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ONTOLOGY REPORT - ANNOTATIONS


Term:telencephalon regionalization
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Accession:GO:0021978 term browser browse the term
Definition:The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops.


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telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96785 (MGI:2154554|PMID:11719201)
Ensembl
RGD
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96785 (MGI:2154554|PMID:11719201), (MGI:3640853|PMID:16855091)
Ensembl
RGD
PMID:11719201 PMID:16855091 GO_REF:0000107 MGI:2154554 MGI:3640853 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:3838261 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1890208|MGI:88177|MGI:88180 (MGI:2154554|PMID:11719201)
Ensembl
RGD
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753|MGI:3665330 (MGI:5689191|PMID:26166575) RGD PMID:26166575 MGI:5689191 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155 (MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:3838261 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
MGI:1857796 (MGI:1926244|PMID:11060228)
GO_REF:0000107
RGD
Ensembl
PMID:11060228, PMID:9811591 GO_REF:0000107 MGI:1926244, RGD:2306311 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:3813369|PMID:18694563) RGD PMID:18694563 MGI:3813369 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5566553|PMID:24531968)
Ensembl
RGD
PMID:24531968 GO_REF:0000107 MGI:5566553 NCBI chr19:10,423,534...10,460,674
Ensembl chr19:10,423,501...10,460,674
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:5486528 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO MGI:5527461 (MGI:5524255|PMID:23056351), (MGI:5605467|PMID:22923088) RGD PMID:22923088 PMID:23056351 MGI:5524255 MGI:5605467 NCBI chr 5:129,754,295...129,760,045
Ensembl chr 5:129,756,149...129,758,986
JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:95388 (MGI:3043493|PMID:15147765) RGD PMID:15147765 MGI:3043493 NCBI chr 4:116,967,646...116,984,136
Ensembl chr 4:116,968,000...116,985,551
JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858|MGI:95387 (MGI:3043493|PMID:15147765), (MGI:3606726|PMID:12764040) RGD PMID:12764040 PMID:15147765 MGI:3043493 MGI:3606726 NCBI chr 1:280,633,938...280,640,946
Ensembl chr 1:280,633,938...280,640,946
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:2176173|MGI:3802572 (MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:5486528 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:3521756 (MGI:3763674|PMID:17828260) RGD PMID:17828260 MGI:3763674 NCBI chr 2:5,569,954...5,579,894
Ensembl chr 2:5,569,935...5,579,894
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856155 (MGI:3606726|PMID:12764040), (MGI:5486528|PMID:23431145)
Ensembl
RGD
PMID:12764040 PMID:23431145 GO_REF:0000107 MGI:3606726 MGI:5486528 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO MGI:2176173|MGI:4450919 (MGI:5584349|PMID:24586484) RGD PMID:24586484 MGI:5584349 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    multicellular organismal process 8912
      pattern specification process 492
        regionalization 386
          telencephalon regionalization 16
            cerebral cortex regionalization 9
Path 2
Term Annotations click to browse term
  biological_process 19633
    developmental process 6782
      anatomical structure development 6259
        multicellular organism development 5740
          system development 5283
            nervous system development 2717
              central nervous system development 1267
                brain development 971
                  forebrain development 509
                    telencephalon development 341
                      telencephalon regionalization 16
                        cerebral cortex regionalization 9
paths to the root