Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F) - Rat Genome Database
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Gene: Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F) Mus musculus
Analyze
Symbol: Sema3f
Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
RGD ID: 1318328
MGI Page MGI
Description: Exhibits chemorepellent activity. Involved in several processes, including nervous system development; regulation of postsynapse organization; and ventral trunk neural crest cell migration. Localizes to glutamatergic synapse. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human SEMA3F (semaphorin 3F); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Sem; Sema4; Semak; semaphorin IV; semaphorin-3F
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,558,698 - 107,587,674 (-)NCBIGRCm39mm39
GRCm389107,681,499 - 107,710,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,681,500 - 107,710,475 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,583,833 - 107,612,806 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,539,603 - 107,568,576 (-)NCBImm8
Celera9107,287,142 - 107,316,223 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9753670   PMID:9753685   PMID:9875739   PMID:10349636   PMID:10707970   PMID:11042159   PMID:11074448   PMID:11076861   PMID:11217851   PMID:11231073   PMID:11442635   PMID:11486090  
PMID:11683995   PMID:12435358   PMID:12477932   PMID:12890759   PMID:14516677   PMID:14572462   PMID:15051154   PMID:15121176   PMID:15226823   PMID:15239958   PMID:15386596   PMID:15473965  
PMID:15483127   PMID:15489334   PMID:15814792   PMID:15814794   PMID:15869472   PMID:16141072   PMID:16141073   PMID:16202709   PMID:16284245   PMID:16319111   PMID:16360650   PMID:16364899  
PMID:16602821   PMID:16615895   PMID:17145500   PMID:17223098   PMID:17329426   PMID:17362911   PMID:17443771   PMID:17626059   PMID:17942483   PMID:18199763   PMID:18262512   PMID:18287559  
PMID:18356247   PMID:18434520   PMID:18489001   PMID:18617019   PMID:18799693   PMID:18804103   PMID:18942144   PMID:19332558   PMID:19386662   PMID:19403658   PMID:19628041   PMID:19790074  
PMID:19812329   PMID:20006658   PMID:20010807   PMID:20550939   PMID:20713502   PMID:21059704   PMID:21267068   PMID:21273439   PMID:21658587   PMID:21873635   PMID:21924961   PMID:22076636  
PMID:22279234   PMID:22492355   PMID:22615927   PMID:22627288   PMID:22726444   PMID:22790009   PMID:23063659   PMID:23534961   PMID:23603393   PMID:23821580   PMID:23902858   PMID:23991118  
PMID:24006456   PMID:24194600   PMID:24439904   PMID:24952961   PMID:25143608   PMID:25843547   PMID:25874621   PMID:25953347   PMID:26302206   PMID:26305926   PMID:26319580   PMID:26385750  
PMID:26509897   PMID:26620267   PMID:26633812   PMID:26856818   PMID:27626380   PMID:27667971   PMID:27751443   PMID:28373097   PMID:28558017   PMID:28729362   PMID:28731029   PMID:28929539  
PMID:29154130   PMID:29358640   PMID:29415226   PMID:30237243   PMID:30628891   PMID:30635860   PMID:30735130   PMID:30796970   PMID:30819894   PMID:31315048  


Genomics

Comparative Map Data
Sema3f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,558,698 - 107,587,674 (-)NCBIGRCm39mm39
GRCm389107,681,499 - 107,710,475 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,681,500 - 107,710,475 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,583,833 - 107,612,806 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,539,603 - 107,568,576 (-)NCBImm8
Celera9107,287,142 - 107,316,223 (-)NCBICelera
Cytogenetic Map9F1NCBI
SEMA3F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,155,045 - 50,189,075 (+)EnsemblGRCh38hg38GRCh38
GRCh38350,155,058 - 50,189,075 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,192,562 - 50,226,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,167,852 - 50,201,512 (+)NCBINCBI36hg18NCBI36
Build 34350,167,851 - 50,201,511NCBI
Celera350,165,676 - 50,199,339 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,248,557 - 50,282,194 (+)NCBIHuRef
CHM1_1350,144,748 - 50,178,783 (+)NCBICHM1_1
Sema3f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,439,996 - 116,469,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,437,696 - 116,469,915 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,795,106 - 115,824,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,932,112 - 112,962,333 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,951,566 - 112,982,883 (-)NCBI
Celera8107,663,870 - 107,693,466 (-)NCBICelera
Cytogenetic Map8q32NCBI
Sema3f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,988,486 - 2,017,170 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,992,417 - 2,015,879 (+)NCBIChiLan1.0ChiLan1.0
