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ONTOLOGY REPORT - ANNOTATIONS


Term:spinal cord patterning
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Accession:GO:0021511 term browser browse the term
Definition:The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord.


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spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Reln reelin involved_in IEP
IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
MGI:1856398 (MGI:3625412|PMID:16580148)
Ensembl
UniProt
RGD
PMID:16580148, PMID:14648677 GO_REF:0000024 GO_REF:0000107 MGI:3625412, RGD:2317803 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO
IEA
(PMID:11472837)
GO_REF:0000107
RGD
Ensembl
PMID:11472837 GO_REF:0000107 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Rfx4 regulatory factor X4 involved_in ISO
IBA
MGI:3799278 (MGI:5430880|PMID:19887680)
PMID:21873635
RGD PMID:19887680, PMID:21873635, PMID:21873635 MGI:5430880, RGD:13792537, RGD:13792537 NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
GO_REF:0000107
MGI:2176255 (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:19286674 PMID:21209331 GO_REF:0000107 MGI:3841503 MGI:4888042 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 ISO MGI:2449672 (MGI:3701017|PMID:16790475) RGD PMID:16790475 MGI:3701017 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein ISO MGI:4346364 (MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:5052192 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (MGI:2154468|PMID:11748151), (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) RGD PMID:11748151 PMID:15215207 PMID:16364285 MGI:2154468 MGI:3051712 MGI:3612806 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728|MGI:99833 (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) RGD PMID:15215207 PMID:16364285 MGI:3051712 MGI:3612806 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:1859153 (MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:5052192 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Intu inturned planar cell polarity protein involved_in IEA
ISO
GO_REF:0000107
MGI:4441401 (MGI:5052192|PMID:21761479)
Ensembl
RGD
PMID:21761479 GO_REF:0000107 MGI:5052192 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285) RGD PMID:14603322 PMID:15755804 PMID:16364285 MGI:2679893 MGI:3577662 MGI:3612806 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IDA
IEA
ISO
PMID:9230312
GO_REF:0000107
MGI:1857796 (MGI:2154468|PMID:11748151)
Ensembl
RGD
PMID:11748151, PMID:9230312, PMID:9230312 GO_REF:0000107 MGI:2154468, RGD:8553789, RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3619046 (MGI:3616741|PMID:16459298) RGD PMID:16459298 MGI:3616741 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3587461|PMID:16020526)
UniProt
RGD
PMID:16020526 GO_REF:0000024 MGI:3587461 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO UniProtKB:Q8K3Q3 (PMID:17728344) RGD PMID:17728344 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) RGD PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100 (MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 ISO MGI:2182329 (MGI:2136554|PMID:11239429) RGD PMID:11239429 MGI:2136554 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 ISO MGI:4420993 (MGI:5435948|PMID:22932389) RGD PMID:22932389 MGI:5435948 NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Shh sonic hedgehog signaling molecule IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:3653406 (MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:4834949

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    multicellular organismal process 9072
      pattern specification process 496
        regionalization 390
          spinal cord patterning 23
            spinal cord anterior/posterior patterning + 1
            spinal cord dorsal/ventral patterning + 21
Path 2
Term Annotations click to browse term
  biological_process 20078
    developmental process 6848
      anatomical structure development 6308
        multicellular organism development 5783
          system development 5311
            nervous system development 2733
              central nervous system development 1272
                spinal cord development 141
                  spinal cord patterning 23
                    spinal cord anterior/posterior patterning + 1
                    spinal cord dorsal/ventral patterning + 21
paths to the root