RAB23 (RAB23, member RAS oncogene family) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RAB23 (RAB23, member RAS oncogene family) Pan paniscus
Analyze
Symbol: RAB23
Name: RAB23, member RAS oncogene family
RGD ID: 11771406
Description: ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular defense response (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH Carpenter syndrome (ortholog); Carpenter Syndrome 1 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN autophagosome (ortholog); cell junction (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ras-related protein Rab-23
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1658,375,559 - 58,411,104 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl658,375,559 - 58,411,107 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0656,744,948 - 56,780,187 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RAB23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1658,375,559 - 58,411,104 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl658,375,559 - 58,411,107 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0656,744,948 - 56,780,187 (-)NCBIMhudiblu_PPA_v0panPan3
RAB23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl657,186,992 - 57,222,307 (-)EnsemblGRCh38hg38GRCh38
GRCh38657,186,992 - 57,222,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37657,051,790 - 57,087,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36657,161,540 - 57,195,037 (-)NCBINCBI36hg18NCBI36
Build 34657,161,542 - 57,194,216NCBI
Celera658,716,680 - 58,750,177 (-)NCBI
Cytogenetic Map6p12.1-p11.2NCBI
HuRef656,885,847 - 56,921,168 (-)NCBIHuRef
CHM1_1657,052,116 - 57,087,451 (-)NCBICHM1_1
Rab23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,758,959 - 33,781,645 (+)NCBIGRCm39mm39
GRCm39 Ensembl133,758,968 - 33,781,645 (+)Ensembl
GRCm38133,719,896 - 33,742,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,719,887 - 33,742,564 (+)EnsemblGRCm38mm10GRCm38
MGSCv37133,776,741 - 33,799,409 (+)NCBIGRCm37mm9NCBIm37
MGSCv36133,664,442 - 33,686,043 (+)NCBImm8
Celera133,494,937 - 33,517,604 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map112.8NCBI
Rab23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2935,943,522 - 35,967,367 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl935,944,085 - 35,966,927 (+)Ensembl
Rnor_6.0938,469,784 - 38,496,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl938,470,298 - 38,495,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0938,150,197 - 38,176,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,465,752 - 32,486,615 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1932,470,305 - 32,486,681 (+)NCBI
Celera933,737,526 - 33,758,237 (+)NCBICelera
Cytogenetic Map9q21NCBI
Rab23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555022,950,562 - 2,980,634 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555022,947,170 - 2,980,634 (+)NCBIChiLan1.0ChiLan1.0
RAB23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11224,388,530 - 24,438,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1224,387,643 - 24,421,869 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1224,318,464 - 24,367,881 (+)NCBI
ROS_Cfam_1.01224,928,158 - 24,977,111 (+)NCBI
UMICH_Zoey_3.11224,425,198 - 24,474,987 (+)NCBI
UNSW_CanFamBas_1.01224,526,566 - 24,576,395 (+)NCBI
UU_Cfam_GSD_1.01224,658,037 - 24,707,772 (+)NCBI
Rab23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494659,832,445 - 59,864,419 (-)NCBI
SpeTri2.0NW_0049364764,095,829 - 4,127,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl728,632,082 - 28,658,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1728,632,065 - 28,658,958 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2733,092,585 - 33,119,432 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11714,383,064 - 14,418,144 (+)NCBI
ChlSab1.1 Ensembl1714,383,155 - 14,414,698 (+)Ensembl
Vero_WHO_p1.0NW_02366605820,502,672 - 20,512,527 (+)NCBI
Rab23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475318,988,842 - 19,014,799 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000010859   ⟹   ENSPPAP00000002204
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl658,375,559 - 58,411,107 (-)Ensembl
RefSeq Acc Id: XM_003828917   ⟹   XP_003828965
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1658,375,559 - 58,409,833 (-)NCBI
Mhudiblu_PPA_v0656,744,948 - 56,779,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034962279   ⟹   XP_034818170
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0656,744,948 - 56,780,186 (-)NCBI
RefSeq Acc Id: XM_034962280   ⟹   XP_034818171
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0656,744,948 - 56,780,187 (-)NCBI
RefSeq Acc Id: XM_034962281   ⟹   XP_034818172
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0656,744,948 - 56,780,162 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003828965 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818170 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818171 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818172 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003828965   ⟸   XM_003828917
- Sequence:
RefSeq Acc Id: XP_034818171   ⟸   XM_034962280
RefSeq Acc Id: XP_034818170   ⟸   XM_034962279
RefSeq Acc Id: XP_034818172   ⟸   XM_034962281
RefSeq Acc Id: ENSPPAP00000002204   ⟸   ENSPPAT00000010859


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000010023 Ensembl, ENTREZGENE
NCBI Gene RAB23 ENTREZGENE