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Gene: Vangl2 (VANGL planar cell polarity protein 2) Rattus norvegicus

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Symbol:

Vangl2

Name:

VANGL planar cell polarity protein 2

RGD ID:

1309442

Description:

Predicted to be involved in several processes, including Wnt signaling pathway, planar cell polarity pathway; axon guidance; and morphogenesis of an epithelium. Predicted to act upstream of or within several processes, including inner ear development; morphogenesis of an epithelium; and ventricular septum morphogenesis. Is active in glutamatergic synapse and postsynaptic density membrane. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; Wnt signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC289229; loop tail associated protein; Ltap; van Gogh-like protein 2; vang-like 2 (van gogh, Drosophila); vang-like protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VANGL2 (VANGL planar cell polarity protein 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Vangl2 (VANGL planar cell polarity 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vangl2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VANGL2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VANGL2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vangl2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VANGL2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VANGL2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vangl2 (VANGL planar cell polarity protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	VANGL1 (VANGL planar cell polarity protein 1)	HGNC	OrthoDB
Homo sapiens (human):	KMO (kynurenine 3-monooxygenase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	VANGL2 (VANGL planar cell polarity protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Vangl2 (VANGL planar cell polarity 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vangl2 (VANGL planar cell polarity protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vang-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Vang	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vangl2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,995,124 - 87,021,770 (-)	NCBI		GRCr8
mRatBN7.2	13	84,462,731 - 84,489,404 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,465,527 - 84,489,378 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,968,878 - 86,992,738 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,369,149 - 88,393,001 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,553,752 - 85,577,558 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,379,203 - 90,405,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,380,632 - 90,405,591 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,902,313 - 94,928,719 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,964,426 - 87,988,364 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	88,152,106 - 88,178,412 (-)	NCBI
Celera	13	84,077,622 - 84,101,482 (-)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Kidney Neoplasms (ISO)

neural tube defect (ISO,ISS)

parathyroid carcinoma (ISO)

spina bifida (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

aldrin (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

camptothecin (ISO)

chloroethene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

diuron (EXP)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

nickel sulfate (ISO)

Nutlin-3 (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

propanal (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (IEA,ISO)

apical protein localization (IEA,ISO)

biological_process (ND)

cell migration involved in kidney development (IEA,ISO)

cochlea development (IEA,ISO)

cochlea morphogenesis (IEA,ISO)

convergent extension involved in axis elongation (IEA,ISO)

convergent extension involved in neural plate elongation (IEA,ISO)

convergent extension involved in organogenesis (IEA,ISO)

digestive tract morphogenesis (IEA,ISO)

dopaminergic neuron axon guidance (IEA,ISO)

establishment of body hair planar orientation (IEA,ISO)

establishment of planar polarity (IBA,IEA,ISO)

establishment of planar polarity involved in neural tube closure (IEA,ISO)

establishment or maintenance of epithelial cell apical/basal polarity (IEA,ISO)

glomerulus development (IEA,ISO)

hair follicle development (IEA,ISO)

heart looping (IEA,ISO)

heparan sulfate proteoglycan biosynthetic process (IEA,ISO)

inner ear receptor cell development (IEA,ISO)

inner ear receptor cell stereocilium organization (IEA,ISO)

kidney morphogenesis (IEA,ISO)

lateral sprouting involved in lung morphogenesis (IEA,ISO)

membranous septum morphogenesis (IEA,ISO)

muscular septum morphogenesis (IEA,ISO)

neural tube closure (IEA,ISO)

non-canonical Wnt signaling pathway (IEA,ISO)

non-motile cilium assembly (IEA,ISO)

orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis (IEA,ISO)

planar dichotomous subdivision of terminal units involved in lung branching morphogenesis (IEA,ISO)

positive regulation of JUN kinase activity (ISO)

post-anal tail morphogenesis (IEA,ISO)

regulation of actin cytoskeleton organization (IEA,ISO)

regulation of establishment of planar polarity (IEA,ISO)

regulation of synapse pruning (IEA,ISO)

regulation of Wnt signaling pathway (IEA,ISO)

Rho protein signal transduction (IEA,ISO)

serotonergic neuron axon guidance (IEA,ISO)

somatic stem cell division (IEA,ISO)

somatic stem cell population maintenance (IEA,ISO)

Wnt signaling pathway, planar cell polarity pathway (IBA,IEA,ISO)

wound healing (IEA,ISO)

Cellular Component

apical cytoplasm (IEA,ISO)

apical plasma membrane (IEA,ISO)

basolateral plasma membrane (IEA,ISO)

cell periphery (IEA,ISO)

cell pole (IEA,ISO)

cell-cell junction (IEA,ISO)

COPII-coated ER to Golgi transport vesicle (IEA,ISO)

glutamatergic synapse (IDA,IEA,IMP,ISO)

lateral plasma membrane (IEA,ISO)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

postsynaptic density membrane (IDA,IEA,IMP,ISO)

stress fiber (IEA,ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Wnt signaling pathway (IEA)

Wnt signaling, the planar cell polarity pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Planar cell polarity signaling in vertebrates.	Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
3.	Structure and expression of Strabismus 1 gene on human chromosome 1q21-q23.	Katoh M Int J Oncol. 2002 Jun;20(6):1197-203.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	PDZ interaction of Vangl2 links PSD-95 and Prickle2 but plays only a limited role in the synaptic localisation of Vangl2.	Nagaoka T, etal., Sci Rep. 2015 Aug 10;5:12916. doi: 10.1038/srep12916.
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11440971	PMID:11709546	PMID:12499390	PMID:12724779	PMID:14512015	PMID:15057822	PMID:15195140	PMID:15229603	PMID:15637299	PMID:16116426	PMID:16170314	PMID:16495441
PMID:16571627	PMID:16687519	PMID:16962386	PMID:17229766	PMID:17376975	PMID:17433286	PMID:18066062	PMID:18257070	PMID:18606138	PMID:18849982	PMID:19008950	PMID:19300477
PMID:19497282	PMID:19701191	PMID:19966784	PMID:20215345	PMID:20223754	PMID:20473291	PMID:20534871	PMID:20643356	PMID:20704721	PMID:20843830	PMID:20940229	PMID:21106844
PMID:21246654	PMID:21718540	PMID:21761479	PMID:22871113	PMID:23760952	PMID:24302887	PMID:25387771	PMID:25605782	PMID:26683906	PMID:26990065	PMID:29454802	PMID:29497043

Genomics

Comparative Map Data

Vangl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,995,124 - 87,021,770 (-)	NCBI		GRCr8
mRatBN7.2	13	84,462,731 - 84,489,404 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,465,527 - 84,489,378 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,968,878 - 86,992,738 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,369,149 - 88,393,001 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,553,752 - 85,577,558 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,379,203 - 90,405,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,380,632 - 90,405,591 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,902,313 - 94,928,719 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,964,426 - 87,988,364 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	88,152,106 - 88,178,412 (-)	NCBI
Celera	13	84,077,622 - 84,101,482 (-)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

VANGL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	160,400,564 - 160,428,670 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	160,400,564 - 160,428,678 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	160,370,354 - 160,398,460 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,636,988 - 158,665,088 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	157,198,538 - 157,211,533	NCBI
Celera	1	133,439,094 - 133,467,201 (+)	NCBI		Celera
Cytogenetic Map	1	q23.2	NCBI
HuRef	1	131,726,520 - 131,754,628 (+)	NCBI		HuRef
CHM1_1	1	161,765,749 - 161,793,853 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,537,640 - 159,565,747 (+)	NCBI		T2T-CHM13v2.0

Vangl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,828,527 - 171,856,532 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,828,527 - 171,856,011 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	172,000,960 - 172,027,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	172,000,960 - 172,028,444 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	173,934,502 - 173,957,399 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,841,046 - 173,863,943 (-)	NCBI		MGSCv36	mm8
Celera	1	174,856,349 - 174,879,265 (-)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.54	NCBI

Vangl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,161,843 - 12,189,547 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	12,162,084 - 12,189,322 (+)	NCBI	ChiLan1.0	ChiLan1.0

VANGL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,423,065 - 89,451,027 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,163,031 - 89,190,979 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,754,897 - 135,783,031 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,676,595 - 139,704,281 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	139,683,745 - 139,704,281 (+)	Ensembl	panpan1.1		panPan2

VANGL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,822,873 - 21,824,537 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,892,456 - 21,915,854 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,934,985 - 21,958,434 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,928,893 - 21,958,752 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,823,051 - 21,846,540 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,235,964 - 22,259,526 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,645,964 - 22,669,547 (-)	NCBI		UU_Cfam_GSD_1.0

Vangl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,512,192 - 6,526,199 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	228,317 - 242,601 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	228,377 - 242,318 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VANGL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	90,051,277 - 90,080,635 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	90,051,994 - 90,080,701 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,945,552 - 97,971,014 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VANGL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	3,521,066 - 3,549,301 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	3,521,060 - 3,548,718 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	2,578,515 - 2,606,736 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vangl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	841,247 - 867,708 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	841,302 - 867,717 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Vangl2
92 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	67
Count of miRNA genes:	56
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000006849
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	74862117	85581182	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34663461	87525369	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	69060519	86800898	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	69060519	86800898	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	69060519	86800898	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

