Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Endometrial Neoplasms | | ISO | SEMA3F (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21933904 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Endometrial Neoplasms | | ISO | SEMA3F (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21933904 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Evidence that Sema3A and Sema3F regulate the migration of GABAergic neurons in the developing neocortex. | Tamamaki N, etal., J Comp Neurol 2003 Jan 6;455(2):238-48. |
PMID:9753685 | PMID:11683995 | PMID:12435358 | PMID:15814794 | PMID:15967098 | PMID:16258027 | PMID:16319111 | PMID:17395160 | PMID:18041777 | PMID:18804103 | PMID:19386662 | PMID:20010807 |
PMID:20298787 | PMID:21724473 | PMID:22790009 | PMID:22977659 | PMID:23063687 | PMID:24006456 | PMID:25143608 | PMID:27309587 |
Sema3f (Rattus norvegicus - Norway rat) |
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SEMA3F (Homo sapiens - human) |
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Sema3f (Mus musculus - house mouse) |
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Sema3f (Chinchilla lanigera - long-tailed chinchilla) |
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SEMA3F (Pan paniscus - bonobo/pygmy chimpanzee) |
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SEMA3F (Canis lupus familiaris - dog) |
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Sema3f (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SEMA3F (Sus scrofa - pig) |
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SEMA3F (Chlorocebus sabaeus - green monkey) |
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Sema3f (Heterocephalus glaber - naked mole-rat) |
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Variants in Sema3f
78 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH133726 |
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D3S4520 |
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D3S4519 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 4 | 4 | 4 | 47 | 20 | 31 | 11 | |||||
Low | 3 | 41 | 51 | 35 | 19 | 35 | 8 | 11 | 27 | 15 | 10 | 8 | |
Below cutoff | 2 | 2 | 2 |
RefSeq Transcripts | NM_001413830 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006243778 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008766532 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595691 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595692 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595693 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595694 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595695 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081588 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063265627 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005487846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005487847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000024193 ⟹ ENSRNOP00000024193 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000085915 ⟹ ENSRNOP00000071565 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001413830 ⟹ NP_001400759 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039081588 ⟹ XP_038937516 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039081590 ⟹ XP_038937518 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039081591 ⟹ XP_038937519 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039081592 ⟹ XP_038937520 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039081593 ⟹ XP_038937521 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063265627 ⟹ XP_063121697 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005487846 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XR_005487847 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001400759 | (Get FASTA) | NCBI Sequence Viewer |
XP_038937516 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937518 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937519 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937520 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937521 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063121697 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL77218 | (Get FASTA) | NCBI Sequence Viewer |
EDL77219 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000024193 | ||
ENSRNOP00000024193.5 | |||
ENSRNOP00000071565.2 |
RefSeq Acc Id: | ENSRNOP00000024193 ⟸ ENSRNOT00000024193 |
RefSeq Acc Id: | ENSRNOP00000071565 ⟸ ENSRNOT00000085915 |
RefSeq Acc Id: | XP_038937516 ⟸ XM_039081588 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038937520 ⟸ XM_039081592 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038937518 ⟸ XM_039081590 |
- Peptide Label: | isoform X2 |
- UniProtKB: | D3ZGX9 (UniProtKB/TrEMBL), A6I309 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038937519 ⟸ XM_039081591 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038937521 ⟸ XM_039081593 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | NP_001400759 ⟸ NM_001413830 |
- Peptide Label: | precursor |
- UniProtKB: | D3ZGX9 (UniProtKB/TrEMBL), A6I309 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063121697 ⟸ XM_063265627 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A0G2K0S6 (UniProtKB/TrEMBL), A6I308 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2K0S6-F1-model_v2 | AlphaFold | A0A0G2K0S6 | 1-802 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1308514 | AgrOrtholog |
BioCyc Gene | G2FUF-29177 | BioCyc |
Ensembl Genes | ENSRNOG00000017704 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000024193 | ENTREZGENE |
ENSRNOT00000024193.6 | UniProtKB/TrEMBL | |
ENSRNOT00000085915.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.130.10.10 | UniProtKB/TrEMBL |
2.60.40.10 | UniProtKB/TrEMBL | |
ligand-binding face of the semaphorins, domain 2 | UniProtKB/TrEMBL | |
InterPro | Ig-like | UniProtKB/TrEMBL |
Ig-like_dom_sf | UniProtKB/TrEMBL | |
Ig-like_fold | UniProtKB/TrEMBL | |
Ig_sub | UniProtKB/TrEMBL | |
Ig_sub2 | UniProtKB/TrEMBL | |
Plexin-like_fold | UniProtKB/TrEMBL | |
Semap_dom_sf | UniProtKB/TrEMBL | |
Semaphorin | UniProtKB/TrEMBL | |
Semaphorin/CD100_Ag | UniProtKB/TrEMBL | |
WD40/YVTN_repeat-like_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:315996 | UniProtKB/TrEMBL |
NCBI Gene | 315996 | ENTREZGENE |
PANTHER | PTHR11036 | UniProtKB/TrEMBL |
SEMAPHORIN-3F | UniProtKB/TrEMBL | |
Pfam | Sema | UniProtKB/TrEMBL |
PhenoGen | Sema3f | PhenoGen |
PROSITE | IG_LIKE | UniProtKB/TrEMBL |
SEMA | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000017704 | RatGTEx |
SMART | IGc2 | UniProtKB/TrEMBL |
PSI | UniProtKB/TrEMBL | |
Sema | UniProtKB/TrEMBL | |
SM00409 | UniProtKB/TrEMBL | |
Superfamily-SCOP | Plexin repeat | UniProtKB/TrEMBL |
Sema | UniProtKB/TrEMBL | |
SSF48726 | UniProtKB/TrEMBL | |
UniProt | A0A0G2K0S6 | ENTREZGENE, UniProtKB/TrEMBL |
A6I308 | ENTREZGENE, UniProtKB/TrEMBL | |
A6I309 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZGX9 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-01-21 | Sema3f | semaphorin 3F | Sema3f | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Sema3f | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F | Sema3f_predicted | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Sema3f_predicted | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |