Advanced Search (OLGA)

Gene: SEMA3F (semaphorin 3F) Chlorocebus sabaeus

Analyze

Symbol:

SEMA3F

Name:

semaphorin 3F

RGD ID:

18641229

Description:

ENCODES a protein that exhibits chemorepellent activity (inferred); semaphorin receptor binding (inferred); signaling receptor binding (inferred); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); negative chemotaxis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

semaphorin-3F

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEMA3F (semaphorin 3F)	NCBI	Ortholog
Mus musculus (house mouse):	Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,540,958 - 11,574,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,545,455 - 11,575,006 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	155,411,362 - 155,445,307 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 1 (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Endometrial Neoplasms (ISO)

Hearing Loss (ISO)

hypogonadotropic hypogonadism (ISO)

Klinefelter syndrome (ISO)

primary ciliary dyskinesia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon extension involved in axon guidance (IEA,ISO)

axon guidance (IEA,ISO)

branchiomotor neuron axon guidance (IEA)

facial nerve structural organization (IEA)

negative chemotaxis (IEA,ISO)

negative regulation of axon extension involved in axon guidance (IEA,ISO)

nerve development (IEA)

neural crest cell migration (IEA)

neural crest cell migration involved in autonomic nervous system development (IEA)

positive regulation of cell migration (IEA)

regulation of postsynapse organization (IEA)

semaphorin-plexin signaling pathway (IEA)

signal transduction (IEA)

sympathetic ganglion development (IEA)

sympathetic neuron projection extension (IEA)

sympathetic neuron projection guidance (IEA)

system development (IEA)

trigeminal nerve structural organization (IEA)

trunk neural crest cell migration (IEA,ISO)

ventral trunk neural crest cell migration (IEA)

Cellular Component

extracellular space (IEA)

glutamatergic synapse (IEA,ISO)

plasma membrane (IEA)

Molecular Function

chemorepellent activity (IEA)

semaphorin receptor binding (IEA)

signaling receptor binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SEMA3F
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,540,958 - 11,574,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,545,455 - 11,575,006 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	155,411,362 - 155,445,307 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SEMA3F
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	50,155,058 - 50,189,075 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	50,155,045 - 50,189,075 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	50,192,491 - 50,226,508 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	50,167,852 - 50,201,512 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	50,167,851 - 50,201,511	NCBI
Celera	3	50,165,676 - 50,199,339 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,248,557 - 50,282,194 (+)	NCBI		HuRef
CHM1_1	3	50,145,118 - 50,178,783 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	50,184,392 - 50,218,408 (+)	NCBI		T2T-CHM13v2.0

Sema3f
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,558,698 - 107,587,674 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,558,699 - 107,587,674 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	107,681,499 - 107,710,475 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,681,500 - 107,710,475 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	107,583,833 - 107,612,806 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,539,603 - 107,568,576 (-)	NCBI		MGSCv36	mm8
Celera	9	107,287,142 - 107,316,223 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	58.91	NCBI

Sema3f
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,236,269 - 117,265,206 (-)	NCBI		GRCr8
mRatBN7.2	8	108,357,629 - 108,386,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,357,629 - 108,387,083 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	113,984,571 - 114,014,000 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,183,731 - 112,213,160 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,026,513 - 110,055,942 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,439,996 - 116,469,915 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,437,696 - 116,469,915 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	115,795,106 - 115,824,684 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	112,932,112 - 112,962,333 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	112,951,566 - 112,982,883 (-)	NCBI
Celera	8	107,663,870 - 107,693,466 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Sema3f
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,988,486 - 2,017,170 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,992,417 - 2,015,879 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEMA3F
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,138,188 - 50,171,978 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,143,073 - 50,176,753 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,083,733 - 50,117,518 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,318,089 - 51,351,958 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,318,089 - 51,351,958 (+)	Ensembl	panpan1.1		panPan2

SEMA3F
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,135,580 - 39,165,381 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,136,523 - 39,161,325 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,056,637 - 39,085,160 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,491,876 - 39,521,715 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,491,886 - 39,522,414 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,859,427 - 38,889,253 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,263,538 - 39,293,588 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,543,271 - 39,573,112 (-)	NCBI		UU_Cfam_GSD_1.0

Sema3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,944,032 - 64,972,968 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,704,476 - 1,733,941 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,704,523 - 1,733,465 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA3F
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,641,424 - 32,671,223 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	32,641,376 - 32,671,231 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,820,323 - 35,849,831 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Sema3f
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	4,035,874 - 4,065,667 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	4,035,909 - 4,064,796 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SEMA3F
426 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	19	35	35	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007984288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000012478 ⟹ ENSCSAP00000010511

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	22	11,545,455 - 11,575,006 (+)	Ensembl

RefSeq Acc Id:

XM_007984288 ⟹ XP_007982479

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	11,540,958 - 11,574,888 (+)	NCBI
Vero_WHO_p1.0	NW_023666041	155,411,362 - 155,445,307 (-)	NCBI

Sequence:

show sequence

GAGACCAGAGCGAGCGAACGCACCGCGGCCGTCCGGAGAGCCCCGAGCGCAGCGCAGGACCAGG
GCACGCCGCGAGGAACCGTGCAGCCCGGCGCGGCCGCCCGGCCGGGGTCCTGCAGCCAGGAGAG
CGCAGAGCTTCGAAGCCGAGTGCGCGCCACCGCCCGCGCCCCGCGCTGGGGAATGCGCCCTCGG
CGCGCCGGCCAGGGGGCGCCCGCAGCCCGCCCCGTGGGAGGCGGCCCCGAGCGCCCCTGAGTCT
TCCCATGGCCCGGGCTGGGGCCCGGGCCCTCGGCTGCTGACGCGCCCGAAGCCCGCGGAACCGG
TTAAGCCGCGGCCGCGGCGCCGATCCCGGCTGAGGCGCAGCGGCGAGAGGTCGCTGGCAGGGCT
ATGGCCCCGGGGGGCCGCTAGCGCGGACCGGCCCAACGGGAACCGCTCCGTGCCGCCGCCGCCG
CCCGGGCGCCCAGGCCCCGCCGCTGCGGAAGAGGTGTCTAGAGAGTGGAGCCTGCCTCCTGGGC
CCTAGGCCCCTCCCACAATGCTTGTCGCAGGTCTTCTTCTCTGGGCTTGCCTACTGACTGGGGC
CTGGCCAGCCTTCCCCACCCAGGACCACTTCCCAGCCACACCCCGGGTCCGGCTCTCATTCAAA
GAGTTGAAGGCCACAGGTACTGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAA
TCTTGCTCAAGGATGAGGACCACGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCT
GGACCTGCACGACATCAACCGCGAGCCCCTCATTATACACTGGGCAGCCTCCCCACAGCGCATT
GAGGAATGCGTGCTCTCAGGCAAGGATGGCAACGGCGAGTGTGGGAACTTCGTCAGGCTCATCC
AGCCCTGGAACCGAACACATCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTA
TGTGAACCGTGGACGCCGTGCCCAGGCCACACCACGGACCCAGACGCAGGCGGTCAGAGGCCGC
GGCAGCAGAGCCACAGATGGTGCCCTCCGCCCGACGCCCACAGCCCCACGCCAGGATTACATCT
TCTACTTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTATGATCCCAAGCTGGA
CACAGCGTCGGCCCTCATCAATGAAGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACT
GACGCAGCCATCTTCCGCACACTTGGAAAGCAGACGGCCATGCGCACGGATCAGTACAACTCCC
GGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGCTCATTCCTGACAGCGCGGAGCGCAATGA
TGATAAGCTCTACTTCTTCTTCCGTGAGCGGTCGGCAGAGGCACCACAGAGCCCCGCTGTGTAT
GCCCGCATTGGGCGCATTTGCCTGAATGATGACGGTGGTCACTGTTGCCTGGTCAACAAGTGGA
GCACATTCCTGAAGGCGCGGCTCGTCTGCTCCGTCCCGGGCGAGGATGGCATTGAGACTCACTT
TGATGAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCT
GTCTTTACCTCCTCTGGCTCCGTGTTCCGAGGCTCTGCTGTGTGTGTCTACTCCATGGCTGATA
TTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTT
CTCAGGGAAGATGCCCTACCCACGGCCGGGCACGTGCCCTGGTGGAACCTTCACACCATCTATG
AAGTCCACCAAGGACTATCCTGATGAGGTGATCAACTTCATGCGCAGCCACCCGCTCATGTACC
AGGCCGTGTACCCTCTGCAGCGGCGGCCCCTGGTGGTCCGCACAGGTGCTCCCTACCGCCTCAC
CACTGTTGCTGTGGACCAGGTGGATGCAGCTGACGGGCGCTATGAGGTGCTTTTCCTGGGCACA
GACCGCGGGACAGTGCAGAAGGTCATTGTGCTGCCCAAGGATGACCAGGAGATGGAAGAGCTCA
TGCTAGAGGAGGTGGAGGTCTTCAAGGATCCAGCACCTGTCAAGACCATGACCATCTCTTCCAA
GAGGCAACAACTCTACGTGGCATCAGCCGTGGGTGTCACGCACCTGAGCCTGCATCGCTGCCAG
GCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTGCGCCTGGGATGGCC
AGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGAGCCGCCGGCAGGACGTCCGGCATGG
AAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATGCCGTGGAGTCTGTG
CAGTATGGTGTGGCCGGCAGCGCAGCCTTCCTGGAGTGCCAGCCCCGCTCGCCCCAAGCCACTG
TTAAGTGGCTGTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTT
CCTGCGCACAGAGCAGGGCTTGTTGCTCCGTGCCCTGCAGCTCAGCGATCGTGGCCTCTACTCC
TGCACAGCCACTGAGAACAACTTTAAACATGTCGTCACACGAGTGCAGCTGCATGTACTGGGCC
AGGAAGCCGTCCATGCTGCCCTCTTCCCACCACTGGCCGTGAGCGCCCCGCCACCCCCAGGCGC
AGGTCCCCCAACGCCTCCTTATCAGGAGCTGGCCCAGCTACTGGCCCAGCCAGAAGTGGGCCTC
ATCCACCAGTACTGCCAGGGTTACTGGCGCCATGTGCCCCCCAGCCCCAGGGAGGCTCCAGGAG
CACCTCGGTCTCCTGAGCCCCGGGACCAGAAAAAGCCCCGGAACCGTCGGCACCACCCTCCGGA
CACATGAGGCCAGCTGCCTGAGCCCTGCCATGGGCCAGCCTAGCCGTTGTCCCTTTTAATATAA
AAGATATATATATATATATAAATATATATATATAAAATATCTATATTCTATACACACCCTGCCC
CTGCAAAGACAGTATTTATTGGTGGGTTGAATATAGCCTGCCTCAGTGGCAGCCTCCTCCAAAA
CTTAGACCCATGTTGGTCAGAGATGGCAGAAAACAGAGCCAGCCTAAACAGGCCCAGCCAGTTG
GTGGGGCCAGGCCAGGACCACACAGTCCCCAGACTCAGCTGGAAGTCTACCTGCTTGACAGCCT
CCACCAAGATCTACAGGACAAAGGGAGGGAACAAGCCCTGCTCGAATGGGGCACGGACTGTCCA
CCTTTTCTGATGTGTGCTGTCACTGTCAACCTGTGCTGTGGCATAGATATGGATGCGAGGACCA
CTTTGGAGACTGGGGTGGCCTTAAGTGCACTCAGAGAAGGGAAGAAGGGGCCATCACAGGATGC
CAGCCCCTGCCTGGGTTGGGGGCACTCAGCCACGGCCAGCCCCTTCCTGGGTATTTATTCTCTA
TTTATTGGGGATAGGAGAAGAGGCATCCTGCCTGGGTGGGACAGCCCCTTCAGCCCCTTCTCCC
CTCCCTGCCTGGCCAGGGCAGGGCCACCCCACTCTACCTCCTTAGCTTTCCCTGTGCCAGTTTG
ACTCGGAGGCTGGGAGCATAGCAGAGGGGCCAGGCCCAGGCAGGGCTGACGGGAGGCCCCAGCT
CTGAGGGGAGGGGGTCCGTGGTAGAGGCCTGGGGCCAGTAGAGGCTCCCCAGGGCTTATGTCCA
CCACGTCAAGCAATGGGTGTGGATGTAATTAGCTCTGGGGGCGGTTGGGTAGATGGGTGGGGGC
TCCTGGCGGCCTTCTGCTGCCCAGGCCACAGCCGCCTTTGGGTTCCATCTTGCTAATAAACACT
GGCTCTGGGACTAGA

hide sequence

RefSeq Acc Id:

XM_007984289 ⟹ XP_007982480

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	11,540,959 - 11,574,888 (+)	NCBI
Vero_WHO_p1.0	NW_023666041	155,411,362 - 155,445,306 (-)	NCBI

Sequence:

show sequence

AGACCAGAGCGAGCGAACGCACCGCGGCCGTCCGGAGAGCCCCGAGCGCAGCGCAGGACCAGGG
CACGCCGCGAGGAACCGTGCAGCCCGGCGCGGCCGCCCGGCCGGGGTCCTGCAGCCAGGAGAGC
GCAGAGCTTCGAAGCCGAGTGCGCGCCACCGCCCGCGCCCCGCGCTGGGGAATGCGCCCTCGGC
GCGCCGGCCAGGGGGCGCCCGCAGCCCGCCCCGTGGGAGGCGGCCCCGAGCGCCCCTGAGTCTT
CCCATGGCCCGGGCTGGGGCCCGGGCCCTCGGCTGCTGACGCGCCCGAAGCCCGCGGAACCGGT
TAAGCCGCGGCCGCGGCGCCGATCCCGGCTGAGGCGCAGCGGCGAGAGGTCGCTGGCAGGGCTA
TGGCCCCGGGGGGCCGCTAGCGCGGACCGGCCCAACGGGAACCGCTCCGTGCCGCCGCCGCCGC
CCGGGCGCCCAGGCCCCGCCGCTGCGGAAGAGGTGTCTAGAGAGTGGAGCCTGCCTCCTGGGCC
CTAGGCCCCTCCCACAATGCTTGTCGCAGGTCTTCTTCTCTGGGCTTGCCTACTGACTGGGGCC
TGGCCAGCCTTCCCCACCCAGGACCACTTCCCAGCCACACCCCGGGTCCGGCTCTCATTCAAAG
AGTTGAAGGCCACAGGTACTGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAAT
CTTGCTCAAGGATGAGGACCACGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTG
GACCTGCACGACATCAACCGCGAGCCCCTCATTATACACTGGGCAGCCTCCCCACAGCGCATTG
AGGAATGCGTGCTCTCAGGCAAGGATGGCAACGGCGAGTGTGGGAACTTCGTCAGGCTCATCCA
GCCCTGGAACCGAACACATCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTAT
GTGAACCGTGGACGCCGTGCCCAGGATTACATCTTCTACTTGGAGCCTGAGCGACTCGAGTCAG
GGAAGGGCAAGTGTCCGTATGATCCCAAGCTGGACACAGCGTCGGCCCTCATCAATGAAGAGCT
CTATGCTGGTGTGTACATCGATTTTATGGGCACTGACGCAGCCATCTTCCGCACACTTGGAAAG
CAGACGGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATG
CTGAGCTCATTCCTGACAGCGCGGAGCGCAATGATGATAAGCTCTACTTCTTCTTCCGTGAGCG
GTCGGCAGAGGCACCACAGAGCCCCGCTGTGTATGCCCGCATTGGGCGCATTTGCCTGAATGAT
GACGGTGGTCACTGTTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCT
CCGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGATGAGCTCCAGGACGTGTTTGTCCAGCA
GACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTCTGGCTCCGTGTTCCGA
GGCTCTGCTGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCC
ACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGG
CACGTGCCCTGGTGGAACCTTCACACCATCTATGAAGTCCACCAAGGACTATCCTGATGAGGTG
ATCAACTTCATGCGCAGCCACCCGCTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGGCCCC
TGGTGGTCCGCACAGGTGCTCCCTACCGCCTCACCACTGTTGCTGTGGACCAGGTGGATGCAGC
TGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATTGTG
CTGCCCAAGGATGACCAGGAGATGGAAGAGCTCATGCTAGAGGAGGTGGAGGTCTTCAAGGATC
CAGCACCTGTCAAGACCATGACCATCTCTTCCAAGAGGCAACAACTCTACGTGGCATCAGCCGT
GGGTGTCACGCACCTGAGCCTGCATCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGC
CTTGCCCGGGACCCTTACTGCGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCA
AGAGGCGGAGCCGCCGGCAGGACGTCCGGCATGGAAACCCCATCAGGCAGTGCCGTGGGTTCAA
CTCCAATGCCAACAAGAATGCCGTGGAGTCTGTGCAGTATGGTGTGGCCGGCAGCGCAGCCTTC
CTGGAGTGCCAGCCCCGCTCGCCCCAAGCCACTGTTAAGTGGCTGTTCCAGCGAGATCCTGGTG
ACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACAGAGCAGGGCTTGTTGCTCCG
TGCCCTGCAGCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGAACAACTTTAAACAT
GTCGTCACACGAGTGCAGCTGCATGTACTGGGCCAGGAAGCCGTCCATGCTGCCCTCTTCCCAC
CACTGGCCGTGAGCGCCCCGCCACCCCCAGGCGCAGGTCCCCCAACGCCTCCTTATCAGGAGCT
GGCCCAGCTACTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGTTACTGGCGC
CATGTGCCCCCCAGCCCCAGGGAGGCTCCAGGAGCACCTCGGTCTCCTGAGCCCCGGGACCAGA
AAAAGCCCCGGAACCGTCGGCACCACCCTCCGGACACATGAGGCCAGCTGCCTGAGCCCTGCCA
TGGGCCAGCCTAGCCGTTGTCCCTTTTAATATAAAAGATATATATATATATATAAATATATATA
TATAAAATATCTATATTCTATACACACCCTGCCCCTGCAAAGACAGTATTTATTGGTGGGTTGA
ATATAGCCTGCCTCAGTGGCAGCCTCCTCCAAAACTTAGACCCATGTTGGTCAGAGATGGCAGA
AAACAGAGCCAGCCTAAACAGGCCCAGCCAGTTGGTGGGGCCAGGCCAGGACCACACAGTCCCC
AGACTCAGCTGGAAGTCTACCTGCTTGACAGCCTCCACCAAGATCTACAGGACAAAGGGAGGGA
ACAAGCCCTGCTCGAATGGGGCACGGACTGTCCACCTTTTCTGATGTGTGCTGTCACTGTCAAC
CTGTGCTGTGGCATAGATATGGATGCGAGGACCACTTTGGAGACTGGGGTGGCCTTAAGTGCAC
TCAGAGAAGGGAAGAAGGGGCCATCACAGGATGCCAGCCCCTGCCTGGGTTGGGGGCACTCAGC
CACGGCCAGCCCCTTCCTGGGTATTTATTCTCTATTTATTGGGGATAGGAGAAGAGGCATCCTG
CCTGGGTGGGACAGCCCCTTCAGCCCCTTCTCCCCTCCCTGCCTGGCCAGGGCAGGGCCACCCC
ACTCTACCTCCTTAGCTTTCCCTGTGCCAGTTTGACTCGGAGGCTGGGAGCATAGCAGAGGGGC
CAGGCCCAGGCAGGGCTGACGGGAGGCCCCAGCTCTGAGGGGAGGGGGTCCGTGGTAGAGGCCT
GGGGCCAGTAGAGGCTCCCCAGGGCTTATGTCCACCACGTCAAGCAATGGGTGTGGATGTAATT
AGCTCTGGGGGCGGTTGGGTAGATGGGTGGGGGCTCCTGGCGGCCTTCTGCTGCCCAGGCCACA
GCCGCCTTTGGGTTCCATCTTGCTAATAAACACTGGCTCTGGGACTAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007982479	(Get FASTA)	NCBI Sequence Viewer
	XP_007982480	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010511
	ENSCSAP00000010511.1

RefSeq Acc Id:	XP_007982479 ⟸ XM_007984288
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007982480 ⟸ XM_007984289
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RPH2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000010511 ⟸ ENSCSAT00000012478

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014384	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012478.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Semap_dom	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	SEMA3F	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-3F	UniProtKB/TrEMBL
Pfam	Sema	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	SEMA	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	SSF101912	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0D9RPH2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD