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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Microcephaly, Short Stature, and Polymicrogyria with or without Seizures | | ISO | RGD:1315475 | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Microcephaly, Short Stature, and Polymicrogyria with or without Seizures | | ISO | RGD:1315475 | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Rttn (Rattus norvegicus - Norway rat) |
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RTTN (Homo sapiens - human) |
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Rttn (Mus musculus - house mouse) |
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Rttn (Chinchilla lanigera - long-tailed chinchilla) |
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RTTN (Pan paniscus - bonobo/pygmy chimpanzee) |
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RTTN (Canis lupus familiaris - dog) |
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Rttn (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RTTN (Sus scrofa - pig) |
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RTTN (Chlorocebus sabaeus - green monkey) |
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Rttn (Heterocephalus glaber - naked mole-rat) |
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Variants in Rttn
509 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
UniSTS:237862 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 7 | 15 | 10 | 2 | 11 | 6 | |||||||
Low | 3 | 42 | 49 | 40 | 4 | 40 | 8 | 11 | 64 | 33 | 30 | 5 | 8 |
Below cutoff | 1 | 1 | 1 | 1 |
RefSeq Transcripts | NM_001170436 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039096615 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096616 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096617 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096618 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096619 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096620 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096621 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039096622 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005495995 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | FN802245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JACYVU010000301 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000058160 ⟹ ENSRNOP00000054965 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000064901 ⟹ ENSRNOP00000063323 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076159 ⟹ ENSRNOP00000068057 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001170436 ⟹ NP_001163907 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039096615 ⟹ XP_038952543 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096616 ⟹ XP_038952544 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096617 ⟹ XP_038952545 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096618 ⟹ XP_038952546 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096619 ⟹ XP_038952547 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096620 ⟹ XP_038952548 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096621 ⟹ XP_038952549 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039096622 ⟹ XP_038952550 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005495995 | ||||||||
RefSeq Status: | |||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001163907 | (Get FASTA) | NCBI Sequence Viewer |
XP_038952543 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952544 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952545 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952546 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952547 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952548 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952549 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038952550 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001163907 ⟸ NM_001170436 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000054965 ⟸ ENSRNOT00000058160 |
RefSeq Acc Id: | ENSRNOP00000063323 ⟸ ENSRNOT00000064901 |
RefSeq Acc Id: | ENSRNOP00000068057 ⟸ ENSRNOT00000076159 |
RefSeq Acc Id: | XP_038952549 ⟸ XM_039096621 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038952543 ⟸ XM_039096615 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038952545 ⟸ XM_039096617 |
- Peptide Label: | isoform X3 |
- UniProtKB: | D3ZS92 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038952544 ⟸ XM_039096616 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038952548 ⟸ XM_039096620 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A096MJA7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038952546 ⟸ XM_039096618 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_038952547 ⟸ XM_039096619 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A096MJA7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038952550 ⟸ XM_039096622 |
- Peptide Label: | isoform X7 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZS92-F1-model_v2 | AlphaFold | D3ZS92 | 1-1629 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13700897 | ||||||||
Promoter ID: | EPDNEW_R11421 | ||||||||
Type: | single initiation site | ||||||||
Name: | Rttn_1 | ||||||||
Description: | rotatin | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1306706 | AgrOrtholog |
BioCyc Gene | G2FUF-6692 | BioCyc |
Ensembl Genes | ENSRNOG00000038200 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000054965 | ENTREZGENE |
ENSRNOP00000054965.5 | UniProtKB/TrEMBL | |
ENSRNOP00000068057 | ENTREZGENE | |
ENSRNOP00000068057.2 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000058160 | ENTREZGENE |
ENSRNOT00000058160.6 | UniProtKB/TrEMBL | |
ENSRNOT00000076159 | ENTREZGENE | |
ENSRNOT00000076159.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.25.10.10 | UniProtKB/TrEMBL |
InterPro | ARM-like | UniProtKB/TrEMBL |
ARM-type_fold | UniProtKB/TrEMBL | |
Rotatin | UniProtKB/TrEMBL | |
Rotatin_N | UniProtKB/TrEMBL | |
NCBI Gene | 291377 | ENTREZGENE |
PANTHER | PTHR31691 | UniProtKB/TrEMBL |
Pfam | RTTN_N | UniProtKB/TrEMBL |
PhenoGen | Rttn | PhenoGen |
Superfamily-SCOP | SSF48371 | UniProtKB/TrEMBL |
UniProt | A0A096MJA7 | ENTREZGENE, UniProtKB/TrEMBL |
D3ZS92 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Rttn | rotatin | Rttn_predicted | rotatin (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Rttn_predicted | rotatin (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |