Rab23 (RAB23, member RAS oncogene family) - Rat Genome Database

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Gene: Rab23 (RAB23, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab23
Name: RAB23, member RAS oncogene family
RGD ID: 1306867
Description: Predicted to enable GTPase activity. Predicted to be involved in several processes, including cellular defense response; negative regulation of protein import into nucleus; and organelle assembly. Predicted to act upstream of or within several processes, including embryonic morphogenesis; regulation of smoothened signaling pathway; and spinal cord dorsal/ventral patterning. Predicted to be located in several cellular components, including cytosol; microtubule organizing center; and phagocytic vesicle. Predicted to be active in autophagosome and endosome membrane. Human ortholog(s) of this gene implicated in Carpenter syndrome 1. Orthologous to human RAB23 (RAB23, member RAS oncogene family); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC367242; ras-related protein Rab-23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,440,047 - 43,463,327 (+)NCBIGRCr8
mRatBN7.2935,943,522 - 35,967,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl935,944,085 - 35,966,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx944,441,007 - 44,464,287 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,572,193 - 49,595,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0947,854,110 - 47,877,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0938,469,784 - 38,496,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl938,470,298 - 38,495,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0938,150,197 - 38,176,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,465,752 - 32,486,615 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1932,470,305 - 32,486,681 (+)NCBI
Celera933,737,526 - 33,758,237 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
autophagosome  (IBA,IEA,ISO)
cell junction  (IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IEA,ISO)
cilium  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
endomembrane system  (IBA)
endosome membrane  (IBA,ISO)
phagocytic vesicle  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function
GTP binding  (IEA)
GTPase activity  (IBA,IEA,ISO)
protein binding  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7720556   PMID:9636176   PMID:11449277   PMID:14603322   PMID:15755804   PMID:16364285   PMID:16463280   PMID:17503333   PMID:17646400   PMID:19004860   PMID:21255211   PMID:22365972  
PMID:22452336   PMID:23376485   PMID:30361391  


Genomics

Comparative Map Data
Rab23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,440,047 - 43,463,327 (+)NCBIGRCr8
mRatBN7.2935,943,522 - 35,967,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl935,944,085 - 35,966,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx944,441,007 - 44,464,287 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,572,193 - 49,595,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0947,854,110 - 47,877,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0938,469,784 - 38,496,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl938,470,298 - 38,495,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0938,150,197 - 38,176,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,465,752 - 32,486,615 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1932,470,305 - 32,486,681 (+)NCBI
Celera933,737,526 - 33,758,237 (+)NCBICelera
Cytogenetic Map9q21NCBI
RAB23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38657,186,992 - 57,222,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl657,186,992 - 57,222,307 (-)EnsemblGRCh38hg38GRCh38
GRCh37657,051,790 - 57,087,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36657,161,540 - 57,195,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 34657,161,542 - 57,194,216NCBI
Celera658,716,680 - 58,750,177 (-)NCBICelera
Cytogenetic Map6p12.1-p11.2NCBI
HuRef656,885,847 - 56,921,168 (-)NCBIHuRef
CHM1_1657,052,116 - 57,087,451 (-)NCBICHM1_1
T2T-CHM13v2.0657,026,017 - 57,061,677 (-)NCBIT2T-CHM13v2.0
Rab23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,758,991 - 33,781,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,758,968 - 33,781,645 (+)EnsemblGRCm39 Ensembl
GRCm38133,719,896 - 33,742,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,719,887 - 33,742,564 (+)EnsemblGRCm38mm10GRCm38
MGSCv37133,776,741 - 33,799,409 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,664,442 - 33,686,043 (+)NCBIMGSCv36mm8
Celera133,494,937 - 33,517,604 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map112.8NCBI
Rab23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555022,950,562 - 2,980,634 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555022,947,170 - 2,980,634 (+)NCBIChiLan1.0ChiLan1.0
RAB23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2571,658,156 - 71,698,899 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1667,538,584 - 67,574,922 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0656,744,948 - 56,780,187 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1658,375,559 - 58,411,104 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl658,375,559 - 58,411,107 (-)Ensemblpanpan1.1panPan2
RAB23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11224,388,530 - 24,438,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1224,387,643 - 24,421,869 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1224,318,464 - 24,367,881 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01224,928,158 - 24,977,111 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1224,928,188 - 24,962,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11224,425,198 - 24,474,987 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01224,526,566 - 24,576,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01224,658,037 - 24,707,772 (+)NCBIUU_Cfam_GSD_1.0
Rab23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494659,832,445 - 59,864,419 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364764,095,329 - 4,127,701 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364764,095,829 - 4,127,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl728,632,082 - 28,658,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1728,632,065 - 28,658,958 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2733,092,585 - 33,119,432 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11714,383,064 - 14,418,144 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1714,383,155 - 14,414,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605820,502,672 - 20,512,527 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475318,988,842 - 19,014,799 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab23
134 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:882
Count of miRNA genes:313
Interacting mature miRNAs:418
Transcripts:ENSRNOT00000016933
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000016933   ⟹   ENSRNOP00000016933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl938,471,716 - 38,495,126 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090385   ⟹   ENSRNOP00000072716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl935,944,085 - 35,966,927 (+)Ensembl
Rnor_6.0 Ensembl938,470,298 - 38,495,176 (-)Ensembl
RefSeq Acc Id: NM_001109005   ⟹   NP_001102475
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,047 - 43,463,327 (+)NCBI
mRatBN7.2935,944,085 - 35,967,367 (+)NCBI
Rnor_6.0938,471,716 - 38,495,126 (-)NCBI
Rnor_5.0938,150,197 - 38,176,678 (-)NCBI
RGSC_v3.4932,465,752 - 32,486,615 (+)RGD
Celera933,737,526 - 33,758,237 (+)RGD
Sequence:
RefSeq Acc Id: XM_008766961   ⟹   XP_008765183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,142 - 43,463,327 (+)NCBI
mRatBN7.2935,943,522 - 35,967,367 (+)NCBI
Rnor_6.0938,469,784 - 38,496,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596564   ⟹   XP_017452053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,142 - 43,463,327 (+)NCBI
mRatBN7.2935,943,522 - 35,967,367 (+)NCBI
Rnor_6.0938,469,784 - 38,496,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596566   ⟹   XP_017452055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,594 - 43,463,327 (+)NCBI
mRatBN7.2935,944,366 - 35,967,367 (+)NCBI
Rnor_6.0938,469,784 - 38,495,121 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596567   ⟹   XP_017452056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,441,360 - 43,463,327 (+)NCBI
mRatBN7.2935,944,877 - 35,967,367 (+)NCBI
Rnor_6.0938,469,784 - 38,494,642 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596569   ⟹   XP_017452058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,142 - 43,463,327 (+)NCBI
mRatBN7.2935,943,522 - 35,967,367 (+)NCBI
Rnor_6.0938,469,784 - 38,496,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083967   ⟹   XP_038939895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,594 - 43,463,327 (+)NCBI
mRatBN7.2935,944,366 - 35,967,367 (+)NCBI
RefSeq Acc Id: XM_039083968   ⟹   XP_038939896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,594 - 43,463,327 (+)NCBI
mRatBN7.2935,944,365 - 35,967,367 (+)NCBI
RefSeq Acc Id: XM_039083969   ⟹   XP_038939897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,440,594 - 43,463,327 (+)NCBI
mRatBN7.2935,944,365 - 35,967,367 (+)NCBI
RefSeq Acc Id: XM_063267504   ⟹   XP_063123574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,441,362 - 43,463,327 (+)NCBI
RefSeq Acc Id: XM_063267505   ⟹   XP_063123575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,441,362 - 43,463,327 (+)NCBI
RefSeq Acc Id: NP_001102475   ⟸   NM_001109005
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765183   ⟸   XM_008766961
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452058   ⟸   XM_017596569
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452053   ⟸   XM_017596564
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452055   ⟸   XM_017596566
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452056   ⟸   XM_017596567
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072716   ⟸   ENSRNOT00000090385
Ensembl Acc Id: ENSRNOP00000016933   ⟸   ENSRNOT00000016933
RefSeq Acc Id: XP_038939896   ⟸   XM_039083968
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939897   ⟸   XM_039083969
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939895   ⟸   XM_039083967
- Peptide Label: isoform X1
- UniProtKB: D3ZRM5 (UniProtKB/TrEMBL),   A6IN92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123574   ⟸   XM_063267504
- Peptide Label: isoform X1
- UniProtKB: A6IN92 (UniProtKB/TrEMBL),   D3ZRM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123575   ⟸   XM_063267505
- Peptide Label: isoform X1
- UniProtKB: A6IN92 (UniProtKB/TrEMBL),   D3ZRM5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRM5-F1-model_v2 AlphaFold D3ZRM5 1-237 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306867 AgrOrtholog
BioCyc Gene G2FUF-27878 BioCyc
Ensembl Genes ENSRNOG00000012629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090385 ENTREZGENE
  ENSRNOT00000090385.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Rab23 UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP-bd UniProtKB/TrEMBL
KEGG Report rno:367242 UniProtKB/TrEMBL
NCBI Gene 367242 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab23 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012629 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A6IN92 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRM5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab23  RAB23, member RAS oncogene family   Rab23_predicted  RAB23, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab23_predicted  RAB23, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED