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ONTOLOGY REPORT - ANNOTATIONS


Term:proximal/distal pattern formation
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Accession:GO:0009954 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).
Synonyms:narrow_synonym: proximal/distal pattern specification


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proximal/distal pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:2180721 (MGI:2681052|PMID:14623241), (MGI:3046038|PMID:15069081) RGD PMID:14623241 PMID:15069081 MGI:2681052 MGI:3046038 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1856318 (MGI:3655896|PMID:16887818) RGD PMID:16887818 MGI:3655896 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:127,010,587...127,071,570
Ensembl chr 1:127,010,588...127,071,570
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148594 (MGI:2677587|PMID:12885771)
Ensembl
RGD
PMID:12885771 GO_REF:0000107 MGI:2677587 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO MGI:3039046 (MGI:3037623|PMID:15030763) RGD PMID:15030763 MGI:3037623 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5426345|PMID:22529374)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22529374 GO_REF:0000024 GO_REF:0000107 MGI:5426345 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857826|MGI:94902 (MGI:87771|PMID:9187081)
Ensembl
RGD
PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857828|MGI:94901 (MGI:87771|PMID:9187081)
Ensembl
RGD
PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (MGI:1194987|PMID:9362463), (MGI:81767|PMID:8684466) RGD PMID:8684466 PMID:9362463 MGI:1194987 MGI:81767 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO MGI:95728 (MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:3617688 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727|MGI:95729 (MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:3617688 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276|MGI:95728 (MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:3617688 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:3054923 (MGI:2665160|PMID:12808456) RGD PMID:12808456 MGI:2665160 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO MGI:96192|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,285,940...82,295,892
Ensembl chr 4:82,285,528...82,295,470
Ensembl chr 4:82,285,528...82,295,470
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96193|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:96210 (MGI:78984|PMID:8625797)
RGD PMID:8625797, PMID:21873635 MGI:78984, RGD:13792537 NCBI chr 4:82,191,804...82,199,025
Ensembl chr 4:82,192,963...82,194,927
JBrowse link
G Hoxb9 homeo box B9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:84,119,772...84,124,963
Ensembl chr10:84,119,884...84,123,390
JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO MGI:96171|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO MGI:96172|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580
JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO MGI:96171|MGI:96192 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:2150414|MGI:96180 (MGI:78984|PMID:8625797)
PMID:21873635
Ensembl
RGD
PMID:8625797, PMID:21873635 GO_REF:0000107 MGI:78984, RGD:13792537 NCBI chr 3:61,620,192...61,622,360
Ensembl chr 3:61,620,192...61,622,359
JBrowse link
G LOC103692128 homeobox protein Hox-A9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,277,599...82,284,820
Ensembl chr 4:82,192,963...82,194,927
Ensembl chr 4:82,192,963...82,194,927
JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO MGI:3707955 (MGI:3703100|PMID:17119023) RGD PMID:17119023 MGI:3703100 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:1341793|MGI:2155612 (MGI:2151355|PMID:11566859), (MGI:3629247|PMID:16672333) RGD PMID:11566859 PMID:16672333 MGI:2151355 MGI:3629247 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002
JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO MGI:97495 (MGI:3629247|PMID:16672333) RGD PMID:16672333 MGI:3629247 NCBI chr20:4,357,805...4,362,730
Ensembl chr20:4,357,733...4,362,682
JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO MGI:2684137 (MGI:2679409|PMID:14597661) RGD PMID:14597661 MGI:2679409 NCBI chr 6:146,784,915...146,789,439
Ensembl chr 6:146,784,915...146,787,518
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:1335634|PMID:10227293) RGD PMID:10227293 MGI:1335634 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3577664|PMID:15531758) RGD PMID:15531758 MGI:3577664 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829
JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:5582181|PMID:12163408) RGD PMID:12163408 MGI:5582181 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,910,912...33,916,741
Ensembl chr 1:33,910,912...33,916,741
JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,270,388...33,275,868
Ensembl chr 1:33,271,977...33,275,540
JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,910,912...33,916,741
Ensembl chr 1:33,910,912...33,916,741
JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,270,388...33,275,868
Ensembl chr 1:33,271,977...33,275,540
JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    multicellular organismal process 8912
      pattern specification process 492
        regionalization 386
          proximal/distal pattern formation 37
            leaf proximal/distal pattern formation 0
            maintenance of imaginal disc-derived wing hair orientation 0
            proximal/distal axis specification + 4
            proximal/distal pattern formation involved in nephron development + 5
            proximal/distal pattern formation, imaginal disc + 0
Path 2
Term Annotations click to browse term
  biological_process 19633
    developmental process 6782
      anatomical structure development 6259
        multicellular organism development 5740
          pattern specification process 492
            regionalization 386
              proximal/distal pattern formation 37
                leaf proximal/distal pattern formation 0
                maintenance of imaginal disc-derived wing hair orientation 0
                proximal/distal axis specification + 4
                proximal/distal pattern formation involved in nephron development + 5
                proximal/distal pattern formation, imaginal disc + 0
paths to the root