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ONTOLOGY REPORT - ANNOTATIONS

Term:dorsal/ventral pattern formation
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Accession:GO:0009953 term browser browse the term
Definition:The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms:exact_synonym: dorsoventral pattern formation
 narrow_synonym: dorsal/ventral pattern specification


show annotations for term's descendants           Sort by:
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Acvr1 activin A receptor type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO MGI:3578151 (PMID:15755804) RGD PMID:15755804 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1856035 (PMID:18316368) RGD PMID:18316368 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Bmp1 bone morphogenetic protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:107191 (PMID:15673568)		 GO_Central
RGD		 PMID:15673568 GO_REF:0000033 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1338938 (PMID:15673568)		 GO_Central
RGD		 PMID:15673568 GO_REF:0000033 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrd chordin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2157350 (PMID:12810603)		 GO_Central
RGD		 PMID:12810603 GO_REF:0000033 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO MGI:2148567|MGI:2176173 (PMID:15708565) RGD PMID:15708565 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2448055|MGI:98297 (PMID:15269168), (PMID:15755804) RGD PMID:15269168 PMID:15755804 NCBI chr13:94,720,928...94,866,695
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:105373|MGI:3578144|MGI:95729|MGI:98297 (PMID:15755804), (PMID:16061793), (PMID:16229832), (PMID:21552265)		 Ensembl
RGD		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (PMID:15110048) RGD PMID:15110048 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (PMID:8684466), (PMID:9362463) RGD PMID:8684466 PMID:9362463 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:245,189,732...245,191,973
Ensembl chr 1:245,189,736...245,192,007 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO MGI:3042750 (PMID:15105374) RGD PMID:15105374 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1857771|MGI:1932522 (PMID:14566948), (PMID:15893304) RGD PMID:14566948 PMID:15893304 NCBI chr 6:66,674,797...66,677,611
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070 (PMID:17504940) RGD PMID:17504940 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO MGI:95728 (PMID:16342201) RGD PMID:16342201 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727 (PMID:16342201) RGD PMID:16342201 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856275|MGI:1856276 (PMID:12435629), (PMID:14723851), (PMID:16571630) RGD PMID:12435629 PMID:14723851 PMID:16571630 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hhip Hedgehog-interacting protein acts_upstream_of_or_within ISO MGI:105373 (PMID:15576403) RGD PMID:15576403 NCBI chr19:27,863,684...27,952,528
Ensembl chr19:27,863,213...27,952,528 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:11493536) RGD PMID:11493536 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857626|MGI:96183 (PMID:10230789)		 Ensembl
RGD		 PMID:10230789 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96174 (PMID:10230789) RGD PMID:10230789 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:11493536) RGD PMID:11493536 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529|MGI:98297 (PMID:15755804), (PMID:21552265) RGD PMID:15755804 PMID:21552265 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108075|MGI:2682066 (PMID:14603322), (PMID:15755804), (PMID:16061793), (PMID:21552265)		 Ensembl
RGD		 PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) RGD PMID:15930098 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:3027342 (PMID:15755804), (PMID:15930098) RGD PMID:15755804 PMID:15930098 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:3580660 (PMID:15755804) RGD PMID:15755804 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1347476 (PMID:10498685)		 UniProt
RGD		 PMID:10498685 GO_REF:0000024 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1890208 (PMID:11165475), (PMID:14566948)		 Ensembl
RGD		 PMID:11165475 PMID:14566948 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO MGI:2385819 (PMID:18037398) RGD PMID:18037398 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta involved_in ISO (MGI:3687803|PMID:10767331) RGD PMID:10767331 MGI:3687803 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO MGI:3621893|MGI:3707955 (PMID:16207730), (PMID:17119023) RGD PMID:16207730 PMID:17119023 NCBI chr 3:77,429,600...77,483,593
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:7666191)		 Ensembl
RGD		 PMID:7666191 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO MGI:1857063 (PMID:8155581) RGD PMID:8155581 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2661067 (PMID:12652306) RGD PMID:12652306 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3522498 (PMID:16423343) RGD PMID:16423343 NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155|MGI:2156741|MGI:3521718 (PMID:15548580), (PMID:15878992) RGD PMID:15548580 PMID:15878992 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO MGI:1856842|MGI:3521736 (PMID:12183375), (PMID:15459176) RGD PMID:12183375 PMID:15459176 NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434 		JBrowse link