SEMA3F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,318,089 - 51,351,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,318,089 - 51,351,958 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,083,733 - 50,117,518 (+)NCBIMhudiblu_PPA_v0panPan3
SEMA3F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,136,523 - 39,161,325 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,135,580 - 39,165,381 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Sema3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,704,523 - 1,733,465 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA3F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,641,423 - 32,671,223 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,641,376 - 32,671,231 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,820,323 - 35,849,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA3F
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2211,545,455 - 11,575,006 (+)Ensembl
ChlSab1.12211,540,958 - 11,574,888 (+)NCBI
Sema3f
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,035,909 - 4,064,796 (+)NCBI

Position Markers
D3S4519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,684,550 - 107,684,747UniSTSGRCm38
MGSCv379107,586,881 - 107,587,078UniSTSGRCm37
Celera9107,290,188 - 107,290,385UniSTS
Cytogenetic Map9F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:452
Count of miRNA genes:289
Interacting mature miRNAs:336
Transcripts:ENSMUST00000080560
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_871078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF036162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF080090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF080091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF736303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX566341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000080560   ⟹   ENSMUSP00000079400
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,681,500 - 107,710,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192157
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,684,130 - 107,684,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,687,756 - 107,689,917 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192727   ⟹   ENSMUSP00000141865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,682,418 - 107,705,556 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192783   ⟹   ENSMUSP00000141668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,687,742 - 107,692,642 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193108   ⟹   ENSMUSP00000141878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,688,326 - 107,709,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,687,275 - 107,692,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194039   ⟹   ENSMUSP00000142221
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,683,122 - 107,710,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194424   ⟹   ENSMUSP00000142178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,683,991 - 107,687,317 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,684,007 - 107,684,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195023   ⟹   ENSMUSP00000141350
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,689,686 - 107,692,703 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,683,122 - 107,684,761 (-)Ensembl
RefSeq Acc Id: NM_001311151   ⟹   NP_001298080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,701 - 107,582,790 (-)NCBI
GRCm389107,681,502 - 107,705,591 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379496   ⟹   NP_001366425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,698 - 107,587,161 (-)NCBI
GRCm389107,681,499 - 107,709,962 (-)NCBI
RefSeq Acc Id: NM_011349   ⟹   NP_035479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,701 - 107,587,674 (-)NCBI
GRCm389107,681,502 - 107,710,475 (-)NCBI
MGSCv379107,583,833 - 107,612,806 (-)RGD
Celera9107,287,142 - 107,316,223 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313226   ⟹   XP_017168715
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,560,054 - 107,587,221 (-)NCBI
GRCm389107,682,855 - 107,710,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313227   ⟹   XP_017168716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,560,054 - 107,587,221 (-)NCBI
GRCm389107,682,855 - 107,710,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313228   ⟹   XP_017168717
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,698 - 107,587,219 (-)NCBI
GRCm389107,681,499 - 107,710,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313229   ⟹   XP_017168718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,560,053 - 107,569,841 (-)NCBI
GRCm389107,682,853 - 107,692,642 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313230   ⟹   XP_017168719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,560,052 - 107,567,953 (-)NCBI
GRCm389107,682,853 - 107,689,726 (-)NCBI
Sequence:
RefSeq Acc Id: XR_379758
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,698 - 107,587,219 (-)NCBI
GRCm389107,682,736 - 107,710,024 (-)NCBI
Sequence:
RefSeq Acc Id: XR_379759
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,561,749 - 107,587,219 (-)NCBI
GRCm389107,684,550 - 107,710,024 (-)NCBI
Sequence:
RefSeq Acc Id: XR_871078
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,558,698 - 107,587,219 (-)NCBI
GRCm389107,681,499 - 107,710,024 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035479   ⟸   NM_011349
- Peptide Label: isoform 2 precursor
- UniProtKB: O88632 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168717   ⟸   XM_017313228
- Peptide Label: isoform X3
- UniProtKB: O88632 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001298080   ⟸   NM_001311151
- Peptide Label: isoform 1 precursor
- UniProtKB: O88632 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168719   ⟸   XM_017313230
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017168718   ⟸   XM_017313229
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017168716   ⟸   XM_017313227
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017168715   ⟸   XM_017313226
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001366425   ⟸   NM_001379496
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: ENSMUSP00000142178   ⟸   ENSMUST00000194424
RefSeq Acc Id: ENSMUSP00000142221   ⟸   ENSMUST00000194039
RefSeq Acc Id: ENSMUSP00000141878   ⟸   ENSMUST00000193108
RefSeq Acc Id: ENSMUSP00000141668   ⟸   ENSMUST00000192783
RefSeq Acc Id: ENSMUSP00000141865   ⟸   ENSMUST00000192727
RefSeq Acc Id: ENSMUSP00000079400   ⟸   ENSMUST00000080560
RefSeq Acc Id: ENSMUSP00000141350   ⟸   ENSMUST00000195023
Protein Domains
Ig-like C2-type   Sema

Promoters
RGD ID:6848470
Promoter ID:MM_ACW:51963
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:SEMA3F.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,586,446 - 107,586,946 (-)MPROMDB
RGD ID:6848471
Promoter ID:MM_ACW:51966
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:SEMA3F.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,589,796 - 107,590,296 (-)MPROMDB
RGD ID:6848468
Promoter ID:MM_ACW:51969
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:SEMA3F.ESEP07,   SEMA3F.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,594,541 - 107,595,041 (-)MPROMDB
RGD ID:6845133
Promoter ID:MM_KWN:58740
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000038162,   NM_011349,   UC009RMT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,611,966 - 107,612,466 (-)MPROMDB
RGD ID:8670824
Promoter ID:EPDNEW_M13442
Type:initiation region
Name:Sema3f_1
Description:Mus musculus sema domain, immunoglobulin domain , short basicdomain, secreted, 3F , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,709,936 - 107,709,996EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1096347 AgrOrtholog
Ensembl Genes ENSMUSG00000034684 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000079400 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141350 UniProtKB/TrEMBL
  ENSMUSP00000141668 UniProtKB/TrEMBL
  ENSMUSP00000141865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141878 UniProtKB/TrEMBL
  ENSMUSP00000142178 UniProtKB/TrEMBL
  ENSMUSP00000142221 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080560 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000192727 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000192783 UniProtKB/TrEMBL
  ENSMUST00000193108 UniProtKB/TrEMBL
  ENSMUST00000194039 UniProtKB/TrEMBL
  ENSMUST00000194424 UniProtKB/TrEMBL
  ENSMUST00000195023 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  PSI UniProtKB/Swiss-Prot
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
KEGG Report mmu:20350 UniProtKB/Swiss-Prot
MGD MGI:1096347 ENTREZGENE
NCBI Gene 20350 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema3f PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
  SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot
  PSI UniProtKB/Swiss-Prot
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48726 UniProtKB/Swiss-Prot
UniGene Mm.12903 ENTREZGENE
UniProt A0A0A6YW11_MOUSE UniProtKB/TrEMBL
  A0A0A6YWS0_MOUSE UniProtKB/TrEMBL
  A0A0A6YX80_MOUSE UniProtKB/TrEMBL
  A0A0A6YXX2_MOUSE UniProtKB/TrEMBL
  A0A0A6YY06_MOUSE UniProtKB/TrEMBL
  O54948_MOUSE UniProtKB/TrEMBL
  O88632 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QNC5 UniProtKB/Swiss-Prot
  O88633 UniProtKB/Swiss-Prot