   PMID:16223478   PMID:16669787   PMID:16790474   PMID:17547533   PMID:18835385   PMID:19307180   PMID:19389375   PMID:20171952   PMID:21262216   PMID:21281489   PMID:22238094  
PMID:25531585  


Genomics

Comparative Map Data
Osr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2632,369,561 - 32,380,822 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl632,373,816 - 32,380,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx632,670,489 - 32,672,848 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0632,986,375 - 32,988,736 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0632,460,987 - 32,463,354 (+)NCBIRnor_WKY
Rnor_6.0635,314,431 - 35,321,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl635,314,444 - 35,321,667 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0645,074,989 - 45,086,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4633,074,410 - 33,076,769 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1633,062,739 - 33,079,153 (+)NCBI
Celera631,814,629 - 31,816,988 (+)NCBICelera
Cytogenetic Map6q14NCBI
OSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38219,344,874 - 19,358,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl219,351,485 - 19,358,623 (-)EnsemblGRCh38hg38GRCh38
GRCh37219,551,246 - 19,558,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36219,414,727 - 19,421,853 (-)NCBINCBI36Build 36hg18NCBI36
Celera219,413,711 - 19,420,835 (-)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef219,308,802 - 19,315,925 (-)NCBIHuRef
CHM1_1219,480,638 - 19,487,763 (-)NCBICHM1_1
T2T-CHM13v2.0219,384,294 - 19,391,428 (-)NCBIT2T-CHM13v2.0
Osr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,624,442 - 9,631,500 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,620,116 - 9,631,500 (+)EnsemblGRCm39 Ensembl
GRCm38129,574,442 - 9,581,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,570,116 - 9,581,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv37129,581,248 - 9,588,306 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36129,600,505 - 9,606,919 (+)NCBIMGSCv36mm8
Celera129,956,176 - 9,963,227 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map124.05NCBI
Osr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554691,953,370 - 1,961,390 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554691,954,470 - 1,961,344 (-)NCBIChiLan1.0ChiLan1.0
OSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A19,451,067 - 19,458,229 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A19,451,067 - 19,458,229 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A19,333,101 - 19,340,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
OSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11714,508,543 - 14,515,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1714,509,333 - 14,589,228 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1714,460,884 - 14,467,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01714,653,874 - 14,660,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1714,653,360 - 14,847,114 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11714,507,592 - 14,514,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01714,515,766 - 14,522,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01714,546,710 - 14,553,327 (-)NCBIUU_Cfam_GSD_1.0
Osr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629258,944,539 - 58,951,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649311,888,024 - 11,895,058 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493649311,888,024 - 11,895,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3118,757,920 - 118,765,102 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13118,368,471 - 118,765,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23126,839,630 - 126,845,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11488,364,115 - 88,371,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1488,364,166 - 88,371,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604523,861,885 - 23,869,038 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247382,136,151 - 2,138,441 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247382,136,228 - 2,559,092 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Osr1
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:191
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000005666
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat

Markers in Region
Osr1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2632,380,204 - 32,380,355 (+)MAPPERmRatBN7.2
Rnor_6.0635,320,848 - 35,320,996NCBIRnor6.0
Rnor_5.0645,085,709 - 45,085,857UniSTSRnor5.0
RGSC_v3.4633,076,159 - 33,076,307UniSTSRGSC3.4
Celera631,816,378 - 31,816,526UniSTS
Cytogenetic Map6q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 5 8 25
Low 3 33 25 9 16 9 8 11 67 24 16 11 8
Below cutoff 22 22 3 22 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005666   ⟹   ENSRNOP00000005666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl632,373,816 - 32,380,816 (+)Ensembl
Rnor_6.0 Ensembl635,314,444 - 35,321,667 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104721   ⟹   ENSRNOP00000085278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl632,377,537 - 32,380,817 (+)Ensembl
RefSeq Acc Id: NM_001106716   ⟹   NP_001100186
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2632,378,456 - 32,380,817 (+)NCBI
Rnor_6.0635,319,099 - 35,321,458 (+)NCBI
Rnor_5.0645,074,989 - 45,086,319 (+)NCBI
RGSC_v3.4633,074,410 - 33,076,769 (+)RGD
Celera631,814,629 - 31,816,988 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239886   ⟹   XP_006239948
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2632,373,764 - 32,380,822 (+)NCBI
Rnor_6.0635,314,431 - 35,321,458 (+)NCBI
Rnor_5.0645,074,989 - 45,086,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111941   ⟹   XP_038967869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2632,369,561 - 32,380,822 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100186 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967869 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI59411 (Get FASTA)   NCBI Sequence Viewer  
  B0K011 (Get FASTA)   NCBI Sequence Viewer  
  EDM03089 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100186   ⟸   NM_001106716
- UniProtKB: B0K011 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006239948   ⟸   XM_006239886
- Peptide Label: isoform X1
- UniProtKB: B0K011 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005666   ⟸   ENSRNOT00000005666
RefSeq Acc Id: XP_038967869   ⟸   XM_039111941
- Peptide Label: isoform X1
- UniProtKB: B0K011 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000085278   ⟸   ENSRNOT00000104721
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0K011-F1-model_v2 AlphaFold B0K011 1-266 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694492
Promoter ID:EPDNEW_R5015
Type:multiple initiation site
Name:Osr1_1
Description:odd-skipped related transciption factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0635,314,463 - 35,314,523EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311807 AgrOrtholog
BioCyc Gene G2FUF-38164 BioCyc
Ensembl Genes ENSRNOG00000004210 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005666.5 UniProtKB/TrEMBL
  ENSRNOP00000085278.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005666.7 UniProtKB/TrEMBL
  ENSRNOT00000104721.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8366695 IMAGE-MGC_LOAD
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:298878 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188687 IMAGE-MGC_LOAD
NCBI Gene 298878 ENTREZGENE
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Osr1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZZT8_RAT UniProtKB/TrEMBL
  A0A8L2Q278_RAT UniProtKB/TrEMBL
  B0K011 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Osr1  odd-skipped related transcription factor 1  Osr1  odd-skipped related transciption factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-19 Osr1  odd-skipped related transciption factor 1  Osr1  odd-skipped related 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Osr1  odd-skipped related 1 (Drosophila)   Osr1_predicted  odd-skipped related 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Osr1_predicted  odd-skipped related 1 (Drosophila) (predicted)      Symbol and Name updated 1299863 APPROVED
2006-03-28 Osr1_predicted    Odd1_predicted  odd-skipped related 1 (Drosophila) (predicted)  Symbol updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-12 Odd1_predicted  odd-skipped related 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED