ONTOLOGY REPORT - ANNOTATIONS |
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Term: | spinal cord patterning |
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Accession: | GO:0021511
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browse the term
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Definition: | The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord. |
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Reln |
reelin |
involved_in |
IEP IEA ISS ISO |
GO_REF:0000107 GO_REF:0000024 MGI:1856398 (MGI:3625412|PMID:16580148) |
Ensembl UniProt RGD |
PMID:16580148, PMID:14648677 |
GO_REF:0000024 GO_REF:0000107 MGI:3625412, RGD:2317803 |
NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
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Chrd |
chordin |
involved_in |
ISO IEA |
(PMID:11472837) GO_REF:0000107 |
RGD Ensembl |
PMID:11472837 |
GO_REF:0000107 |
NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
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Ift122 |
intraflagellar transport 122 |
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ISO |
(MGI:4888042|PMID:21209331) |
RGD |
PMID:21209331 |
MGI:4888042 |
NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
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Rfx4 |
regulatory factor X4 |
involved_in |
ISO IBA |
MGI:3799278 (MGI:5430880|PMID:19887680) PMID:21873635 |
RGD |
PMID:19887680, PMID:21873635, PMID:21873635 |
MGI:5430880, RGD:13792537, RGD:13792537 |
NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
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Tulp3 |
TUB like protein 3 |
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ISO |
MGI:2388066 (MGI:3841503|PMID:19286674) |
RGD |
PMID:19286674 |
MGI:3841503 |
NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
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Gli2 |
GLI family zinc finger 2 |
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ISO |
MGI:95729 (MGI:3051712|PMID:15215207) |
RGD |
PMID:15215207 |
MGI:3051712 |
NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
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Gli3 |
GLI family zinc finger 3 |
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ISO |
MGI:95728 (MGI:3051712|PMID:15215207) |
RGD |
PMID:15215207 |
MGI:3051712 |
NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
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Sufu |
SUFU negative regulator of hedgehog signaling |
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ISO |
MGI:4840420 (MGI:4355593|PMID:19684112) |
RGD |
PMID:19684112 |
MGI:4355593 |
NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
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Gli2 |
GLI family zinc finger 2 |
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ISO |
MGI:95729 (MGI:3051712|PMID:15215207) |
RGD |
PMID:15215207 |
MGI:3051712 |
NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
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Gli3 |
GLI family zinc finger 3 |
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ISO |
MGI:95728 (MGI:3051712|PMID:15215207) |
RGD |
PMID:15215207 |
MGI:3051712 |
NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
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Sufu |
SUFU negative regulator of hedgehog signaling |
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ISO |
MGI:4840420 (MGI:4355593|PMID:19684112) |
RGD |
PMID:19684112 |
MGI:4355593 |
NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
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Smo |
smoothened, frizzled class receptor |
involved_in |
IEA ISO |
GO_REF:0000107 MGI:2176255 (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331) |
Ensembl RGD |
PMID:19286674 PMID:21209331 |
GO_REF:0000107 MGI:3841503 MGI:4888042 |
NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
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Gdf11 |
growth differentiation factor 11 |
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ISO |
MGI:2449672 (MGI:3701017|PMID:16790475) |
RGD |
PMID:16790475 |
MGI:3701017 |
NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
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Fuz |
fuzzy planar cell polarity protein |
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ISO |
MGI:4346364 (MGI:5052192|PMID:21761479) |
RGD |
PMID:21761479 |
MGI:5052192 |
NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
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Gli2 |
GLI family zinc finger 2 |
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ISO |
MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (MGI:2154468|PMID:11748151), (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) |
RGD |
PMID:11748151 PMID:15215207 PMID:16364285 |
MGI:2154468 MGI:3051712 MGI:3612806 |
NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
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Gli3 |
GLI family zinc finger 3 |
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ISO |
MGI:95728|MGI:99833 (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) |
RGD |
PMID:15215207 PMID:16364285 |
MGI:3051712 MGI:3612806 |
NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
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Ift88 |
intraflagellar transport 88 |
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ISO |
MGI:1859153 (MGI:5052192|PMID:21761479) |
RGD |
PMID:21761479 |
MGI:5052192 |
NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
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Intu |
inturned planar cell polarity protein |
involved_in |
IEA ISO |
GO_REF:0000107 MGI:4441401 (MGI:5052192|PMID:21761479) |
Ensembl RGD |
PMID:21761479 |
GO_REF:0000107 MGI:5052192 |
NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
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Rab23 |
RAB23, member RAS oncogene family |
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ISO |
MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285) |
RGD |
PMID:14603322 PMID:15755804 PMID:16364285 |
MGI:2679893 MGI:3577662 MGI:3612806 |
NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
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Shh |
sonic hedgehog signaling molecule |
involved_in |
IDA IEA ISO |
PMID:9230312 GO_REF:0000107 MGI:1857796 (MGI:2154468|PMID:11748151) |
Ensembl RGD |
PMID:11748151, PMID:9230312, PMID:9230312 |
GO_REF:0000107 MGI:2154468, RGD:8553789, RGD:8553789 |
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
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Sufu |
SUFU negative regulator of hedgehog signaling |
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ISO |
MGI:3619046 (MGI:3616741|PMID:16459298) |
RGD |
PMID:16459298 |
MGI:3616741 |
NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
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Ascl1 |
achaete-scute family bHLH transcription factor 1 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:3587461|PMID:16020526) |
UniProt RGD |
PMID:16020526 |
GO_REF:0000024 MGI:3587461 |
NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
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Dll4 |
delta like canonical Notch ligand 4 |
involved_in |
ISO |
UniProtKB:Q8K3Q3 (PMID:17728344) |
RGD |
PMID:17728344 |
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NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
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Foxn4 |
forkhead box N4 |
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ISO |
(MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) |
RGD |
PMID:16020526 PMID:17728344 |
MGI:3587461 MGI:3765356 |
NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
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Nkx2-2 |
NK2 homeobox 2 |
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ISO |
MGI:1932100 (MGI:1334824|PMID:10217145) |
RGD |
PMID:10217145 |
MGI:1334824 |
NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
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Dbx1 |
developing brain homeobox 1 |
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ISO |
MGI:2182329 (MGI:2136554|PMID:11239429) |
RGD |
PMID:11239429 |
MGI:2136554 |
NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
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Dmrt3 |
doublesex and mab-3 related transcription factor 3 |
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ISO |
MGI:4420993 (MGI:5435948|PMID:22932389) |
RGD |
PMID:22932389 |
MGI:5435948 |
NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
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Lhx3 |
LIM homeobox 3 |
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ISO |
(MGI:4356383|PMID:19666821) |
RGD |
PMID:19666821 |
MGI:4356383 |
NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
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Shh |
sonic hedgehog signaling molecule |
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IDA |
PMID:9230312 |
MGI |
PMID:9230312 |
RGD:8553789 |
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
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Sox1 |
SRY-box transcription factor 1 |
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ISO |
MGI:3653406 (MGI:4834949|PMID:20844123) |
RGD |
PMID:20844123 |
MGI:4834949 |
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Term paths to the root
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