G Ptch1 patched 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1341847 (PMID:15576403)		 UniProt
RGD		 PMID:15576403 GO_REF:0000024 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1916147|MGI:1932386 (PMID:15269168), (PMID:21552265)		 UniProt
RGD		 PMID:15269168 PMID:21552265 GO_REF:0000024 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO MGI:2137553|MGI:2176173|MGI:2176256 (PMID:15755804), (PMID:16571630) RGD PMID:15755804 PMID:16571630 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO MGI:2684137 (PMID:14597661) RGD PMID:14597661 NCBI chr 6:139,816,258...139,818,865
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO MGI:3580099 (PMID:15901664) RGD PMID:15901664 NCBI chr 8:23,200,104...23,258,218
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO MGI:3698004 (PMID:17082251) RGD PMID:17082251 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tll1 tolloid-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:25,509,146...25,710,330
Ensembl chr16:25,509,146...25,709,543 		JBrowse link
G Tll2 tolloid-like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:239,912,648...240,028,168
Ensembl chr 1:239,915,508...240,028,120 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO MGI:1857704 (PMID:7885472), (PMID:9362463) RGD PMID:7885472 PMID:9362463 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO (MGI:5507937|PMID:23063586) RGD PMID:23063586 MGI:5507937 NCBI chr13:86,778,543...86,871,509
Ensembl chr13:86,778,500...86,871,615 		JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist involved_in ISO (MGI:1203284|PMID:9660951) RGD PMID:9660951 MGI:1203284 NCBI chr 5:151,318,752...151,329,948
Ensembl chr 5:151,318,754...151,338,719 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:94,940,311...94,967,920
Ensembl chr13:94,939,741...94,967,920 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10330403)		 Ensembl
RGD		 PMID:10330403 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2181295 (PMID:12923052) RGD PMID:12923052 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2148594|MGI:2158470 (PMID:12923052)		 Ensembl
RGD		 PMID:12923052 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:4441142 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856155|MGI:1934347 (PMID:10588713)		 Ensembl
RGD		 PMID:10588713 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9192640)		 Ensembl
RGD		 PMID:9192640 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2159246|MGI:2388160 (PMID:11830578), (PMID:11830579)		 Ensembl
RGD		 PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15218525)		 Ensembl
RGD		 PMID:15218525 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (PMID:18003640), (PMID:18590716) RGD PMID:18003640 PMID:18590716 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa1 forkhead box A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1347476 (PMID:23383217)		 Ensembl
RGD		 PMID:23383217 GO_REF:0000107 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472|MGI:95841 (PMID:18590716), (PMID:23383217), (PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (PMID:17504940), (PMID:17504941) RGD PMID:17504940 PMID:17504941 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:18590716), (PMID:19286674), (PMID:9247260) RGD PMID:9247260 PMID:18590716 PMID:19286674 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO MGI:1347476 (PMID:9226455) RGD PMID:9226455 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Kif3a kinesin family member 3a involved_in
acts_upstream_of_or_within		 ISO (MGI:4888042|PMID:21209331)
MGI:1341070|MGI:1861960|MGI:95728 (PMID:18590716), (PMID:19286674)		 RGD PMID:18590716 PMID:19286674 PMID:21209331 MGI:4888042 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) RGD PMID:18590716 NCBI chr 4:5,866,506...5,871,465
Ensembl chr 4:5,866,506...5,871,465 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) RGD PMID:18590716 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284 (PMID:10557208) RGD PMID:10557208 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208) RGD PMID:10557208 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO MGI:1857447 (PMID:9262482) RGD PMID:9262482 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (MGI:69552|PMID:7720556) RGD PMID:7720556 MGI:69552 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO MGI:6393918 (PMID:30177510) RGD PMID:30177510 NCBI chr 5:130,739,173...130,961,386
Ensembl chr 5:130,739,183...130,961,418 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:95655 (PMID:17442700), (PMID:17504941), (PMID:18590716)
(MGI:4888042|PMID:21209331)		 Ensembl
RGD		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176255 (PMID:18590716)		 Ensembl
RGD		 PMID:18590716 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO MGI:3716885 (PMID:16357211) RGD PMID:16357211 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (PMID:8299937) RGD PMID:8299937 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1857843|MGI:2150348 (PMID:16613831) RGD PMID:16613831 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:10625551) RGD PMID:10625551 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:11060228), (PMID:11124115), (PMID:18701439) RGD PMID:11060228 PMID:11124115 PMID:18701439 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494 (PMID:10393115), (PMID:11163262), (PMID:11830575)		 Ensembl
RGD		 PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856155|MGI:1856158 (PMID:11050125), (PMID:11124115), (PMID:18701439), (PMID:24528677)		 Ensembl
RGD		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (PMID:19732765) RGD PMID:19732765 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA		 (PMID:16434966)
(MGI:4821075|PMID:16434966)
GO_REF:0000107		 RGD
Ensembl		 PMID:16434966 GO_REF:0000107 MGI:4821075 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Sostdc1 sclerostin domain containing 1 involved_in ISO (PMID:15020244) RGD PMID:15020244 NCBI chr 6:53,051,336...53,055,510
Ensembl chr 6:53,051,354...53,055,579 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (MGI:5468365|PMID:23332756) RGD PMID:23332756 MGI:5468365 NCBI chr13:77,578,257...77,623,661
Ensembl chr13:77,577,739...77,619,613 		JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA		 (PMID:19506109)
GO_REF:0000107		 RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:18316368)		 Ensembl
RGD		 PMID:18316368 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:18316368) RGD PMID:18316368 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:2442827|MGI:95729 (PMID:17395647), (PMID:20159594) RGD PMID:17395647 PMID:20159594 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2442827|MGI:95728 (PMID:17395647), (PMID:20159594) RGD PMID:17395647 PMID:20159594 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:2443231 (PMID:22689656) RGD PMID:22689656 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:95728|MGI:95729 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:3664273 (PMID:19223390) RGD PMID:19223390 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:1932386|MGI:5315748 (PMID:22689656) RGD PMID:22689656 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO
IEA		 (PMID:11472837)
GO_REF:0000107		 RGD
Ensembl		 PMID:11472837 GO_REF:0000107 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:21761479) RGD PMID:21761479 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (PMID:11748151), (PMID:15215207), (PMID:16364285) RGD PMID:11748151 PMID:15215207 PMID:16364285 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728|MGI:99833 (PMID:15215207), (PMID:16364285) RGD PMID:15215207 PMID:16364285 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153 (PMID:21761479) RGD PMID:21761479 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4441401 (PMID:21761479)		 Ensembl
RGD		 PMID:21761479 GO_REF:0000107 NCBI chr 2:123,600,972...123,685,331
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (PMID:14603322), (PMID:15755804), (PMID:16364285) RGD PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO
IDA		 GO_REF:0000107
MGI:1857796 (PMID:11748151)
PMID:9230312		 Ensembl
RGD		 PMID:11748151 PMID:9230312 GO_REF:0000107, RGD:8553789 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO		 GO_REF:0000107
(MGI:4888042|PMID:21209331)		 Ensembl
RGD		 PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:3619046 (PMID:16459298) RGD PMID:16459298 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3587461|PMID:16020526)		 UniProt
RGD		 PMID:16020526 GO_REF:0000024 MGI:3587461 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA		 UniProtKB:Q8K3Q3 (PMID:17728344)
GO_REF:0000107		 RGD
Ensembl		 PMID:17728344 GO_REF:0000107 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) RGD PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (PMID:10217145) RGD PMID:10217145 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO MGI:2182329 (PMID:11239429) RGD PMID:11239429 NCBI chr 1:99,348,638...99,354,173
Ensembl chr 1:99,349,608...99,354,038 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO MGI:4420993 (PMID:22932389) RGD PMID:22932389 NCBI chr 1:223,244,340...223,264,254
Ensembl chr 1:223,248,747...223,262,530 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    multicellular organismal process 8865
      pattern specification process 499
        regionalization 454
          dorsal/ventral pattern formation 100
            determination of dorsal identity + 9
            determination of dorsal/ventral asymmetry + 10
            determination of ventral identity 1
            dorsal/ventral axis specification + 13
            dorsal/ventral neural tube patterning + 25
            dorsal/ventral pattern formation, imaginal disc + 0
            embryonic heart tube dorsal/ventral pattern formation 0
            forebrain dorsal/ventral pattern formation 7
            spinal cord dorsal/ventral patterning + 19
Path 2
Term Annotations click to browse term
  biological_process 20115
    developmental process 7008
      anatomical structure development 6530
        multicellular organism development 5268
          pattern specification process 499
            regionalization 454
              dorsal/ventral pattern formation 100
                determination of dorsal identity + 9
                determination of dorsal/ventral asymmetry + 10
                determination of ventral identity 1
                dorsal/ventral axis specification + 13
                dorsal/ventral neural tube patterning + 25
                dorsal/ventral pattern formation, imaginal disc + 0
                embryonic heart tube dorsal/ventral pattern formation 0
                forebrain dorsal/ventral pattern formation 7
                spinal cord dorsal/ventral patterning + 19
paths to the root