Markers in Region

RH138077

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	84,464,329 - 84,464,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	90,380,801 - 90,380,935	NCBI	Rnor6.0
Rnor_5.0	13	94,903,911 - 94,904,045	UniSTS	Rnor5.0
RGSC_v3.4	13	87,963,229 - 87,963,363	UniSTS	RGSC3.4
Celera	13	84,076,429 - 84,076,563	UniSTS
RH 3.4 Map	13	550.7	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	88	87	56	25	56	6	215	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006849 ⟹ ENSRNOP00000006849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	84,465,527 - 84,489,378 (-)	Ensembl
Rnor_6.0 Ensembl	13	90,381,998 - 90,405,591 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091710 ⟹ ENSRNOP00000072619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	90,380,632 - 90,405,358 (-)	Ensembl

RefSeq Acc Id:

NM_001105969 ⟹ NP_001099439

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,997,920 - 87,021,770 (-)	NCBI
mRatBN7.2	13	84,465,527 - 84,489,378 (-)	NCBI
Rnor_6.0	13	90,381,998 - 90,405,591 (-)	NCBI
Rnor_5.0	13	94,902,313 - 94,928,719 (-)	NCBI
RGSC_v3.4	13	87,964,426 - 87,988,364 (-)	RGD
Celera	13	84,077,622 - 84,101,482 (-)	RGD

Sequence:

show sequence

CAGATCTGATTCCTGATCCCCGATTGCTTGGTCCTGGGTCCCGCCATGGGAGCCTGAGCGCCCT
GCAGTTCCCCCGGCCCCCTGTCCCCGGGGCCTCGAGGGGGAAACAGCCGAGTGGTCTGGGACGG
AGCCGGGGTGAGCCACCTCAGGAGCCCCCTCGTCAACCCCCATCGCCCGCGCTGCCGGTTCTGG
AGCGCGGAGTTCGGAACGACCCGGTGCGCTGCGGATACAAAGGCGCGGAGCGGAGCGGGGCGTG
CGCCCAGTCCACCCGGCTTTTCGCAGCGGCGGCTCCCACCTGGGTGCTTCTACTCTGATCCCTG
TGCGATTCATCTTCCTGCTTTGCCTCTGGTCAACCTCCTCTCTCTCTGAGTTGACCCGAAACCT
CTCATACTCTACAGGGAGCTGTCGATTGAATTTCTCCGAGATAAGCCCACTCGTCCAGCAAAAT
AGAGTCCCTCAGGGTGACAGTTGACTTCCTAAAGGTGCCTCTTGGCCTGAAGAAGCCTGTGCTG
AAGGAGGTGGCTGTGGGGCCCCCCAAGAGGCCCCAGCCCGCGGCCCTGGAGCGCTACAAGGCAC
GGCGTTCAGACGCCATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGCCACTC
CCGCAGCTCCAGAAAGCACAGGGACCGCCGGGACCGACACCGCTCTAAGAGCCGGGATGGGAGT
CGTGGAGATAAATCAGTGACGATCCAGGCTCCGGGAGAGCCCCTGCTGGACAATGAGTCCACGA
GGGGGGATGAGCGGGATGACAACTGGGGAGAAACAACAACGGTGGTCACAGGCACTTCTGAGCA
CAGTATCTCCCATGATGACCTCACACGCATCGCCAAGGACATGGAGGACAGTGTCCCGTTGGAT
TGTTCCCGCCACCTGGGCGTGGCGGCAGGGGCCATTTTGGCACTGCTCTCTTTTCTCACCCCGC
TGGCTTTCCTGTTGCTGCCTCCACTGCTGTGGCGGGAGGAGCTGGAGCCGTGTGGGACCGCCTG
TGAGGGCCTCTTCATCTCCGTGGCCTTCAAGCTGCTCATCCTGCTGCTGGGCAGCTGGGCTCTG
TTCTTCCGGCGGCCCAAGGCTTCACTGCCCCGAGTCTTCGTGTTACGAGCTCTGCTCATGGTGC
TTGTCTTCCTGCTCGTTATCTCCTACTGGCTCTTCTACGGCGTGCGCATCTTGGACGCCCGGGA
GCGCAGCTACCAGGGCGTGGTTCAGTTTGCCGTTTCGCTAGTGGATGCTTTACTCTTCGTGCAC
TATCTGGCCGTAGTTCTGCTGGAGCTGCGTCAGCTTCAGCCCCAGTTCACGCTCAAGGTCGTGC
GATCCACAGATGGAGCGAGCCGCTTCTATAATGTCGGCCACCTCAGCATCCAGCGAGTGGCAGT
GTGGATCCTGGAGAAGTATTACCATGACTTCCCTGTCTACAACCCCGCCCTCCTCAACCTGCCC
AAGTCCGTCCTGGCCAAGAAAGTGTCTGGCTTCAAGGTGTATTCTCTCGGAGAGGAAAACAGCA
CCAATAACTCCACGGGCCAGTCAAGGGCCGTGATTGCGGCAGCGGCACGGAGGCGCGACAACAG
CCACAATGAGTACTACTACGAGGAAGCCGAACATGAGCGCAGAGTGCGCAAGCGCAGGGCCAGG
CTGGTGGTGGCTGTGGAGGAGGCCTTCACACACATTAAGCGGCTGCAGGAAGAGGAGCAGAAGA
ACCCCAGGGAGGTGATGGACCCCCGGGAAGCAGCCCAAGCCATCTTTGCATCCATGGCCCGAGC
CATGCAGAAGTACCTTCGCACCACGAAACAGCAGCCTTACCACACCATGGAGAGCATCCTTCAG
CACCTGGAGTTCTGCATCACCCACGACATGACACCCAAGGCCTTCCTGGAGCGGTATCTGGCCG
CTGGACCCACCATCCAGTACCACAAGGAACGTTGGCTGGCCAAGCAGTGGACATTGGTGAGCGA
GGAGCCGGTGACCAATGGGCTTAAGGACGGCATTGTTTTCCTCTTAAAGCGCCAGGACTTCAGC
TTGGTGGTGAGCACCAAGAAGGTGCCCTTCTTCAAACTTTCCGAGGAATTCGTGGATCCCAAGT
CACATAAGTTTGTCATGCGGCTGCAGTCGGAGACCTCTGTGTGACTTTGCAGCAGCCCAGAGGG
AGGGATGTGGGGGTTCCTGCGGAGTGGGAGGGGCTTGGTTCTCAGGCCCTGACACATTTCTGCC
ATCCTACTTCCTCTTGCTCTTGCTTTGTTTTGTGTTTTTTTTGTTTTTTTTGTTTTTTTGTTTT
TTACTTGAATTAACTTATCCTGTACCCAGTCTCCTCCCCTATCCCTCAGTTTCCCCATCTGGAA
ATCTGGAGAGAACACCTTGCTTTAACAATACCTGGGAACCATCCTGCCCCCTAATTTTGTATCA
CTCCAGGCCCTGCAGGAAACAGTGCCTAATAACTACCCCCAAACCCCTGTTCTTCCCCCCAGAA
TGTTCCCTGGATGGAAGCCCCTTCCAAACGTGTTCAGGGCCTTCCTGATTGTACCCTTGCCTCC
TGAGCTCCAACTTATAAACGTATGTTCTTAGAGCCATGCTCTCTAGTGGCCCCTGATAGGGTTT
CTCTTGAAGGCACAGCTCTGACCCCAGAGAACCATGGTGCCAAATTCCTGTGGGACAGCAGCTA
ACGCTGTCCCCCATCCTCACCCTTAGCCCCAAGTCTCTGGGCACAATGTACCTGTGACATAGTC
CCAGAGTTAGGATTCTCCTTGTAGTCTTGCTCTCCAGTGTTACAGCTGTAGTTCCTGGTAT

hide sequence

RefSeq Acc Id:

XM_006250276 ⟹ XP_006250338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,621 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,404 (-)	NCBI
Rnor_6.0	13	90,379,203 - 90,405,627 (-)	NCBI
Rnor_5.0	13	94,902,313 - 94,928,719 (-)	NCBI

Sequence:

show sequence

TCCCCCTCTGATCCCCTCCCCCTCCGCCGCCGGCTCCAGATCTGATTCCTGATCCCCGATTGCT
TGGTCCTGGGTCCCGCCATGGGAGCCTGAGCGCCCTGCAGTTCCCCCGGCCCCCTGTCCCCGGG
GCCTCGAGGGGGAAACAGCCGAGTGGTCTGGGACGGAGCCGGGGTGAGCCACCTCAGGAGCCCC
CTCGTCAACCCCCATCGCCCGCGCTGCCGGTTCTGGAGCGCGGAGTTCGGAACGACCCGGTGCG
CTGCGGATACAAAGGCGCGGAGCGGAGCGGGGCGTGCGCCCAGTCCACCCGGCTTTTCGCAGCG
GCGGCTCCCACCTGGGTGCTTCTACTCTGATCCCTGTGCGATTCATCTTCCTGCTTTGCCTCTG
GTCAACCTCCTCTCTCTCTGAGTTGACCCGAAACCTCTCATACTCTACAGAAAATTGGCACAGT
TCAATAGGCTTCCTGATAACCTGCAAATAAAACCGGAACTCTCTGCGTGGCTCCTACAGCTTCT
GATATCCTCCCATTCTGAGCTGTGGAGCTGTCGATTGAATTTCTCCGAGATAAGCCCACTCGTC
CAGCAAAATAGAGTCCCTCAGGGTGACAGTTGACTTCCTAAAGGTGCCTCTTGGCCTGAAGAAG
CCTGTGCTGAAGGAGGTGGCTGTGGGGCCCCCCAAGAGGCCCCAGCCCGCGGCCCTGGAGCGCT
ACAAGGCACGGCGTTCAGACGCCATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTC
GGGCCACTCCCGCAGCTCCAGAAAGCACAGGGACCGCCGGGACCGACACCGCTCTAAGAGCCGG
GATGGGAGTCGTGGAGATAAATCAGTGACGATCCAGGCTCCGGGAGAGCCCCTGCTGGACAATG
AGTCCACGAGGGGGGATGAGCGGGATGACAACTGGGGAGAAACAACAACGGTGGTCACAGGCAC
TTCTGAGCACAGTATCTCCCATGATGACCTCACACGCATCGCCAAGGACATGGAGGACAGTGTC
CCGTTGGATTGTTCCCGCCACCTGGGCGTGGCGGCAGGGGCCATTTTGGCACTGCTCTCTTTTC
TCACCCCGCTGGCTTTCCTGTTGCTGCCTCCACTGCTGTGGCGGGAGGAGCTGGAGCCGTGTGG
GACCGCCTGTGAGGGCCTCTTCATCTCCGTGGCCTTCAAGCTGCTCATCCTGCTGCTGGGCAGC
TGGGCTCTGTTCTTCCGGCGGCCCAAGGCTTCACTGCCCCGAGTCTTCGTGTTACGAGCTCTGC
TCATGGTGCTTGTCTTCCTGCTCGTTATCTCCTACTGGCTCTTCTACGGCGTGCGCATCTTGGA
CGCCCGGGAGCGCAGCTACCAGGGCGTGGTTCAGTTTGCCGTTTCGCTAGTGGATGCTTTACTC
TTCGTGCACTATCTGGCCGTAGTTCTGCTGGAGCTGCGTCAGCTTCAGCCCCAGTTCACGCTCA
AGGTCGTGCGATCCACAGATGGAGCGAGCCGCTTCTATAATGTCGGCCACCTCAGCATCCAGCG
AGTGGCAGTGTGGATCCTGGAGAAGTATTACCATGACTTCCCTGTCTACAACCCCGCCCTCCTC
AACCTGCCCAAGTCCGTCCTGGCCAAGAAAGTGTCTGGCTTCAAGGTGTATTCTCTCGGAGAGG
AAAACAGCACCAATAACTCCACGGGCCAGTCAAGGGCCGTGATTGCGGCAGCGGCACGGAGGCG
CGACAACAGCCACAATGAGTACTACTACGAGGAAGCCGAACATGAGCGCAGAGTGCGCAAGCGC
AGGGCCAGGCTGGTGGTGGCTGTGGAGGAGGCCTTCACACACATTAAGCGGCTGCAGGAAGAGG
AGCAGAAGAACCCCAGGGAGGTGATGGACCCCCGGGAAGCAGCCCAAGCCATCTTTGCATCCAT
GGCCCGAGCCATGCAGAAGTACCTTCGCACCACGAAACAGCAGCCTTACCACACCATGGAGAGC
ATCCTTCAGCACCTGGAGTTCTGCATCACCCACGACATGACACCCAAGGCCTTCCTGGAGCGGT
ATCTGGCCGCTGGACCCACCATCCAGTACCACAAGGAACGTTGGCTGGCCAAGCAGTGGACATT
GGTGAGCGAGGAGCCGGTGACCAATGGGCTTAAGGACGGCATTGTTTTCCTCTTAAAGCGCCAG
GACTTCAGCTTGGTGGTGAGCACCAAGAAGGTGCCCTTCTTCAAACTTTCCGAGGAATTCGTGG
ATCCCAAGTCACATAAGTTTGTCATGCGGCTGCAGTCGGAGACCTCTGTGTGACTTTGCAGCAG
CCCAGAGGGAGGGATGTGGGGGTTCCTGCGGAGTGGGAGGGGCTTGGTTCTCAGGCCCTGACAC
ATTTCTGCCATCCTACTTCCTCTTGCTCTTGCTTTGTTTTGTGTTTTTTTTGTTTTTTTTGTTT
TTTTGTTTTTTACTTGAATTAACTTATCCTGTACCCAGTCTCCTCCCCTATCCCTCAGTTTCCC
CATCTGGAAATCTGGAGAGAACACCTTGCTTTAACAATACCTGGGAACCATCCTGCCCCCTAAT
TTTGTATCACTCCAGGCCCTGCAGGAAACAGTGCCTAATAACTACCCCCAAACCCCTGTTCTTC
CCCCCAGAATGTTCCCTGGATGGAAGCCCCTTCCAAACGTGTTCAGGGCCTTCCTGATTGTACC
CTTGCCTCCTGAGCTCCAACTTATAAACGTATGTTCTTAGAGCCATGCTCTCTAGTGGCCCCTG
ATAGGGTTTCTCTTGAAGGCACAGCTCTGACCCCAGAGAACCATGGTGCCAAATTCCTGTGGGA
CAGCAGCTAACGCTGTCCCCCATCCTCACCCTTAGCCCCAAGTCTCTGGGCACAATGTACCTGT
GACATAGTCCCAGAGTTAGGATTCTCCTTGTAGTCTTGCTCTCCAGTGTTACAGCTGTAGTTCC
TGGTATACACACACACACACACACACACACACACACACACACACACACACACACAGAACAAGGG
GAAGTGTGGTCTTGTACCCAGGAGTCTTTACTGCTGTTTCTGACTTGTATGGTCATGTGATCAT
AGGCAAATGGAGGTAGAACCTCTCTGACCACTTTACTAGGGCTGTGGGGAAGGTATAATGTGTC
TTTCTTTCTTAGACAACTCCTGAGAGGAGGGGCAGGATAGACCCCTGAGGTTGGAGAGACCCAA
TGTCACTGACCCCATCCCTCTGAACTCACCCCATCCTTCTGGGCTGTTCTTCGCTACCCTTACC
CATGAAGGTTGCATGTTGACCTCTTAAGGACTCCATGACATGCAGACCCTGACCAACCTTGGGG
TTGAAGACATTTTCTTTTTTGCACCAGCTACCCGAGTTCCTGCTGAATTCCAGCTCCAGAGACC
TGTGGCCTAAACTCTTCTTATGGGGAGGGGCCAACAGCTCCTTCTCGTCCCCTGCCTTAAATCC
AGTTCTTTGCCTCAGGGGTCTCTTTTCCATGGCCTTGCAGGGTCCCATCCTCTTTTCTCCCCAC
CTCGCTTTCTGAGCTCTGTATCAGGGTGAGGGACCAGGATTACTGCCTTTTGTGGGTATTATCT
TCTCACCCCATTTAAACTAACATAGCCTTTGCAGCAAGTCTGAATCTTGTAAATTTAAAGCTCA
CTTTGAGCAGGATTCACTAACCCTCTAATGGATATCTCCAGAGTAAACTTGAGCCTATAAATCA
GACACCTTTAAATTATTTTTTACCGCAAGGACTGGAAATCGGGAGTACCCACGTCCTTCCTTCT
GGGATCCATGGGGATGACTGGCATGATGGCTGTGATGGAGAGATGCCCCTGTACTGTGTCTGTA
AACAACTCTTAAAGCCCCTGCCCAGGCCCTTCACTTCCCTGGGAATTTCGCTGGTATTTGCTGT
GCTAAGCACACCCGGAGATGGGGGTACCTCTGGTCTCACCGTCAGGCTGTGGGATCCAAAGTGG
GAGCCTACCCCTCCCCCCCAGTTACTAAAGGGCTTGTCCATTAGGGGTGACTTTGTTCTCACAG
GAATGGTCTTTGGAGCTGACTTATGAAGGGCCTCAAGTTTAGCTTAGGGCTGCAGTAGAGGTGC
TGGATAAACTCCAGTGAGATGAATATGTCCTTGGGTAACGGGAAGGTATCTTTTCTTAAAAAAA
AAAAAAAGAAAGAAAGAAAAAAAATGCAGGTTTCCGAGGAGAACCTTTTGAGTCACGTAAATAC
CTCACTATCCTGGAAAGCAGGGCCTGGATAGTGATTGGGGTCATTGCCTTTGTGGGCAAGAATG
GGTTTTGCTGTTGCTTTGAGCAGTGGGTGGGCAGGGTGGGGCGAAGGAATGGATTGGGGGTCTT
AGTTGATGCCCTGGGTTAGGGGCACAGGAGTGTTTATTTTAAGAACCTGCCATGTTTTTTTAAT
CACTGTGATATTTCCATTCCTTTTTCCTAAAACAAAGAGAAGAAGTTCCCCTGACTCCCTGTCT
AAGCACTAAGGGCTGTGACTTAAGAATGGTAGCGTTTGGTCCTTCGTGTCGGAACTGTGGTATC
TTTGTCTACTTTGATCGTTATTATTTTTTTAAATGTCAGGATGAATTGTCAAATGTGTGTGTGT
GCGCGTGTGTGCATGTGCGCGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT
TTTGCTTCTCCAGAACGGGAAGTTGTCTTTATGCTGTGAACTGCAATGGGTGGGCAGCTGACTC
TCTGACTCTCTGAGCAGTTTCCTGAACCAATGCTGTCCCACCACTCACTCGGTTTCTTATGCTT
CCACCGTGGGCATGTGGCTAGCCAGCTCCTCGCTCTCACCGTTGTGTGCTGGGCTACTCCAGTA
CACTCGTTGCTCTGACCGTGTGGCATCCTGTGTCATCCCCACTGCACAACTTGACCTTTGTTTC
CGTGACCTCGGCGCGTGCTTACTGCCCCTTCCTCCCACACCAGGACACCGTGCCTCCGTCCATC
ACCTACCTCGCCACTGTCCCCGTCGGTCCCCTTCCAGTTTCTCCCTAAATGTATGTTTTTGTTC
TTTCTGTTGGTTTTTTATTTACGTCCCTCTAGCCTCCCACTTCCTCCCACTTCCTCCCATCTCT
GCCGATATGCTTTTGTTCCTAGCTGGCCACAGCATTCCTATGGTGAACCCTGATTTAATGAAGG
CACGGAGACAGGATTCTTGGGAGATCCTCACTCCGAATGTCTGTTTCCCAGGGTTCATGCTCTC
CCTGTTGGTTGGGCCTAGCTCTGCCTTGTTCCTTCCTGGTGTCTGTCAGTCTCTTTTCTTTCCT
CTGTCGTCCCACTGGGGCAGCATCTACTGATGGATTCTGTTCTGATCGTGTGATTGTTGTAATT
TGTTCTTCTGTGCGCAAAAGGAAGGGGCTTCTTGACTCTCTTCCAAGTGAGATTGTAGATGTAG
ATTTTCCATTGTTGGATCTAGATTTTTTTTTTTATTCCCTTTTCTTCTCCTTTTTCTTTTTAAT
TTTTTAAATCTTTTTATTTTAAATTTTTTGGGGCTATTTTTTTCCTTTTGGTTCCAGAGCTGAG
ACCTTGTGCATGCATGTAGAAAATTGTAAAATGTAAATTTTTTTTAATATATAAAAAGCTTGTT
TTTACATTTGCGGTGGATTAAACATTATGGCAATTTTAGGGATTTTTTCTTAAACATAGGAACT
AAAACTGTACAAAATTTTTTTTTATATAAAATAAAGACATTTGACTTTG

hide sequence

RefSeq Acc Id:

XM_006250277 ⟹ XP_006250339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,622 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,404 (-)	NCBI
Rnor_6.0	13	90,379,203 - 90,405,627 (-)	NCBI
Rnor_5.0	13	94,902,313 - 94,928,719 (-)	NCBI

Sequence:

show sequence

TCCCCCTCTGATCCCCTCCCCCTCCGCCGCCGGCTCCAGATCTGATTCCTGATCCCCGATTGCT
TGGTCCTGGGTCCCGCCATGGGAGCCTGAGCGCCCTGCAGTTCCCCCGGCCCCCTGTCCCCGGG
GCCTCGAGGGGGAAACAGCCGAGTGGTCTGGGACGGAGCCGGGGTGAGCCACCTCAGGAGCCCC
CTCGTCAACCCCCATCGCCCGCGCTGCCGGTTCTGGAGCGCGGAGTTCGGAACGACCCGGTGCG
CTGCGGATACAAAGGCGCGGAGCGGAGCGGGGCGTGCGCCCAGTCCACCCGGCTTTTCGCAGCG
GCGGGGAGCTGTCGATTGAATTTCTCCGAGATAAGCCCACTCGTCCAGCAAAATAGAGTCCCTC
AGGGTGACAGTTGACTTCCTAAAGGTGCCTCTTGGCCTGAAGAAGCCTGTGCTGAAGGAGGTGG
CTGTGGGGCCCCCCAAGAGGCCCCAGCCCGCGGCCCTGGAGCGCTACAAGGCACGGCGTTCAGA
CGCCATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGCCACTCCCGCAGCTCC
AGAAAGCACAGGGACCGCCGGGACCGACACCGCTCTAAGAGCCGGGATGGGAGTCGTGGAGATA
AATCAGTGACGATCCAGGCTCCGGGAGAGCCCCTGCTGGACAATGAGTCCACGAGGGGGGATGA
GCGGGATGACAACTGGGGAGAAACAACAACGGTGGTCACAGGCACTTCTGAGCACAGTATCTCC
CATGATGACCTCACACGCATCGCCAAGGACATGGAGGACAGTGTCCCGTTGGATTGTTCCCGCC
ACCTGGGCGTGGCGGCAGGGGCCATTTTGGCACTGCTCTCTTTTCTCACCCCGCTGGCTTTCCT
GTTGCTGCCTCCACTGCTGTGGCGGGAGGAGCTGGAGCCGTGTGGGACCGCCTGTGAGGGCCTC
TTCATCTCCGTGGCCTTCAAGCTGCTCATCCTGCTGCTGGGCAGCTGGGCTCTGTTCTTCCGGC
GGCCCAAGGCTTCACTGCCCCGAGTCTTCGTGTTACGAGCTCTGCTCATGGTGCTTGTCTTCCT
GCTCGTTATCTCCTACTGGCTCTTCTACGGCGTGCGCATCTTGGACGCCCGGGAGCGCAGCTAC
CAGGGCGTGGTTCAGTTTGCCGTTTCGCTAGTGGATGCTTTACTCTTCGTGCACTATCTGGCCG
TAGTTCTGCTGGAGCTGCGTCAGCTTCAGCCCCAGTTCACGCTCAAGGTCGTGCGATCCACAGA
TGGAGCGAGCCGCTTCTATAATGTCGGCCACCTCAGCATCCAGCGAGTGGCAGTGTGGATCCTG
GAGAAGTATTACCATGACTTCCCTGTCTACAACCCCGCCCTCCTCAACCTGCCCAAGTCCGTCC
TGGCCAAGAAAGTGTCTGGCTTCAAGGTGTATTCTCTCGGAGAGGAAAACAGCACCAATAACTC
CACGGGCCAGTCAAGGGCCGTGATTGCGGCAGCGGCACGGAGGCGCGACAACAGCCACAATGAG
TACTACTACGAGGAAGCCGAACATGAGCGCAGAGTGCGCAAGCGCAGGGCCAGGCTGGTGGTGG
CTGTGGAGGAGGCCTTCACACACATTAAGCGGCTGCAGGAAGAGGAGCAGAAGAACCCCAGGGA
GGTGATGGACCCCCGGGAAGCAGCCCAAGCCATCTTTGCATCCATGGCCCGAGCCATGCAGAAG
TACCTTCGCACCACGAAACAGCAGCCTTACCACACCATGGAGAGCATCCTTCAGCACCTGGAGT
TCTGCATCACCCACGACATGACACCCAAGGCCTTCCTGGAGCGGTATCTGGCCGCTGGACCCAC
CATCCAGTACCACAAGGAACGTTGGCTGGCCAAGCAGTGGACATTGGTGAGCGAGGAGCCGGTG
ACCAATGGGCTTAAGGACGGCATTGTTTTCCTCTTAAAGCGCCAGGACTTCAGCTTGGTGGTGA
GCACCAAGAAGGTGCCCTTCTTCAAACTTTCCGAGGAATTCGTGGATCCCAAGTCACATAAGTT
TGTCATGCGGCTGCAGTCGGAGACCTCTGTGTGACTTTGCAGCAGCCCAGAGGGAGGGATGTGG
GGGTTCCTGCGGAGTGGGAGGGGCTTGGTTCTCAGGCCCTGACACATTTCTGCCATCCTACTTC
CTCTTGCTCTTGCTTTGTTTTGTGTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTACTTGAAT
TAACTTATCCTGTACCCAGTCTCCTCCCCTATCCCTCAGTTTCCCCATCTGGAAATCTGGAGAG
AACACCTTGCTTTAACAATACCTGGGAACCATCCTGCCCCCTAATTTTGTATCACTCCAGGCCC
TGCAGGAAACAGTGCCTAATAACTACCCCCAAACCCCTGTTCTTCCCCCCAGAATGTTCCCTGG
ATGGAAGCCCCTTCCAAACGTGTTCAGGGCCTTCCTGATTGTACCCTTGCCTCCTGAGCTCCAA
CTTATAAACGTATGTTCTTAGAGCCATGCTCTCTAGTGGCCCCTGATAGGGTTTCTCTTGAAGG
CACAGCTCTGACCCCAGAGAACCATGGTGCCAAATTCCTGTGGGACAGCAGCTAACGCTGTCCC
CCATCCTCACCCTTAGCCCCAAGTCTCTGGGCACAATGTACCTGTGACATAGTCCCAGAGTTAG
GATTCTCCTTGTAGTCTTGCTCTCCAGTGTTACAGCTGTAGTTCCTGGTATACACACACACACA
CACACACACACACACACACACACACACACACACACAGAACAAGGGGAAGTGTGGTCTTGTACCC
AGGAGTCTTTACTGCTGTTTCTGACTTGTATGGTCATGTGATCATAGGCAAATGGAGGTAGAAC
CTCTCTGACCACTTTACTAGGGCTGTGGGGAAGGTATAATGTGTCTTTCTTTCTTAGACAACTC
CTGAGAGGAGGGGCAGGATAGACCCCTGAGGTTGGAGAGACCCAATGTCACTGACCCCATCCCT
CTGAACTCACCCCATCCTTCTGGGCTGTTCTTCGCTACCCTTACCCATGAAGGTTGCATGTTGA
CCTCTTAAGGACTCCATGACATGCAGACCCTGACCAACCTTGGGGTTGAAGACATTTTCTTTTT
TGCACCAGCTACCCGAGTTCCTGCTGAATTCCAGCTCCAGAGACCTGTGGCCTAAACTCTTCTT
ATGGGGAGGGGCCAACAGCTCCTTCTCGTCCCCTGCCTTAAATCCAGTTCTTTGCCTCAGGGGT
CTCTTTTCCATGGCCTTGCAGGGTCCCATCCTCTTTTCTCCCCACCTCGCTTTCTGAGCTCTGT
ATCAGGGTGAGGGACCAGGATTACTGCCTTTTGTGGGTATTATCTTCTCACCCCATTTAAACTA
ACATAGCCTTTGCAGCAAGTCTGAATCTTGTAAATTTAAAGCTCACTTTGAGCAGGATTCACTA
ACCCTCTAATGGATATCTCCAGAGTAAACTTGAGCCTATAAATCAGACACCTTTAAATTATTTT
TTACCGCAAGGACTGGAAATCGGGAGTACCCACGTCCTTCCTTCTGGGATCCATGGGGATGACT
GGCATGATGGCTGTGATGGAGAGATGCCCCTGTACTGTGTCTGTAAACAACTCTTAAAGCCCCT
GCCCAGGCCCTTCACTTCCCTGGGAATTTCGCTGGTATTTGCTGTGCTAAGCACACCCGGAGAT
GGGGGTACCTCTGGTCTCACCGTCAGGCTGTGGGATCCAAAGTGGGAGCCTACCCCTCCCCCCC
AGTTACTAAAGGGCTTGTCCATTAGGGGTGACTTTGTTCTCACAGGAATGGTCTTTGGAGCTGA
CTTATGAAGGGCCTCAAGTTTAGCTTAGGGCTGCAGTAGAGGTGCTGGATAAACTCCAGTGAGA
TGAATATGTCCTTGGGTAACGGGAAGGTATCTTTTCTTAAAAAAAAAAAAAAGAAAGAAAGAAA
AAAAATGCAGGTTTCCGAGGAGAACCTTTTGAGTCACGTAAATACCTCACTATCCTGGAAAGCA
GGGCCTGGATAGTGATTGGGGTCATTGCCTTTGTGGGCAAGAATGGGTTTTGCTGTTGCTTTGA
GCAGTGGGTGGGCAGGGTGGGGCGAAGGAATGGATTGGGGGTCTTAGTTGATGCCCTGGGTTAG
GGGCACAGGAGTGTTTATTTTAAGAACCTGCCATGTTTTTTTAATCACTGTGATATTTCCATTC
CTTTTTCCTAAAACAAAGAGAAGAAGTTCCCCTGACTCCCTGTCTAAGCACTAAGGGCTGTGAC
TTAAGAATGGTAGCGTTTGGTCCTTCGTGTCGGAACTGTGGTATCTTTGTCTACTTTGATCGTT
ATTATTTTTTTAAATGTCAGGATGAATTGTCAAATGTGTGTGTGTGCGCGTGTGTGCATGTGCG
CGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTGCTTCTCCAGAACGGG
AAGTTGTCTTTATGCTGTGAACTGCAATGGGTGGGCAGCTGACTCTCTGACTCTCTGAGCAGTT
TCCTGAACCAATGCTGTCCCACCACTCACTCGGTTTCTTATGCTTCCACCGTGGGCATGTGGCT
AGCCAGCTCCTCGCTCTCACCGTTGTGTGCTGGGCTACTCCAGTACACTCGTTGCTCTGACCGT
GTGGCATCCTGTGTCATCCCCACTGCACAACTTGACCTTTGTTTCCGTGACCTCGGCGCGTGCT
TACTGCCCCTTCCTCCCACACCAGGACACCGTGCCTCCGTCCATCACCTACCTCGCCACTGTCC
CCGTCGGTCCCCTTCCAGTTTCTCCCTAAATGTATGTTTTTGTTCTTTCTGTTGGTTTTTTATT
TACGTCCCTCTAGCCTCCCACTTCCTCCCACTTCCTCCCATCTCTGCCGATATGCTTTTGTTCC
TAGCTGGCCACAGCATTCCTATGGTGAACCCTGATTTAATGAAGGCACGGAGACAGGATTCTTG
GGAGATCCTCACTCCGAATGTCTGTTTCCCAGGGTTCATGCTCTCCCTGTTGGTTGGGCCTAGC
TCTGCCTTGTTCCTTCCTGGTGTCTGTCAGTCTCTTTTCTTTCCTCTGTCGTCCCACTGGGGCA
GCATCTACTGATGGATTCTGTTCTGATCGTGTGATTGTTGTAATTTGTTCTTCTGTGCGCAAAA
GGAAGGGGCTTCTTGACTCTCTTCCAAGTGAGATTGTAGATGTAGATTTTCCATTGTTGGATCT
AGATTTTTTTTTTTATTCCCTTTTCTTCTCCTTTTTCTTTTTAATTTTTTAAATCTTTTTATTT
TAAATTTTTTGGGGCTATTTTTTTCCTTTTGGTTCCAGAGCTGAGACCTTGTGCATGCATGTAG
AAAATTGTAAAATGTAAATTTTTTTTAATATATAAAAAGCTTGTTTTTACATTTGCGGTGGATT
AAACATTATGGCAATTTTAGGGATTTTTTCTTAAACATAGGAACTAAAACTGTACAAAATTTTT
TTTTATATAAAATAAAGACATTTGACTTTG

hide sequence

RefSeq Acc Id:

XM_017598712 ⟹ XP_017454201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,404 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,037 (-)	NCBI
Rnor_6.0	13	90,379,203 - 90,405,045 (-)	NCBI

Sequence:

show sequence

GCCCAGGCCTTAAGAGCCGGGGACTTTCCTGGGCCGGGGGGCCCGGGGCGGGCGCCTGAACGAT
CCCAAGGGAACCCATTGAAGCCGGGAATTGGGAAGCGTGTGTTGGAGGTGGTGGGAGAGGCCGT
GGAAGGATCGGAGGCTGGAGGTATTGGAAGCTGAAGCTCCCACCTGGGTGCTTCTACTCTGATC
CCTGTGCGATTCATCTTCCTGCTTTGCCTCTGGTCAACCTCCTCTCTCTCTGAGTTGACCCGAA
ACCTCTCATACTCTACAGGGAGCTGTCGATTGAATTTCTCCGAGATAAGCCCACTCGTCCAGCA
AAATAGAGTCCCTCAGGGTGACAGTTGACTTCCTAAAGGTGCCTCTTGGCCTGAAGAAGCCTGT
GCTGAAGGAGGTGGCTGTGGGGCCCCCCAAGAGGCCCCAGCCCGCGGCCCTGGAGCGCTACAAG
GCACGGCGTTCAGACGCCATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGCC
ACTCCCGCAGCTCCAGAAAGCACAGGGACCGCCGGGACCGACACCGCTCTAAGAGCCGGGATGG
GAGTCGTGGAGATAAATCAGTGACGATCCAGGCTCCGGGAGAGCCCCTGCTGGACAATGAGTCC
ACGAGGGGGGATGAGCGGGATGACAACTGGGGAGAAACAACAACGGTGGTCACAGGCACTTCTG
AGCACAGTATCTCCCATGATGACCTCACACGCATCGCCAAGGACATGGAGGACAGTGTCCCGTT
GGATTGTTCCCGCCACCTGGGCGTGGCGGCAGGGGCCATTTTGGCACTGCTCTCTTTTCTCACC
CCGCTGGCTTTCCTGTTGCTGCCTCCACTGCTGTGGCGGGAGGAGCTGGAGCCGTGTGGGACCG
CCTGTGAGGGCCTCTTCATCTCCGTGGCCTTCAAGCTGCTCATCCTGCTGCTGGGCAGCTGGGC
TCTGTTCTTCCGGCGGCCCAAGGCTTCACTGCCCCGAGTCTTCGTGTTACGAGCTCTGCTCATG
GTGCTTGTCTTCCTGCTCGTTATCTCCTACTGGCTCTTCTACGGCGTGCGCATCTTGGACGCCC
GGGAGCGCAGCTACCAGGGCGTGGTTCAGTTTGCCGTTTCGCTAGTGGATGCTTTACTCTTCGT
GCACTATCTGGCCGTAGTTCTGCTGGAGCTGCGTCAGCTTCAGCCCCAGTTCACGCTCAAGGTC
GTGCGATCCACAGATGGAGCGAGCCGCTTCTATAATGTCGGCCACCTCAGCATCCAGCGAGTGG
CAGTGTGGATCCTGGAGAAGTATTACCATGACTTCCCTGTCTACAACCCCGCCCTCCTCAACCT
GCCCAAGTCCGTCCTGGCCAAGAAAGTGTCTGGCTTCAAGGTGTATTCTCTCGGAGAGGAAAAC
AGCACCAATAACTCCACGGGCCAGTCAAGGGCCGTGATTGCGGCAGCGGCACGGAGGCGCGACA
ACAGCCACAATGAGTACTACTACGAGGAAGCCGAACATGAGCGCAGAGTGCGCAAGCGCAGGGC
CAGGCTGGTGGTGGCTGTGGAGGAGGCCTTCACACACATTAAGCGGCTGCAGGAAGAGGAGCAG
AAGAACCCCAGGGAGGTGATGGACCCCCGGGAAGCAGCCCAAGCCATCTTTGCATCCATGGCCC
GAGCCATGCAGAAGTACCTTCGCACCACGAAACAGCAGCCTTACCACACCATGGAGAGCATCCT
TCAGCACCTGGAGTTCTGCATCACCCACGACATGACACCCAAGGCCTTCCTGGAGCGGTATCTG
GCCGCTGGACCCACCATCCAGTACCACAAGGAACGTTGGCTGGCCAAGCAGTGGACATTGGTGA
GCGAGGAGCCGGTGACCAATGGGCTTAAGGACGGCATTGTTTTCCTCTTAAAGCGCCAGGACTT
CAGCTTGGTGGTGAGCACCAAGAAGGTGCCCTTCTTCAAACTTTCCGAGGAATTCGTGGATCCC
AAGTCACATAAGTTTGTCATGCGGCTGCAGTCGGAGACCTCTGTGTGACTTTGCAGCAGCCCAG
AGGGAGGGATGTGGGGGTTCCTGCGGAGTGGGAGGGGCTTGGTTCTCAGGCCCTGACACATTTC
TGCCATCCTACTTCCTCTTGCTCTTGCTTTGTTTTGTGTTTTTTTTGTTTTTTTTGTTTTTTTG
TTTTTTACTTGAATTAACTTATCCTGTACCCAGTCTCCTCCCCTATCCCTCAGTTTCCCCATCT
GGAAATCTGGAGAGAACACCTTGCTTTAACAATACCTGGGAACCATCCTGCCCCCTAATTTTGT
ATCACTCCAGGCCCTGCAGGAAACAGTGCCTAATAACTACCCCCAAACCCCTGTTCTTCCCCCC
AGAATGTTCCCTGGATGGAAGCCCCTTCCAAACGTGTTCAGGGCCTTCCTGATTGTACCCTTGC
CTCCTGAGCTCCAACTTATAAACGTATGTTCTTAGAGCCATGCTCTCTAGTGGCCCCTGATAGG
GTTTCTCTTGAAGGCACAGCTCTGACCCCAGAGAACCATGGTGCCAAATTCCTGTGGGACAGCA
GCTAACGCTGTCCCCCATCCTCACCCTTAGCCCCAAGTCTCTGGGCACAATGTACCTGTGACAT
AGTCCCAGAGTTAGGATTCTCCTTGTAGTCTTGCTCTCCAGTGTTACAGCTGTAGTTCCTGGTA
TACACACACACACACACACACACACACACACACACACACACACACACACAGAACAAGGGGAAGT
GTGGTCTTGTACCCAGGAGTCTTTACTGCTGTTTCTGACTTGTATGGTCATGTGATCATAGGCA
AATGGAGGTAGAACCTCTCTGACCACTTTACTAGGGCTGTGGGGAAGGTATAATGTGTCTTTCT
TTCTTAGACAACTCCTGAGAGGAGGGGCAGGATAGACCCCTGAGGTTGGAGAGACCCAATGTCA
CTGACCCCATCCCTCTGAACTCACCCCATCCTTCTGGGCTGTTCTTCGCTACCCTTACCCATGA
AGGTTGCATGTTGACCTCTTAAGGACTCCATGACATGCAGACCCTGACCAACCTTGGGGTTGAA
GACATTTTCTTTTTTGCACCAGCTACCCGAGTTCCTGCTGAATTCCAGCTCCAGAGACCTGTGG
CCTAAACTCTTCTTATGGGGAGGGGCCAACAGCTCCTTCTCGTCCCCTGCCTTAAATCCAGTTC
TTTGCCTCAGGGGTCTCTTTTCCATGGCCTTGCAGGGTCCCATCCTCTTTTCTCCCCACCTCGC
TTTCTGAGCTCTGTATCAGGGTGAGGGACCAGGATTACTGCCTTTTGTGGGTATTATCTTCTCA
CCCCATTTAAACTAACATAGCCTTTGCAGCAAGTCTGAATCTTGTAAATTTAAAGCTCACTTTG
AGCAGGATTCACTAACCCTCTAATGGATATCTCCAGAGTAAACTTGAGCCTATAAATCAGACAC
CTTTAAATTATTTTTTACCGCAAGGACTGGAAATCGGGAGTACCCACGTCCTTCCTTCTGGGAT
CCATGGGGATGACTGGCATGATGGCTGTGATGGAGAGATGCCCCTGTACTGTGTCTGTAAACAA
CTCTTAAAGCCCCTGCCCAGGCCCTTCACTTCCCTGGGAATTTCGCTGGTATTTGCTGTGCTAA
GCACACCCGGAGATGGGGGTACCTCTGGTCTCACCGTCAGGCTGTGGGATCCAAAGTGGGAGCC
TACCCCTCCCCCCCAGTTACTAAAGGGCTTGTCCATTAGGGGTGACTTTGTTCTCACAGGAATG
GTCTTTGGAGCTGACTTATGAAGGGCCTCAAGTTTAGCTTAGGGCTGCAGTAGAGGTGCTGGAT
AAACTCCAGTGAGATGAATATGTCCTTGGGTAACGGGAAGGTATCTTTTCTTAAAAAAAAAAAA
AAGAAAGAAAGAAAAAAAATGCAGGTTTCCGAGGAGAACCTTTTGAGTCACGTAAATACCTCAC
TATCCTGGAAAGCAGGGCCTGGATAGTGATTGGGGTCATTGCCTTTGTGGGCAAGAATGGGTTT
TGCTGTTGCTTTGAGCAGTGGGTGGGCAGGGTGGGGCGAAGGAATGGATTGGGGGTCTTAGTTG
ATGCCCTGGGTTAGGGGCACAGGAGTGTTTATTTTAAGAACCTGCCATGTTTTTTTAATCACTG
TGATATTTCCATTCCTTTTTCCTAAAACAAAGAGAAGAAGTTCCCCTGACTCCCTGTCTAAGCA
CTAAGGGCTGTGACTTAAGAATGGTAGCGTTTGGTCCTTCGTGTCGGAACTGTGGTATCTTTGT
CTACTTTGATCGTTATTATTTTTTTAAATGTCAGGATGAATTGTCAAATGTGTGTGTGTGCGCG
TGTGTGCATGTGCGCGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTGC
TTCTCCAGAACGGGAAGTTGTCTTTATGCTGTGAACTGCAATGGGTGGGCAGCTGACTCTCTGA
CTCTCTGAGCAGTTTCCTGAACCAATGCTGTCCCACCACTCACTCGGTTTCTTATGCTTCCACC
GTGGGCATGTGGCTAGCCAGCTCCTCGCTCTCACCGTTGTGTGCTGGGCTACTCCAGTACACTC
GTTGCTCTGACCGTGTGGCATCCTGTGTCATCCCCACTGCACAACTTGACCTTTGTTTCCGTGA
CCTCGGCGCGTGCTTACTGCCCCTTCCTCCCACACCAGGACACCGTGCCTCCGTCCATCACCTA
CCTCGCCACTGTCCCCGTCGGTCCCCTTCCAGTTTCTCCCTAAATGTATGTTTTTGTTCTTTCT
GTTGGTTTTTTATTTACGTCCCTCTAGCCTCCCACTTCCTCCCACTTCCTCCCATCTCTGCCGA
TATGCTTTTGTTCCTAGCTGGCCACAGCATTCCTATGGTGAACCCTGATTTAATGAAGGCACGG
AGACAGGATTCTTGGGAGATCCTCACTCCGAATGTCTGTTTCCCAGGGTTCATGCTCTCCCTGT
TGGTTGGGCCTAGCTCTGCCTTGTTCCTTCCTGGTGTCTGTCAGTCTCTTTTCTTTCCTCTGTC
GTCCCACTGGGGCAGCATCTACTGATGGATTCTGTTCTGATCGTGTGATTGTTGTAATTTGTTC
TTCTGTGCGCAAAAGGAAGGGGCTTCTTGACTCTCTTCCAAGTGAGATTGTAGATGTAGATTTT
CCATTGTTGGATCTAGATTTTTTTTTTTATTCCCTTTTCTTCTCCTTTTTCTTTTTAATTTTTT
AAATCTTTTTATTTTAAATTTTTTGGGGCTATTTTTTTCCTTTTGGTTCCAGAGCTGAGACCTT
GTGCATGCATGTAGAAAATTGTAAAATGTAAATTTTTTTTAATATATAAAAAGCTTGTTTTTAC
ATTTGCGGTGGATTAAACATTATGGCAATTTTAGGGATTTTTTCTTAAACATAGGAACTAAAAC
TGTACAAAATTTTTTTTTATATAAAATAAAGACATTTGACTTTG

hide sequence

RefSeq Acc Id:

XM_017598713 ⟹ XP_017454202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,616 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,404 (-)	NCBI
Rnor_6.0	13	90,379,203 - 90,405,627 (-)	NCBI

Sequence:

show sequence

TCCCCCTCTGATCCCCTCCCCCTCCGCCGCCGGCTCCAGATCTGATTCCTGATCCCCGATTGCT
TGGTCCTGGGTCCCGCCATGGGAGCCTGAGCGCCCTGCAGTTCCCCCGGCCCCCTGTCCCCGGG
GCCTCGAGGGGGAAACAGCCGAGTGGTCTGGGACGGAGCCGGGGTGAGCCACCTCAGGAGCCCC
CTCGTCAACCCCCATCGCCCGCGCTGCCGGTTCTGGAGCGCGGAGTTCGGAACGACCCGGTGCG
CTGCGGATACAAAGGCGCGGAGCGGAGCGGGGCGTGCGCCCAGTCCACCCGGCTTTTCGCAGCG
GCGGAAAATTGGCACAGTTCAATAGGCTTCCTGATAACCTGCAAATAAAACCGGAACTCTCTGC
GTGGCTCCTACAGCTTCTGATATCCTCCCATTCTGAGCTGTGGAGCTGTCGATTGAATTTCTCC
GAGATAAGCCCACTCGTCCAGCAAAATAGAGTCCCTCAGGGTGACAGTTGACTTCCTAAAGGTG
CCTCTTGGCCTGAAGAAGCCTGTGCTGAAGGAGGTGGCTGTGGGGCCCCCCAAGAGGCCCCAGC
CCGCGGCCCTGGAGCGCTACAAGGCACGGCGTTCAGACGCCATGGACACCGAGTCCCAGTACTC
GGGCTATTCCTACAAGTCGGGCCACTCCCGCAGCTCCAGAAAGCACAGGGACCGCCGGGACCGA
CACCGCTCTAAGAGCCGGGATGGGAGTCGTGGAGATAAATCAGTGACGATCCAGGCTCCGGGAG
AGCCCCTGCTGGACAATGAGTCCACGAGGGGGGATGAGCGGGATGACAACTGGGGAGAAACAAC
AACGGTGGTCACAGGCACTTCTGAGCACAGTATCTCCCATGATGACCTCACACGCATCGCCAAG
GACATGGAGGACAGTGTCCCGTTGGATTGTTCCCGCCACCTGGGCGTGGCGGCAGGGGCCATTT
TGGCACTGCTCTCTTTTCTCACCCCGCTGGCTTTCCTGTTGCTGCCTCCACTGCTGTGGCGGGA
GGAGCTGGAGCCGTGTGGGACCGCCTGTGAGGGCCTCTTCATCTCCGTGGCCTTCAAGCTGCTC
ATCCTGCTGCTGGGCAGCTGGGCTCTGTTCTTCCGGCGGCCCAAGGCTTCACTGCCCCGAGTCT
TCGTGTTACGAGCTCTGCTCATGGTGCTTGTCTTCCTGCTCGTTATCTCCTACTGGCTCTTCTA
CGGCGTGCGCATCTTGGACGCCCGGGAGCGCAGCTACCAGGGCGTGGTTCAGTTTGCCGTTTCG
CTAGTGGATGCTTTACTCTTCGTGCACTATCTGGCCGTAGTTCTGCTGGAGCTGCGTCAGCTTC
AGCCCCAGTTCACGCTCAAGGTCGTGCGATCCACAGATGGAGCGAGCCGCTTCTATAATGTCGG
CCACCTCAGCATCCAGCGAGTGGCAGTGTGGATCCTGGAGAAGTATTACCATGACTTCCCTGTC
TACAACCCCGCCCTCCTCAACCTGCCCAAGTCCGTCCTGGCCAAGAAAGTGTCTGGCTTCAAGG
TGTATTCTCTCGGAGAGGAAAACAGCACCAATAACTCCACGGGCCAGTCAAGGGCCGTGATTGC
GGCAGCGGCACGGAGGCGCGACAACAGCCACAATGAGTACTACTACGAGGAAGCCGAACATGAG
CGCAGAGTGCGCAAGCGCAGGGCCAGGCTGGTGGTGGCTGTGGAGGAGGCCTTCACACACATTA
AGCGGCTGCAGGAAGAGGAGCAGAAGAACCCCAGGGAGGTGATGGACCCCCGGGAAGCAGCCCA
AGCCATCTTTGCATCCATGGCCCGAGCCATGCAGAAGTACCTTCGCACCACGAAACAGCAGCCT
TACCACACCATGGAGAGCATCCTTCAGCACCTGGAGTTCTGCATCACCCACGACATGACACCCA
AGGCCTTCCTGGAGCGGTATCTGGCCGCTGGACCCACCATCCAGTACCACAAGGAACGTTGGCT
GGCCAAGCAGTGGACATTGGTGAGCGAGGAGCCGGTGACCAATGGGCTTAAGGACGGCATTGTT
TTCCTCTTAAAGCGCCAGGACTTCAGCTTGGTGGTGAGCACCAAGAAGGTGCCCTTCTTCAAAC
TTTCCGAGGAATTCGTGGATCCCAAGTCACATAAGTTTGTCATGCGGCTGCAGTCGGAGACCTC
TGTGTGACTTTGCAGCAGCCCAGAGGGAGGGATGTGGGGGTTCCTGCGGAGTGGGAGGGGCTTG
GTTCTCAGGCCCTGACACATTTCTGCCATCCTACTTCCTCTTGCTCTTGCTTTGTTTTGTGTTT
TTTTTGTTTTTTTTGTTTTTTTGTTTTTTACTTGAATTAACTTATCCTGTACCCAGTCTCCTCC
CCTATCCCTCAGTTTCCCCATCTGGAAATCTGGAGAGAACACCTTGCTTTAACAATACCTGGGA
ACCATCCTGCCCCCTAATTTTGTATCACTCCAGGCCCTGCAGGAAACAGTGCCTAATAACTACC
CCCAAACCCCTGTTCTTCCCCCCAGAATGTTCCCTGGATGGAAGCCCCTTCCAAACGTGTTCAG
GGCCTTCCTGATTGTACCCTTGCCTCCTGAGCTCCAACTTATAAACGTATGTTCTTAGAGCCAT
GCTCTCTAGTGGCCCCTGATAGGGTTTCTCTTGAAGGCACAGCTCTGACCCCAGAGAACCATGG
TGCCAAATTCCTGTGGGACAGCAGCTAACGCTGTCCCCCATCCTCACCCTTAGCCCCAAGTCTC
TGGGCACAATGTACCTGTGACATAGTCCCAGAGTTAGGATTCTCCTTGTAGTCTTGCTCTCCAG
TGTTACAGCTGTAGTTCCTGGTATACACACACACACACACACACACACACACACACACACACAC
ACACACACAGAACAAGGGGAAGTGTGGTCTTGTACCCAGGAGTCTTTACTGCTGTTTCTGACTT
GTATGGTCATGTGATCATAGGCAAATGGAGGTAGAACCTCTCTGACCACTTTACTAGGGCTGTG
GGGAAGGTATAATGTGTCTTTCTTTCTTAGACAACTCCTGAGAGGAGGGGCAGGATAGACCCCT
GAGGTTGGAGAGACCCAATGTCACTGACCCCATCCCTCTGAACTCACCCCATCCTTCTGGGCTG
TTCTTCGCTACCCTTACCCATGAAGGTTGCATGTTGACCTCTTAAGGACTCCATGACATGCAGA
CCCTGACCAACCTTGGGGTTGAAGACATTTTCTTTTTTGCACCAGCTACCCGAGTTCCTGCTGA
ATTCCAGCTCCAGAGACCTGTGGCCTAAACTCTTCTTATGGGGAGGGGCCAACAGCTCCTTCTC
GTCCCCTGCCTTAAATCCAGTTCTTTGCCTCAGGGGTCTCTTTTCCATGGCCTTGCAGGGTCCC
ATCCTCTTTTCTCCCCACCTCGCTTTCTGAGCTCTGTATCAGGGTGAGGGACCAGGATTACTGC
CTTTTGTGGGTATTATCTTCTCACCCCATTTAAACTAACATAGCCTTTGCAGCAAGTCTGAATC
TTGTAAATTTAAAGCTCACTTTGAGCAGGATTCACTAACCCTCTAATGGATATCTCCAGAGTAA
ACTTGAGCCTATAAATCAGACACCTTTAAATTATTTTTTACCGCAAGGACTGGAAATCGGGAGT
ACCCACGTCCTTCCTTCTGGGATCCATGGGGATGACTGGCATGATGGCTGTGATGGAGAGATGC
CCCTGTACTGTGTCTGTAAACAACTCTTAAAGCCCCTGCCCAGGCCCTTCACTTCCCTGGGAAT
TTCGCTGGTATTTGCTGTGCTAAGCACACCCGGAGATGGGGGTACCTCTGGTCTCACCGTCAGG
CTGTGGGATCCAAAGTGGGAGCCTACCCCTCCCCCCCAGTTACTAAAGGGCTTGTCCATTAGGG
GTGACTTTGTTCTCACAGGAATGGTCTTTGGAGCTGACTTATGAAGGGCCTCAAGTTTAGCTTA
GGGCTGCAGTAGAGGTGCTGGATAAACTCCAGTGAGATGAATATGTCCTTGGGTAACGGGAAGG
TATCTTTTCTTAAAAAAAAAAAAAAGAAAGAAAGAAAAAAAATGCAGGTTTCCGAGGAGAACCT
TTTGAGTCACGTAAATACCTCACTATCCTGGAAAGCAGGGCCTGGATAGTGATTGGGGTCATTG
CCTTTGTGGGCAAGAATGGGTTTTGCTGTTGCTTTGAGCAGTGGGTGGGCAGGGTGGGGCGAAG
GAATGGATTGGGGGTCTTAGTTGATGCCCTGGGTTAGGGGCACAGGAGTGTTTATTTTAAGAAC
CTGCCATGTTTTTTTAATCACTGTGATATTTCCATTCCTTTTTCCTAAAACAAAGAGAAGAAGT
TCCCCTGACTCCCTGTCTAAGCACTAAGGGCTGTGACTTAAGAATGGTAGCGTTTGGTCCTTCG
TGTCGGAACTGTGGTATCTTTGTCTACTTTGATCGTTATTATTTTTTTAAATGTCAGGATGAAT
TGTCAAATGTGTGTGTGTGCGCGTGTGTGCATGTGCGCGCGTGTGCGTGCGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTCTTTTGCTTCTCCAGAACGGGAAGTTGTCTTTATGCTGTGAACTGCAA
TGGGTGGGCAGCTGACTCTCTGACTCTCTGAGCAGTTTCCTGAACCAATGCTGTCCCACCACTC
ACTCGGTTTCTTATGCTTCCACCGTGGGCATGTGGCTAGCCAGCTCCTCGCTCTCACCGTTGTG
TGCTGGGCTACTCCAGTACACTCGTTGCTCTGACCGTGTGGCATCCTGTGTCATCCCCACTGCA
CAACTTGACCTTTGTTTCCGTGACCTCGGCGCGTGCTTACTGCCCCTTCCTCCCACACCAGGAC
ACCGTGCCTCCGTCCATCACCTACCTCGCCACTGTCCCCGTCGGTCCCCTTCCAGTTTCTCCCT
AAATGTATGTTTTTGTTCTTTCTGTTGGTTTTTTATTTACGTCCCTCTAGCCTCCCACTTCCTC
CCACTTCCTCCCATCTCTGCCGATATGCTTTTGTTCCTAGCTGGCCACAGCATTCCTATGGTGA
ACCCTGATTTAATGAAGGCACGGAGACAGGATTCTTGGGAGATCCTCACTCCGAATGTCTGTTT
CCCAGGGTTCATGCTCTCCCTGTTGGTTGGGCCTAGCTCTGCCTTGTTCCTTCCTGGTGTCTGT
CAGTCTCTTTTCTTTCCTCTGTCGTCCCACTGGGGCAGCATCTACTGATGGATTCTGTTCTGAT
CGTGTGATTGTTGTAATTTGTTCTTCTGTGCGCAAAAGGAAGGGGCTTCTTGACTCTCTTCCAA
GTGAGATTGTAGATGTAGATTTTCCATTGTTGGATCTAGATTTTTTTTTTTATTCCCTTTTCTT
CTCCTTTTTCTTTTTAATTTTTTAAATCTTTTTATTTTAAATTTTTTGGGGCTATTTTTTTCCT
TTTGGTTCCAGAGCTGAGACCTTGTGCATGCATGTAGAAAATTGTAAAATGTAAATTTTTTTTA
ATATATAAAAAGCTTGTTTTTACATTTGCGGTGGATTAAACATTATGGCAATTTTAGGGATTTT
TTCTTAAACATAGGAACTAAAACTGTACAAAATTTTTTTTTATATAAAATAAAGACATTTGACT
TTG

hide sequence

RefSeq Acc Id:

XM_039090512 ⟹ XP_038946440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,284 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,037 (-)	NCBI

RefSeq Acc Id:

XM_039090513 ⟹ XP_038946441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,011,279 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,478,875 (-)	NCBI

RefSeq Acc Id:

XM_039090514 ⟹ XP_038946442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,995,124 - 87,021,284 (-)	NCBI
mRatBN7.2	13	84,462,731 - 84,489,037 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099439	(Get FASTA)	NCBI Sequence Viewer
	XP_006250338	(Get FASTA)	NCBI Sequence Viewer
	XP_006250339	(Get FASTA)	NCBI Sequence Viewer
	XP_017454201	(Get FASTA)	NCBI Sequence Viewer
	XP_017454202	(Get FASTA)	NCBI Sequence Viewer
	XP_038946440	(Get FASTA)	NCBI Sequence Viewer
	XP_038946441	(Get FASTA)	NCBI Sequence Viewer
	XP_038946442	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94669	(Get FASTA)	NCBI Sequence Viewer
	EDL94670	(Get FASTA)	NCBI Sequence Viewer
	EDL94671	(Get FASTA)	NCBI Sequence Viewer
	EDL94672	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006849
	ENSRNOP00000006849.5
GenBank Protein	P84889	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099439 ⟸ NM_001105969

- UniProtKB:

P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDER
DDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLL
LPPLLWREELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLL
VISYWLFYGVRILDARERSYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDG
ASRFYNVGHLSIQRVAVWILEKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNST
GQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREV
MDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLAAGPTI
QYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKSHKFV
MRLQSETSV

hide sequence

RefSeq Acc Id:	XP_006250339 ⟸ XM_006250277
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDER DDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLL LPPLLWREELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLL VISYWLFYGVRILDARERSYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDG ASRFYNVGHLSIQRVAVWILEKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNST GQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREV MDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLAAGPTI QYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKSHKFV MRLQSETSV hide sequence

RefSeq Acc Id:	XP_006250338 ⟸ XM_006250276
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDER DDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLL LPPLLWREELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLL VISYWLFYGVRILDARERSYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDG ASRFYNVGHLSIQRVAVWILEKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNST GQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREV MDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLAAGPTI QYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKSHKFV MRLQSETSV hide sequence

RefSeq Acc Id:	XP_017454202 ⟸ XM_017598713
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDER DDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLL LPPLLWREELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLL VISYWLFYGVRILDARERSYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDG ASRFYNVGHLSIQRVAVWILEKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNST GQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREV MDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLAAGPTI QYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKSHKFV MRLQSETSV hide sequence

RefSeq Acc Id:	XP_017454201 ⟸ XM_017598712
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDER DDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLDCSRHLGVAAGAILALLSFLTPLAFLL LPPLLWREELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALLMVLVFLL VISYWLFYGVRILDARERSYQGVVQFAVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDG ASRFYNVGHLSIQRVAVWILEKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNST GQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREV MDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLAAGPTI QYHKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKSHKFV MRLQSETSV hide sequence

Ensembl Acc Id:

ENSRNOP00000006849 ⟸ ENSRNOT00000006849

Ensembl Acc Id:

ENSRNOP00000072619 ⟸ ENSRNOT00000091710

RefSeq Acc Id:	XP_038946442 ⟸ XM_039090514
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946440 ⟸ XM_039090512
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946441 ⟸ XM_039090513
- Peptide Label:	isoform X1
- UniProtKB:	P84889 (UniProtKB/Swiss-Prot), A6JG15 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P84889-F1-model_v2	AlphaFold	P84889	1-521	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309442	AgrOrtholog
BioCyc Gene	G2FUF-17335	BioCyc
Ensembl Genes	ENSRNOG00000004889	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006849	ENTREZGENE
	ENSRNOT00000006849.6	UniProtKB/Swiss-Prot
InterPro	VANGL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:289229	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	289229	ENTREZGENE
PANTHER	PTHR20886	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Strabismus	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Vangl2	PhenoGen
PIRSF	Strabismus	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004889	RatGTEx
UniProt	A6JG15	ENTREZGENE, UniProtKB/TrEMBL
	P84889	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-03-20	Vangl2	VANGL planar cell polarity protein 2	Vangl2	vang-like 2 (van gogh, Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Vangl2	vang-like 2 (van gogh, Drosophila)	Vangl2_predicted	vang-like 2 (van gogh, Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Vangl2_predicted	vang-like 2 (van gogh, Drosophila) (predicted)	Ltap_predicted	loop tail associated protein (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Ltap_predicted	loop tail associated protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)